Wall clock time and date at job start Tue Mar 31 2020 12:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47533 * 2 1 4 4 H 1.09008 * 109.46823 * 54.99922 * 3 2 1 5 5 N 1.46496 * 109.47365 * 295.00343 * 3 2 1 6 6 C 1.34769 * 120.00315 * 84.99500 * 5 3 2 7 7 O 1.21595 * 120.00066 * 0.02562 * 6 5 3 8 8 N 1.34779 * 120.00183 * 180.02562 * 6 5 3 9 9 C 1.40197 * 120.00233 * 180.02562 * 8 6 5 10 10 C 1.40404 * 125.96941 * 359.97438 * 9 8 6 11 11 C 1.35241 * 107.86499 * 180.02562 * 10 9 8 12 12 N 1.34964 * 107.85989 * 0.02562 * 11 10 9 13 13 C 1.46506 * 125.97432 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46928 * 125.00157 * 13 12 11 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99749 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00236 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47160 * 89.99730 * 18 16 14 20 20 H 1.48503 * 109.47061 * 209.99752 * 18 16 14 21 21 H 1.48500 * 109.46598 * 329.99398 * 18 16 14 22 22 N 1.31212 * 125.97643 * 180.30439 * 9 8 6 23 23 C 1.52998 * 109.47426 * 174.99680 * 3 2 1 24 24 H 1.09001 * 110.27099 * 60.63827 * 23 3 2 25 25 C 1.54949 * 110.31425 * 182.83564 * 23 3 2 26 26 C 1.55300 * 100.94279 * 155.36159 * 25 23 3 27 27 C 1.54381 * 102.25558 * 325.86702 * 26 25 23 28 28 O 1.43240 * 107.58561 * 21.35893 * 27 26 25 29 29 H 1.09001 * 109.46693 * 300.00232 * 1 2 3 30 30 H 1.08998 * 109.46653 * 60.00034 * 1 2 3 31 31 H 1.08993 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47090 * 240.00132 * 2 1 3 33 33 H 1.09004 * 109.47064 * 120.00499 * 2 1 3 34 34 H 0.97007 * 119.99761 * 265.00118 * 5 3 2 35 35 H 0.96999 * 119.99949 * 0.02562 * 8 6 5 36 36 H 1.07998 * 126.06614 * 359.97438 * 10 9 8 37 37 H 1.08009 * 126.07229 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.47073 * 244.99985 * 13 12 11 39 39 H 1.09000 * 109.47212 * 5.00067 * 13 12 11 40 40 H 0.97001 * 119.99269 * 180.02562 * 17 16 14 41 41 H 1.09003 * 111.12217 * 273.28619 * 25 23 3 42 42 H 1.09003 * 111.12289 * 37.44177 * 25 23 3 43 43 H 1.09001 * 110.84747 * 207.67235 * 26 25 23 44 44 H 1.09004 * 111.01877 * 84.14065 * 26 25 23 45 45 H 1.08991 * 109.82846 * 261.84549 * 27 26 25 46 46 H 1.08996 * 109.82624 * 140.86854 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6526 2.0975 -1.2517 6 6 0.4353 2.6644 -1.3669 7 8 -0.3411 2.6326 -0.4316 8 7 0.0786 3.2666 -2.5187 9 6 -1.1874 3.8568 -2.6383 10 6 -2.1775 3.8935 -1.6435 11 6 -3.2478 4.5490 -2.1473 12 7 -2.9515 4.9146 -3.4123 13 6 -3.8324 5.6475 -4.3250 14 6 -3.1260 6.8828 -4.8211 15 1 -2.1212 7.1000 -4.4899 16 6 -3.7620 7.7352 -5.6985 17 7 -3.1456 8.8135 -6.1310 18 14 -5.4997 7.3592 -6.2719 19 1 -6.4739 7.9876 -5.3440 20 1 -5.6979 7.9021 -7.6398 21 1 -5.7084 5.8890 -6.2877 22 7 -1.6564 4.4662 -3.7015 23 6 3.5649 1.4442 0.1258 24 1 4.0139 0.9176 -0.7163 25 6 4.0969 2.8976 0.1994 26 6 5.4425 2.6817 0.9440 27 6 5.1056 1.5159 1.8983 28 8 3.9638 0.8356 1.3643 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.2721 2.1231 -1.9978 35 1 0.6978 3.2917 -3.2649 36 1 -2.0987 3.4722 -0.6522 37 1 -4.1751 4.7452 -1.6294 38 1 -4.0889 5.0109 -5.1719 39 1 -4.7422 5.9360 -3.7986 40 1 -3.5933 9.4133 -6.7480 41 1 4.2606 3.3070 -0.7974 42 1 3.4256 3.5328 0.7775 43 1 5.7231 3.5733 1.5046 44 1 6.2328 2.3981 0.2488 45 1 4.8741 1.9049 2.8898 46 1 5.9507 0.8300 1.9568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163793017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:31 Heat of formation + Delta-G solvation = 10.504553 kcal Electronic energy + Delta-G solvation = -27147.371958 eV Core-core repulsion = 23267.318538 eV Total energy + Delta-G solvation = -3880.053420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.91476 -40.22367 -39.35135 -36.15025 -34.62381 -33.36689 -32.66423 -32.13145 -31.02663 -30.05103 -29.33282 -27.12169 -25.85529 -23.03714 -22.52758 -21.89054 -21.67899 -20.85719 -20.41189 -19.76471 -18.07865 -17.46268 -17.01892 -16.62303 -16.23513 -15.88482 -15.63707 -15.16968 -14.76796 -14.52790 -14.24261 -14.08644 -13.70739 -13.59816 -13.40858 -13.00772 -12.74890 -12.52184 -12.40872 -12.29252 -12.14648 -12.10293 -11.77223 -11.50605 -11.22264 -11.14600 -10.93871 -10.89425 -10.74895 -10.58347 -10.06701 -9.97347 -9.91183 -9.71125 -9.51035 -9.16090 -8.75900 -8.14701 -7.45359 -6.22942 -4.24937 2.26566 2.61761 3.08121 3.15644 3.22294 3.23472 3.31962 3.67867 3.82357 4.03562 4.19591 4.23515 4.29787 4.47992 4.67069 4.76751 4.85250 5.05101 5.08049 5.11098 5.29566 5.31309 5.36134 5.43249 5.47238 5.53087 5.65553 5.71659 5.75798 5.86607 5.98253 6.10418 6.18300 6.31768 6.37710 6.48608 6.49160 6.59146 6.62596 6.74999 6.97790 7.29146 7.46161 7.84257 7.91346 8.35104 8.59788 8.61740 8.87094 9.32311 10.89802 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.002351 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.553403 B =11908.647945 C =12683.385593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.168 3.832 4 H 0.098 0.902 5 N -0.737 5.737 6 C 0.716 3.284 7 O -0.559 6.559 8 N -0.644 5.644 9 C 0.280 3.720 10 C -0.281 4.281 11 C 0.049 3.951 12 N -0.321 5.321 13 C 0.232 3.768 14 C -0.533 4.533 15 H 0.085 0.915 16 C 0.075 3.925 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.264 1.264 22 N -0.301 5.301 23 C 0.076 3.924 24 H 0.076 0.924 25 C -0.151 4.151 26 C -0.157 4.157 27 C 0.051 3.949 28 O -0.372 6.372 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.395 0.605 35 H 0.407 0.593 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.951 -16.293 13.273 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.063 3.937 4 H 0.116 0.884 5 N -0.394 5.394 6 C 0.416 3.584 7 O -0.434 6.434 8 N -0.294 5.294 9 C 0.025 3.975 10 C -0.312 4.312 11 C -0.100 4.100 12 N -0.103 5.103 13 C 0.113 3.887 14 C -0.571 4.571 15 H 0.103 0.897 16 C -0.128 4.128 17 N -0.526 5.526 18 Si 0.699 3.301 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.189 1.189 22 N -0.132 5.132 23 C 0.018 3.982 24 H 0.093 0.907 25 C -0.188 4.188 26 C -0.195 4.195 27 C -0.026 4.026 28 O -0.290 6.290 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.229 0.771 35 H 0.241 0.759 36 H 0.181 0.819 37 H 0.185 0.815 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.281 -15.912 12.863 24.952 hybrid contribution -0.228 0.055 -0.516 0.567 sum 14.054 -15.857 12.347 24.524 Atomic orbital electron populations 1.21793 0.94527 1.00370 1.03437 1.21921 0.97237 0.95432 1.02305 1.20844 0.92064 0.94029 0.86774 0.88426 1.44901 1.15858 1.61601 1.17045 1.15487 0.82162 0.78196 0.82557 1.90884 1.50796 1.63395 1.38341 1.41393 1.14611 1.57889 1.15521 1.18776 0.86188 0.98240 0.94272 1.21537 0.93167 1.13826 1.02717 1.22554 1.00624 0.99706 0.87090 1.48572 1.10018 1.41070 1.10606 1.20028 0.87919 0.92243 0.88470 1.21112 1.03606 1.04395 1.28010 0.89667 1.24839 0.97960 0.94656 0.95359 1.69879 1.37718 1.12639 1.32345 0.86905 0.84861 0.79317 0.79016 1.19711 1.20562 1.18856 1.77378 0.95207 1.19950 1.20649 1.23118 0.94173 0.92862 0.88096 0.90661 1.23313 0.96552 0.96836 1.02125 1.23130 0.98101 0.99280 0.98963 1.23145 0.88526 0.93598 0.97302 1.88407 1.47518 1.55773 1.37321 0.92057 0.92185 0.93898 0.92227 0.90494 0.77134 0.75874 0.81929 0.81500 0.94106 0.93362 0.92210 0.89632 0.89795 0.89869 0.90469 0.91137 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.51 37.16 0.32 -1.37 16 2 C -0.13 -1.25 5.55 -26.73 -0.15 -1.40 16 3 C 0.17 1.57 2.03 -67.94 -0.14 1.44 16 4 H 0.10 1.13 7.58 -51.92 -0.39 0.74 16 5 N -0.74 -6.92 4.74 -58.68 -0.28 -7.20 16 6 C 0.72 9.84 7.10 -86.92 -0.62 9.22 16 7 O -0.56 -9.29 10.61 5.28 0.06 -9.23 16 8 N -0.64 -9.61 5.46 -15.50 -0.08 -9.70 16 9 C 0.28 5.49 8.11 -154.36 -1.25 4.24 16 10 C -0.28 -5.42 9.61 -39.83 -0.38 -5.81 16 11 C 0.05 0.95 11.44 -17.24 -0.20 0.76 16 12 N -0.32 -7.26 3.67 -62.55 -0.23 -7.49 16 13 C 0.23 5.51 5.33 -5.19 -0.03 5.48 16 14 C -0.53 -15.04 9.79 -34.44 -0.34 -15.37 16 15 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 16 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 18 Si 0.87 20.13 27.47 -169.99 -4.67 15.46 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 22 N -0.30 -6.84 12.43 31.44 0.39 -6.45 16 23 C 0.08 0.57 3.03 -25.70 -0.08 0.49 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 C -0.15 -1.01 6.29 -24.48 -0.15 -1.16 16 26 C -0.16 -0.86 7.02 -24.79 -0.17 -1.03 16 27 C 0.05 0.33 7.79 37.88 0.30 0.62 16 28 O -0.37 -3.31 10.39 -35.23 -0.37 -3.68 16 29 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 30 H 0.06 0.83 5.65 -51.93 -0.29 0.53 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.74 7.62 -51.93 -0.40 0.34 16 34 H 0.40 2.59 8.62 -40.82 -0.35 2.23 16 35 H 0.41 4.93 8.84 -40.82 -0.36 4.57 16 36 H 0.16 3.06 5.91 -52.49 -0.31 2.75 16 37 H 0.17 2.56 8.06 -52.48 -0.42 2.13 16 38 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 39 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -33.95 370.89 -8.90 -42.85 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -7.09 Total: 7.55 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.99 Total: -1.87 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.57 Total: -56.68 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.31 Total: -12.91 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.95 -8.90 -42.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163793017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.351 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds