Wall clock time and date at job start Tue Mar 31 2020 12:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47249 * 2 1 4 4 H 1.09003 * 109.46997 * 304.99496 * 3 2 1 5 5 N 1.46494 * 109.47531 * 65.00015 * 3 2 1 6 6 C 1.34780 * 120.00143 * 275.00348 * 5 3 2 7 7 O 1.21599 * 119.99398 * 359.97438 * 6 5 3 8 8 N 1.34773 * 120.00030 * 179.97438 * 6 5 3 9 9 C 1.40195 * 119.99594 * 179.97438 * 8 6 5 10 10 C 1.40398 * 125.97590 * 359.71442 * 9 8 6 11 11 C 1.35249 * 107.86850 * 179.83111 * 10 9 8 12 12 N 1.34962 * 107.85816 * 0.42564 * 11 10 9 13 13 C 1.46495 * 125.97775 * 179.70598 * 12 11 10 14 14 C 1.50704 * 109.47075 * 125.00429 * 13 12 11 15 15 H 1.07996 * 119.99556 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99742 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00288 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99796 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47356 * 90.00005 * 18 16 14 20 20 H 1.48497 * 109.47166 * 210.00071 * 18 16 14 21 21 H 1.48502 * 109.47432 * 330.00134 * 18 16 14 22 22 N 1.31216 * 125.96925 * 180.02562 * 9 8 6 23 23 C 1.53005 * 109.47034 * 185.00165 * 3 2 1 24 24 H 1.09002 * 110.33140 * 300.69849 * 23 3 2 25 25 C 1.54481 * 110.37412 * 178.45004 * 23 3 2 26 26 C 1.54503 * 104.06445 * 217.08080 * 25 23 3 27 27 C 1.54482 * 104.06349 * 359.97438 * 26 25 23 28 28 O 1.44428 * 110.46595 * 63.01205 * 23 3 2 29 29 H 1.09005 * 109.46873 * 60.00066 * 1 2 3 30 30 H 1.09002 * 109.47401 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47151 * 300.00372 * 1 2 3 32 32 H 1.09003 * 109.46512 * 239.99771 * 2 1 3 33 33 H 1.08994 * 109.47273 * 120.00203 * 2 1 3 34 34 H 0.96995 * 120.00179 * 94.99506 * 5 3 2 35 35 H 0.96995 * 120.00292 * 359.97438 * 8 6 5 36 36 H 1.08004 * 126.06524 * 359.97438 * 10 9 8 37 37 H 1.07999 * 126.07050 * 180.16274 * 11 10 9 38 38 H 1.08997 * 109.47201 * 245.00605 * 13 12 11 39 39 H 1.08999 * 109.46948 * 5.00301 * 13 12 11 40 40 H 0.96999 * 119.99906 * 179.97438 * 17 16 14 41 41 H 1.09007 * 110.50806 * 335.72406 * 25 23 3 42 42 H 1.08998 * 110.51350 * 98.28882 * 25 23 3 43 43 H 1.08994 * 110.51469 * 118.64075 * 26 25 23 44 44 H 1.09004 * 110.51074 * 241.35380 * 26 25 23 45 45 H 1.09000 * 110.37168 * 142.80761 * 27 26 25 46 46 H 1.08995 * 110.37315 * 265.15262 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0975 1.2517 6 6 0.4352 2.6644 1.3669 7 8 -0.3412 2.6325 0.4316 8 7 0.0786 3.2666 2.5187 9 6 -1.1875 3.8568 2.6382 10 6 -2.1753 3.8988 1.6414 11 6 -3.2477 4.5495 2.1471 12 7 -2.9511 4.9158 3.4118 13 6 -3.8312 5.6503 4.3239 14 6 -3.9888 4.8724 5.6050 15 1 -3.4835 3.9259 5.7275 16 6 -4.7780 5.3692 6.6205 17 7 -5.3930 6.5221 6.4714 18 14 -4.9739 4.4047 8.2082 19 1 -3.9159 4.8107 9.1679 20 1 -6.3088 4.6841 8.7957 21 1 -4.8527 2.9523 7.9233 22 7 -1.6542 4.4714 3.6994 23 6 3.5649 1.4442 -0.1258 24 1 4.0139 0.8975 0.7035 25 6 4.0995 2.8930 -0.1669 26 6 5.2726 2.8320 -1.1705 27 6 5.3085 1.3534 -1.6165 28 8 3.9683 0.8661 -1.3863 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2720 2.1231 1.9977 35 1 0.6977 3.2917 3.2649 36 1 -2.0942 3.4830 0.6480 37 1 -4.1750 4.7454 1.6293 38 1 -3.3960 6.6255 4.5422 39 1 -4.8074 5.7842 3.8577 40 1 -5.9485 6.8714 7.1857 41 1 3.3273 3.5750 -0.5230 42 1 4.4522 3.1981 0.8182 43 1 5.0805 3.4837 -2.0228 44 1 6.2077 3.1060 -0.6821 45 1 5.5611 1.2822 -2.6745 46 1 6.0250 0.7932 -1.0159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163792887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:27 Heat of formation + Delta-G solvation = -16.828199 kcal Electronic energy + Delta-G solvation = -27128.267035 eV Core-core repulsion = 23247.028378 eV Total energy + Delta-G solvation = -3881.238657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.23810 -41.27493 -40.19701 -37.11915 -35.99274 -35.27997 -33.54478 -32.98086 -32.27152 -30.91415 -30.63607 -28.50971 -26.65770 -25.02163 -23.56185 -23.20677 -22.06256 -21.91192 -21.67213 -21.17999 -19.23331 -18.68343 -18.26045 -17.69396 -17.06325 -16.92059 -16.62155 -16.55048 -16.08611 -15.75333 -15.56603 -15.30101 -14.70952 -14.56032 -14.46067 -14.21331 -14.15746 -13.77549 -13.62952 -13.54929 -12.99086 -12.92429 -12.72586 -12.62558 -12.40021 -12.28044 -12.17271 -12.06450 -11.74942 -11.70336 -11.57265 -11.46659 -11.34298 -11.02157 -10.72932 -10.71216 -10.12075 -9.69545 -9.02460 -8.31730 -6.45940 1.08144 1.13907 1.38745 1.39331 1.50941 1.74911 2.07842 2.36271 2.45589 2.88800 2.99632 3.30878 3.46699 3.72925 3.98332 4.01113 4.09726 4.17408 4.22800 4.30782 4.36188 4.47855 4.56601 4.68939 4.78146 4.84358 4.88956 4.93854 4.97669 4.97875 5.00748 5.03457 5.07753 5.13285 5.18183 5.18502 5.23762 5.51040 5.53459 5.58214 5.78596 5.89978 5.91260 6.01467 6.31478 6.65233 6.79530 7.18613 7.23912 7.49300 8.75587 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024688 B = 0.002275 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.883829 B =12306.629721 C =12377.900290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.176 3.824 4 H 0.073 0.927 5 N -0.713 5.713 6 C 0.716 3.284 7 O -0.588 6.588 8 N -0.636 5.636 9 C 0.287 3.713 10 C -0.290 4.290 11 C 0.054 3.946 12 N -0.346 5.346 13 C 0.273 3.727 14 C -0.546 4.546 15 H 0.052 0.948 16 C 0.017 3.983 17 N -0.921 5.921 18 Si 0.972 3.028 19 H -0.272 1.272 20 H -0.273 1.273 21 H -0.273 1.273 22 N -0.348 5.348 23 C 0.075 3.925 24 H 0.095 0.905 25 C -0.152 4.152 26 C -0.154 4.154 27 C 0.040 3.960 28 O -0.387 6.387 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.413 0.587 35 H 0.420 0.580 36 H 0.167 0.833 37 H 0.198 0.802 38 H 0.021 0.979 39 H 0.057 0.943 40 H 0.272 0.728 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.634 -10.843 -14.016 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.071 3.929 4 H 0.091 0.909 5 N -0.371 5.371 6 C 0.415 3.585 7 O -0.465 6.465 8 N -0.288 5.288 9 C 0.032 3.968 10 C -0.322 4.322 11 C -0.095 4.095 12 N -0.128 5.128 13 C 0.154 3.846 14 C -0.584 4.584 15 H 0.070 0.930 16 C -0.183 4.183 17 N -0.560 5.560 18 Si 0.796 3.204 19 H -0.197 1.197 20 H -0.197 1.197 21 H -0.198 1.198 22 N -0.179 5.179 23 C 0.017 3.983 24 H 0.113 0.887 25 C -0.189 4.189 26 C -0.191 4.191 27 C -0.036 4.036 28 O -0.306 6.306 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.250 0.750 35 H 0.257 0.743 36 H 0.185 0.815 37 H 0.215 0.785 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 21.892 -10.472 -13.686 27.861 hybrid contribution -0.039 -0.095 0.839 0.845 sum 21.853 -10.566 -12.847 27.464 Atomic orbital electron populations 1.21717 0.96248 1.00312 1.01419 1.21890 0.95512 0.95703 1.03235 1.20691 0.93238 0.93380 0.85626 0.90875 1.44649 1.14540 1.60132 1.17774 1.15615 0.82997 0.78095 0.81766 1.90869 1.52027 1.64344 1.39255 1.41367 1.13395 1.57584 1.16501 1.19052 0.87483 0.97140 0.93165 1.21680 0.93418 1.14169 1.02896 1.23143 1.01508 0.98774 0.86053 1.48798 1.10174 1.42711 1.11123 1.19315 0.86967 0.90510 0.87785 1.21396 1.30060 1.06576 1.00349 0.92961 1.25748 0.94493 0.96047 1.02024 1.69997 1.31298 1.19597 1.35073 0.85344 0.77922 0.78595 0.78525 1.19729 1.19744 1.19770 1.77241 0.96142 1.22692 1.21848 1.23131 0.92762 0.94028 0.88384 0.88677 1.23002 0.98263 0.96215 1.01459 1.22953 0.99375 0.97318 0.99497 1.23621 0.83832 0.93373 1.02788 1.89116 1.31781 1.71107 1.38574 0.93831 0.93018 0.94380 0.90075 0.90617 0.74972 0.74294 0.81548 0.78479 0.96107 0.92490 0.91866 0.92094 0.88602 0.91017 0.88722 0.88223 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.51 71.98 0.61 -2.75 16 2 C -0.12 -2.27 5.56 30.59 0.17 -2.10 16 3 C 0.18 3.11 1.93 44.99 0.09 3.20 16 4 H 0.07 1.73 7.58 -2.39 -0.02 1.71 16 5 N -0.71 -12.43 4.71 -457.81 -2.15 -14.58 16 6 C 0.72 19.38 7.10 179.05 1.27 20.65 16 7 O -0.59 -19.89 10.61 -4.03 -0.04 -19.93 16 8 N -0.64 -18.68 5.46 -321.22 -1.75 -20.44 16 9 C 0.29 11.42 8.11 133.31 1.08 12.50 16 10 C -0.29 -11.48 9.61 22.11 0.21 -11.27 16 11 C 0.05 2.15 11.44 83.52 0.96 3.11 16 12 N -0.35 -16.41 3.67 -351.85 -1.29 -17.70 16 13 C 0.27 14.29 6.26 85.64 0.54 14.83 16 14 C -0.55 -30.95 9.24 25.60 0.24 -30.71 16 15 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 16 C 0.02 0.95 5.46 84.65 0.46 1.41 16 17 N -0.92 -52.40 13.29 21.45 0.28 -52.11 16 18 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 N -0.35 -16.18 12.42 -54.43 -0.68 -16.86 16 23 C 0.08 0.96 2.86 31.10 0.09 1.04 16 24 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 25 C -0.15 -1.70 6.32 31.61 0.20 -1.50 16 26 C -0.15 -1.38 7.09 31.61 0.22 -1.16 16 27 C 0.04 0.39 7.63 72.49 0.55 0.94 16 28 O -0.39 -6.13 10.78 -148.98 -1.61 -7.74 16 29 H 0.04 1.18 7.84 -2.38 -0.02 1.16 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 1.08 5.64 -2.39 -0.01 1.07 16 32 H 0.08 1.45 7.68 -2.39 -0.02 1.43 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.41 4.36 8.62 -92.71 -0.80 3.56 16 35 H 0.42 9.66 8.84 -92.71 -0.82 8.84 16 36 H 0.17 6.43 5.91 -2.91 -0.02 6.42 16 37 H 0.20 6.33 8.06 -2.91 -0.02 6.31 16 38 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 2.92 8.07 -2.39 -0.02 2.90 16 40 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 41 H 0.06 0.94 7.87 -2.38 -0.02 0.92 16 42 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 45 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -71.45 374.39 0.87 -70.58 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.61 Total: 24.83 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 6.69 Total: 8.19 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -5.59 Total: -121.69 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -1.65 Total: -27.67 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.45 0.87 -70.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163792887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.756 kcal (2) G-P(sol) polarization free energy of solvation -71.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds