Wall clock time and date at job start Tue Mar 31 2020 12:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47533 * 2 1 4 4 H 1.09008 * 109.46823 * 54.99922 * 3 2 1 5 5 N 1.46496 * 109.47365 * 295.00343 * 3 2 1 6 6 C 1.34769 * 120.00315 * 84.99500 * 5 3 2 7 7 O 1.21595 * 120.00066 * 0.02562 * 6 5 3 8 8 N 1.34779 * 120.00183 * 180.02562 * 6 5 3 9 9 C 1.40197 * 120.00233 * 180.02562 * 8 6 5 10 10 C 1.40404 * 125.96941 * 359.97438 * 9 8 6 11 11 C 1.35241 * 107.86499 * 180.02562 * 10 9 8 12 12 N 1.34964 * 107.85989 * 0.02562 * 11 10 9 13 13 C 1.46506 * 125.97432 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46928 * 125.00157 * 13 12 11 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99749 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00236 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47160 * 89.99730 * 18 16 14 20 20 H 1.48503 * 109.47061 * 209.99752 * 18 16 14 21 21 H 1.48500 * 109.46598 * 329.99398 * 18 16 14 22 22 N 1.31212 * 125.97643 * 180.30439 * 9 8 6 23 23 C 1.52998 * 109.47426 * 174.99680 * 3 2 1 24 24 H 1.09001 * 110.27099 * 60.63827 * 23 3 2 25 25 C 1.54949 * 110.31425 * 182.83564 * 23 3 2 26 26 C 1.55300 * 100.94279 * 155.36159 * 25 23 3 27 27 C 1.54381 * 102.25558 * 325.86702 * 26 25 23 28 28 O 1.43240 * 107.58561 * 21.35893 * 27 26 25 29 29 H 1.09001 * 109.46693 * 300.00232 * 1 2 3 30 30 H 1.08998 * 109.46653 * 60.00034 * 1 2 3 31 31 H 1.08993 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47090 * 240.00132 * 2 1 3 33 33 H 1.09004 * 109.47064 * 120.00499 * 2 1 3 34 34 H 0.97007 * 119.99761 * 265.00118 * 5 3 2 35 35 H 0.96999 * 119.99949 * 0.02562 * 8 6 5 36 36 H 1.07998 * 126.06614 * 359.97438 * 10 9 8 37 37 H 1.08009 * 126.07229 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.47073 * 244.99985 * 13 12 11 39 39 H 1.09000 * 109.47212 * 5.00067 * 13 12 11 40 40 H 0.97001 * 119.99269 * 180.02562 * 17 16 14 41 41 H 1.09003 * 111.12217 * 273.28619 * 25 23 3 42 42 H 1.09003 * 111.12289 * 37.44177 * 25 23 3 43 43 H 1.09001 * 110.84747 * 207.67235 * 26 25 23 44 44 H 1.09004 * 111.01877 * 84.14065 * 26 25 23 45 45 H 1.08991 * 109.82846 * 261.84549 * 27 26 25 46 46 H 1.08996 * 109.82624 * 140.86854 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6526 2.0975 -1.2517 6 6 0.4353 2.6644 -1.3669 7 8 -0.3411 2.6326 -0.4316 8 7 0.0786 3.2666 -2.5187 9 6 -1.1874 3.8568 -2.6383 10 6 -2.1775 3.8935 -1.6435 11 6 -3.2478 4.5490 -2.1473 12 7 -2.9515 4.9146 -3.4123 13 6 -3.8324 5.6475 -4.3250 14 6 -3.1260 6.8828 -4.8211 15 1 -2.1212 7.1000 -4.4899 16 6 -3.7620 7.7352 -5.6985 17 7 -3.1456 8.8135 -6.1310 18 14 -5.4997 7.3592 -6.2719 19 1 -6.4739 7.9876 -5.3440 20 1 -5.6979 7.9021 -7.6398 21 1 -5.7084 5.8890 -6.2877 22 7 -1.6564 4.4662 -3.7015 23 6 3.5649 1.4442 0.1258 24 1 4.0139 0.9176 -0.7163 25 6 4.0969 2.8976 0.1994 26 6 5.4425 2.6817 0.9440 27 6 5.1056 1.5159 1.8983 28 8 3.9638 0.8356 1.3643 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.2721 2.1231 -1.9978 35 1 0.6978 3.2917 -3.2649 36 1 -2.0987 3.4722 -0.6522 37 1 -4.1751 4.7452 -1.6294 38 1 -4.0889 5.0109 -5.1719 39 1 -4.7422 5.9360 -3.7986 40 1 -3.5933 9.4133 -6.7480 41 1 4.2606 3.3070 -0.7974 42 1 3.4256 3.5328 0.7775 43 1 5.7231 3.5733 1.5046 44 1 6.2328 2.3981 0.2488 45 1 4.8741 1.9049 2.8898 46 1 5.9507 0.8300 1.9568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163793017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:30 Heat of formation + Delta-G solvation = -13.698945 kcal Electronic energy + Delta-G solvation = -27148.421500 eV Core-core repulsion = 23267.318538 eV Total energy + Delta-G solvation = -3881.102962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.25662 -41.28989 -40.23160 -37.12864 -35.98904 -35.21113 -33.62512 -33.09458 -32.46831 -30.95916 -30.71545 -28.89473 -26.67637 -24.67603 -23.48846 -22.94691 -22.29197 -21.94428 -21.67368 -21.14389 -19.23949 -19.07085 -18.31966 -17.91467 -17.09439 -16.93749 -16.76422 -16.31676 -16.15564 -15.63204 -15.38398 -15.30865 -14.84382 -14.69750 -14.47539 -14.28847 -14.16263 -13.82932 -13.78156 -13.48537 -13.18551 -12.95705 -12.69021 -12.52772 -12.43633 -12.28961 -12.20241 -11.82039 -11.78998 -11.72894 -11.64157 -11.51869 -11.40804 -11.02630 -10.85876 -10.49281 -10.10578 -9.70882 -9.00610 -8.36595 -6.46456 1.05622 1.13077 1.37389 1.40431 1.50075 1.74136 2.05575 2.29810 2.44908 2.81280 2.96104 3.28253 3.44898 3.62534 3.95176 3.98614 4.11886 4.14281 4.22905 4.23796 4.34827 4.44817 4.56114 4.62837 4.70958 4.80922 4.83597 4.86819 4.92038 4.96700 4.96931 4.99324 5.06286 5.08643 5.17633 5.22178 5.24507 5.27397 5.52072 5.55387 5.84668 5.95803 6.04674 6.05178 6.43774 6.58901 6.76118 7.15151 7.17599 7.48332 8.80482 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.002351 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.553403 B =11908.647945 C =12683.385593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.171 3.829 4 H 0.072 0.928 5 N -0.714 5.714 6 C 0.716 3.284 7 O -0.587 6.587 8 N -0.638 5.638 9 C 0.287 3.713 10 C -0.291 4.291 11 C 0.058 3.942 12 N -0.346 5.346 13 C 0.240 3.760 14 C -0.545 4.545 15 H 0.027 0.973 16 C 0.014 3.986 17 N -0.942 5.942 18 Si 0.955 3.045 19 H -0.254 1.254 20 H -0.281 1.281 21 H -0.240 1.240 22 N -0.351 5.351 23 C 0.081 3.919 24 H 0.096 0.904 25 C -0.153 4.153 26 C -0.151 4.151 27 C 0.044 3.956 28 O -0.392 6.392 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.413 0.587 35 H 0.419 0.581 36 H 0.168 0.832 37 H 0.208 0.792 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.272 0.728 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.657 -17.975 13.521 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C 0.066 3.934 4 H 0.090 0.910 5 N -0.371 5.371 6 C 0.416 3.584 7 O -0.464 6.464 8 N -0.290 5.290 9 C 0.031 3.969 10 C -0.322 4.322 11 C -0.090 4.090 12 N -0.128 5.128 13 C 0.120 3.880 14 C -0.583 4.583 15 H 0.045 0.955 16 C -0.185 4.185 17 N -0.581 5.581 18 Si 0.776 3.224 19 H -0.178 1.178 20 H -0.206 1.206 21 H -0.163 1.163 22 N -0.181 5.181 23 C 0.023 3.977 24 H 0.114 0.886 25 C -0.190 4.190 26 C -0.188 4.188 27 C -0.032 4.032 28 O -0.312 6.312 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.250 0.750 35 H 0.256 0.744 36 H 0.186 0.814 37 H 0.225 0.775 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.059 -17.632 13.129 26.094 hybrid contribution 0.037 0.542 -0.463 0.713 sum 14.095 -17.090 12.666 25.518 Atomic orbital electron populations 1.21714 0.96134 1.00336 1.01438 1.21875 0.95596 0.95606 1.03197 1.20829 0.93626 0.93448 0.85525 0.90965 1.44677 1.14524 1.60116 1.17822 1.15607 0.83031 0.78073 0.81718 1.90861 1.52035 1.64390 1.39154 1.41408 1.13447 1.57627 1.16541 1.19099 0.87548 0.96718 0.93512 1.21723 0.93367 1.14249 1.02874 1.23229 1.01954 0.98008 0.85797 1.48463 1.10252 1.42442 1.11663 1.19865 0.88517 0.90237 0.89382 1.21232 1.01700 1.06769 1.28607 0.95509 1.25922 1.03570 0.93966 0.95049 1.70055 1.40397 1.14225 1.33467 0.85621 0.77866 0.80558 0.78368 1.17784 1.20643 1.16270 1.77294 0.96191 1.22095 1.22561 1.23103 0.92415 0.93642 0.88508 0.88608 1.23318 0.96949 0.96027 1.02751 1.23126 0.97643 0.99164 0.98889 1.23308 0.88226 0.94237 0.97447 1.88380 1.48518 1.56381 1.37887 0.93868 0.94270 0.92932 0.90671 0.90130 0.75025 0.74400 0.81443 0.77518 0.93753 0.90174 0.91914 0.88375 0.91627 0.89224 0.89016 0.91226 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.51 71.98 0.61 -2.60 16 2 C -0.12 -2.23 5.55 30.59 0.17 -2.06 16 3 C 0.17 3.04 2.03 44.99 0.09 3.13 16 4 H 0.07 1.70 7.58 -2.38 -0.02 1.68 16 5 N -0.71 -12.61 4.74 -457.83 -2.17 -14.78 16 6 C 0.72 19.43 7.10 179.06 1.27 20.70 16 7 O -0.59 -19.66 10.61 -4.01 -0.04 -19.70 16 8 N -0.64 -18.97 5.46 -321.22 -1.75 -20.72 16 9 C 0.29 11.35 8.11 133.31 1.08 12.43 16 10 C -0.29 -11.12 9.61 22.11 0.21 -10.91 16 11 C 0.06 2.16 11.44 83.52 0.96 3.12 16 12 N -0.35 -15.59 3.67 -351.82 -1.29 -16.88 16 13 C 0.24 11.16 5.33 85.63 0.46 11.61 16 14 C -0.54 -31.52 9.79 25.60 0.25 -31.27 16 15 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 16 C 0.01 0.77 5.47 84.65 0.46 1.24 16 17 N -0.94 -58.11 13.96 21.45 0.30 -57.81 16 18 Si 0.96 40.79 27.47 68.60 1.88 42.67 16 19 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 22 N -0.35 -16.25 12.43 -54.43 -0.68 -16.92 16 23 C 0.08 1.07 3.03 31.26 0.09 1.17 16 24 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 25 C -0.15 -1.81 6.29 32.05 0.20 -1.60 16 26 C -0.15 -1.33 7.02 31.85 0.22 -1.11 16 27 C 0.04 0.50 7.79 72.45 0.56 1.06 16 28 O -0.39 -6.41 10.39 -148.98 -1.55 -7.96 16 29 H 0.04 1.13 7.84 -2.39 -0.02 1.11 16 30 H 0.04 1.06 5.65 -2.39 -0.01 1.05 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.43 7.62 -2.38 -0.02 1.42 16 34 H 0.41 4.56 8.62 -92.70 -0.80 3.76 16 35 H 0.42 10.00 8.84 -92.71 -0.82 9.18 16 36 H 0.17 6.26 5.91 -2.91 -0.02 6.24 16 37 H 0.21 5.73 8.06 -2.91 -0.02 5.70 16 38 H 0.04 2.02 7.20 -2.38 -0.02 2.01 16 39 H 0.08 3.21 7.50 -2.39 -0.02 3.19 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 1.03 8.06 -2.39 -0.02 1.01 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -77.66 370.89 0.69 -76.98 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.67 Total: 30.22 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 6.65 Total: 4.91 kcal Atomic # 7 Polarization: -121.53 SS G_CDS: -5.59 Total: -127.12 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -1.59 Total: -27.66 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.88 Total: 42.67 kcal Total: -77.66 0.69 -76.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163793017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.279 kcal (2) G-P(sol) polarization free energy of solvation -77.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds