Wall clock time and date at job start Tue Mar 31 2020 12:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47249 * 2 1 4 4 H 1.09003 * 109.46997 * 304.99496 * 3 2 1 5 5 N 1.46494 * 109.47531 * 65.00015 * 3 2 1 6 6 C 1.34780 * 120.00143 * 275.00348 * 5 3 2 7 7 O 1.21599 * 119.99398 * 359.97438 * 6 5 3 8 8 N 1.34773 * 120.00030 * 179.97438 * 6 5 3 9 9 C 1.40195 * 119.99594 * 179.97438 * 8 6 5 10 10 C 1.40398 * 125.97590 * 359.71442 * 9 8 6 11 11 C 1.35249 * 107.86850 * 179.83111 * 10 9 8 12 12 N 1.34962 * 107.85816 * 0.42564 * 11 10 9 13 13 C 1.46495 * 125.97775 * 179.70598 * 12 11 10 14 14 C 1.50704 * 109.47075 * 125.00429 * 13 12 11 15 15 H 1.07996 * 119.99556 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99742 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00288 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99796 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47356 * 90.00005 * 18 16 14 20 20 H 1.48497 * 109.47166 * 210.00071 * 18 16 14 21 21 H 1.48502 * 109.47432 * 330.00134 * 18 16 14 22 22 N 1.31216 * 125.96925 * 180.02562 * 9 8 6 23 23 C 1.53005 * 109.47034 * 185.00165 * 3 2 1 24 24 H 1.09002 * 110.33140 * 300.69849 * 23 3 2 25 25 C 1.54481 * 110.37412 * 178.45004 * 23 3 2 26 26 C 1.54503 * 104.06445 * 217.08080 * 25 23 3 27 27 C 1.54482 * 104.06349 * 359.97438 * 26 25 23 28 28 O 1.44428 * 110.46595 * 63.01205 * 23 3 2 29 29 H 1.09005 * 109.46873 * 60.00066 * 1 2 3 30 30 H 1.09002 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47151 * 300.00372 * 1 2 3 32 32 H 1.09003 * 109.46512 * 239.99771 * 2 1 3 33 33 H 1.08994 * 109.47273 * 120.00203 * 2 1 3 34 34 H 0.96995 * 120.00179 * 94.99506 * 5 3 2 35 35 H 0.96995 * 120.00292 * 359.97438 * 8 6 5 36 36 H 1.08004 * 126.06524 * 359.97438 * 10 9 8 37 37 H 1.07999 * 126.07050 * 180.16274 * 11 10 9 38 38 H 1.08997 * 109.47201 * 245.00605 * 13 12 11 39 39 H 1.08999 * 109.46948 * 5.00301 * 13 12 11 40 40 H 0.96999 * 119.99906 * 179.97438 * 17 16 14 41 41 H 1.09007 * 110.50806 * 335.72406 * 25 23 3 42 42 H 1.08998 * 110.51350 * 98.28882 * 25 23 3 43 43 H 1.08994 * 110.51469 * 118.64075 * 26 25 23 44 44 H 1.09004 * 110.51074 * 241.35380 * 26 25 23 45 45 H 1.09000 * 110.37168 * 142.80761 * 27 26 25 46 46 H 1.08995 * 110.37315 * 265.15262 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0975 1.2517 6 6 0.4352 2.6644 1.3669 7 8 -0.3412 2.6325 0.4316 8 7 0.0786 3.2666 2.5187 9 6 -1.1875 3.8568 2.6382 10 6 -2.1753 3.8988 1.6414 11 6 -3.2477 4.5495 2.1471 12 7 -2.9511 4.9158 3.4118 13 6 -3.8312 5.6503 4.3239 14 6 -3.9888 4.8724 5.6050 15 1 -3.4835 3.9259 5.7275 16 6 -4.7780 5.3692 6.6205 17 7 -5.3930 6.5221 6.4714 18 14 -4.9739 4.4047 8.2082 19 1 -3.9159 4.8107 9.1679 20 1 -6.3088 4.6841 8.7957 21 1 -4.8527 2.9523 7.9233 22 7 -1.6542 4.4714 3.6994 23 6 3.5649 1.4442 -0.1258 24 1 4.0139 0.8975 0.7035 25 6 4.0995 2.8930 -0.1669 26 6 5.2726 2.8320 -1.1705 27 6 5.3085 1.3534 -1.6165 28 8 3.9683 0.8661 -1.3863 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2720 2.1231 1.9977 35 1 0.6977 3.2917 3.2649 36 1 -2.0942 3.4830 0.6480 37 1 -4.1750 4.7454 1.6293 38 1 -3.3960 6.6255 4.5422 39 1 -4.8074 5.7842 3.8577 40 1 -5.9485 6.8714 7.1857 41 1 3.3273 3.5750 -0.5230 42 1 4.4522 3.1981 0.8182 43 1 5.0805 3.4837 -2.0228 44 1 6.2077 3.1060 -0.6821 45 1 5.5611 1.2822 -2.6745 46 1 6.0250 0.7932 -1.0159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163792887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:28 Heat of formation + Delta-G solvation = 4.922757 kcal Electronic energy + Delta-G solvation = -27127.323843 eV Core-core repulsion = 23247.028378 eV Total energy + Delta-G solvation = -3880.295465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.87407 -40.17333 -39.31230 -36.13205 -34.58402 -33.40997 -32.63454 -32.09059 -30.75132 -29.93833 -29.24080 -26.68471 -25.82065 -23.22793 -22.83593 -22.02770 -21.32837 -20.91651 -20.39322 -19.76345 -18.06604 -17.18430 -16.59781 -16.55835 -16.24427 -15.89520 -15.67288 -15.25613 -14.74148 -14.35932 -14.28331 -14.09729 -13.95333 -13.52722 -13.40273 -12.79472 -12.73620 -12.35529 -12.27306 -12.17999 -12.09011 -11.75576 -11.71536 -11.46188 -11.12460 -11.05428 -10.89636 -10.87643 -10.83050 -10.36053 -10.24530 -10.18571 -10.02020 -9.65497 -9.46391 -9.16169 -8.62183 -8.07584 -7.38978 -6.23092 -4.28009 2.29458 2.69039 3.13168 3.24285 3.30031 3.34579 3.39511 3.76887 3.87483 4.07429 4.24630 4.29092 4.38476 4.51726 4.59374 4.77581 4.88512 5.04623 5.11266 5.11971 5.23441 5.28853 5.38876 5.47505 5.52432 5.57443 5.67746 5.70148 5.83404 5.86737 5.99821 6.12792 6.24530 6.31301 6.43825 6.54166 6.56894 6.61740 6.89927 7.02792 7.12542 7.52427 7.71047 7.84250 7.99604 8.09018 8.61973 8.68710 8.82547 9.37498 10.85553 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.002275 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.883829 B =12306.629721 C =12377.900290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.173 3.827 4 H 0.099 0.901 5 N -0.737 5.737 6 C 0.716 3.284 7 O -0.558 6.558 8 N -0.644 5.644 9 C 0.276 3.724 10 C -0.285 4.285 11 C 0.050 3.950 12 N -0.321 5.321 13 C 0.259 3.741 14 C -0.527 4.527 15 H 0.069 0.931 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.908 3.092 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.273 1.273 22 N -0.309 5.309 23 C 0.069 3.931 24 H 0.073 0.927 25 C -0.151 4.151 26 C -0.156 4.156 27 C 0.045 3.955 28 O -0.363 6.363 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.395 0.605 35 H 0.406 0.594 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.267 0.733 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.774 -9.537 -14.343 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.068 3.932 4 H 0.117 0.883 5 N -0.395 5.395 6 C 0.415 3.585 7 O -0.433 6.433 8 N -0.294 5.294 9 C 0.022 3.978 10 C -0.317 4.317 11 C -0.100 4.100 12 N -0.103 5.103 13 C 0.141 3.859 14 C -0.565 4.565 15 H 0.087 0.913 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.735 3.265 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 N -0.140 5.140 23 C 0.011 3.989 24 H 0.091 0.909 25 C -0.188 4.188 26 C -0.194 4.194 27 C -0.032 4.032 28 O -0.281 6.281 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.228 0.772 35 H 0.240 0.760 36 H 0.179 0.821 37 H 0.184 0.816 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.964 -9.149 -14.006 26.047 hybrid contribution 0.455 -0.453 1.087 1.262 sum 20.419 -9.601 -12.920 26.001 Atomic orbital electron populations 1.21794 0.94389 1.00469 1.03503 1.21936 0.97393 0.95380 1.02266 1.20716 0.91522 0.94085 0.86884 0.88285 1.44891 1.15915 1.61679 1.16975 1.15491 0.82112 0.78231 0.82627 1.90890 1.50732 1.63331 1.38373 1.41382 1.14699 1.57904 1.15414 1.18770 0.86092 0.98785 0.94128 1.21513 0.93356 1.14119 1.02674 1.22558 1.00240 1.00020 0.87167 1.49043 1.09762 1.41128 1.10345 1.19724 0.86777 0.91495 0.87883 1.21259 1.29657 1.06818 0.98811 0.91326 1.24948 0.95063 0.95157 0.98974 1.69919 1.31019 1.18535 1.33918 0.86329 0.77439 0.80205 0.82525 1.20369 1.20999 1.19736 1.77322 0.95794 1.20690 1.20171 1.23154 0.94682 0.93166 0.87924 0.90882 1.22990 0.98370 0.97225 1.00247 1.22948 0.99059 0.97572 0.99813 1.23434 0.84792 0.93099 1.01870 1.89141 1.30233 1.70678 1.38026 0.92036 0.93835 0.92108 0.90548 0.92212 0.77172 0.75995 0.82121 0.81599 0.93797 0.92563 0.92353 0.90074 0.90348 0.90507 0.90508 0.88902 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.51 37.16 0.32 -1.44 16 2 C -0.13 -1.29 5.56 -26.73 -0.15 -1.44 16 3 C 0.17 1.64 1.93 -67.93 -0.13 1.51 16 4 H 0.10 1.16 7.58 -51.93 -0.39 0.77 16 5 N -0.74 -7.00 4.71 -58.68 -0.28 -7.27 16 6 C 0.72 9.94 7.10 -86.92 -0.62 9.33 16 7 O -0.56 -9.42 10.61 5.28 0.06 -9.36 16 8 N -0.64 -9.69 5.46 -15.50 -0.08 -9.77 16 9 C 0.28 5.49 8.11 -154.36 -1.25 4.24 16 10 C -0.29 -5.65 9.61 -39.83 -0.38 -6.03 16 11 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 12 N -0.32 -7.48 3.67 -62.56 -0.23 -7.71 16 13 C 0.26 6.60 6.26 -5.19 -0.03 6.56 16 14 C -0.53 -14.69 9.24 -34.44 -0.32 -15.01 16 15 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.90 -25.38 13.29 55.43 0.74 -24.64 16 18 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 22 N -0.31 -7.07 12.42 31.44 0.39 -6.68 16 23 C 0.07 0.52 2.86 -25.95 -0.07 0.44 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 C -0.15 -1.00 6.32 -25.17 -0.16 -1.16 16 26 C -0.16 -0.87 7.09 -25.16 -0.18 -1.05 16 27 C 0.04 0.27 7.63 37.94 0.29 0.56 16 28 O -0.36 -3.21 10.78 -35.23 -0.38 -3.59 16 29 H 0.06 0.82 7.84 -51.93 -0.41 0.41 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.88 5.64 -51.93 -0.29 0.58 16 32 H 0.08 0.74 7.68 -51.93 -0.40 0.34 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.39 2.61 8.62 -40.82 -0.35 2.25 16 35 H 0.41 4.91 8.84 -40.82 -0.36 4.55 16 36 H 0.16 3.11 5.91 -52.48 -0.31 2.80 16 37 H 0.17 2.74 8.06 -52.49 -0.42 2.31 16 38 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -32.64 374.39 -9.26 -41.91 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.12 Total: 6.19 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -2.98 Total: -1.09 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.54 Total: -56.08 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.32 Total: -12.95 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.64 -9.26 -41.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163792887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.830 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds