Wall clock time and date at job start Tue Mar 31 2020 12:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47399 * 2 1 4 4 H 1.08994 * 109.47184 * 304.99741 * 3 2 1 5 5 N 1.46500 * 109.47144 * 65.00123 * 3 2 1 6 6 C 1.34781 * 120.00004 * 274.99711 * 5 3 2 7 7 O 1.21590 * 119.99507 * 0.02562 * 6 5 3 8 8 N 1.34771 * 119.99996 * 180.02562 * 6 5 3 9 9 C 1.40197 * 119.99982 * 180.02562 * 8 6 5 10 10 C 1.40404 * 125.96950 * 359.97438 * 9 8 6 11 11 C 1.35241 * 107.86499 * 179.97438 * 10 9 8 12 12 N 1.34964 * 107.85989 * 0.02562 * 11 10 9 13 13 C 1.46506 * 125.97432 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46928 * 125.00157 * 13 12 11 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00518 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99987 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46948 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47174 * 120.00320 * 18 16 14 21 21 H 1.48497 * 109.47378 * 240.00235 * 18 16 14 22 22 N 1.31212 * 125.97642 * 180.27765 * 9 8 6 23 23 C 1.53004 * 109.46987 * 184.99874 * 3 2 1 24 24 H 1.08995 * 109.86977 * 64.00006 * 23 3 2 25 25 C 1.54103 * 109.87691 * 184.99921 * 23 3 2 26 26 C 1.54810 * 104.18604 * 121.45348 * 25 23 3 27 27 C 1.54996 * 102.09175 * 20.88417 * 26 25 23 28 28 O 1.43745 * 109.88055 * 302.83192 * 23 3 2 29 29 H 1.09000 * 109.46991 * 60.00070 * 1 2 3 30 30 H 1.08994 * 109.47580 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46839 * 300.00388 * 1 2 3 32 32 H 1.09000 * 109.46839 * 239.99612 * 2 1 3 33 33 H 1.09000 * 109.46991 * 119.99930 * 2 1 3 34 34 H 0.96999 * 120.00183 * 94.99602 * 5 3 2 35 35 H 0.96999 * 120.00191 * 359.97438 * 8 6 5 36 36 H 1.07998 * 126.06614 * 359.96181 * 10 9 8 37 37 H 1.08009 * 126.07229 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.47073 * 244.99985 * 13 12 11 39 39 H 1.09000 * 109.47212 * 5.00067 * 13 12 11 40 40 H 0.96992 * 120.00316 * 179.97438 * 17 16 14 41 41 H 1.08996 * 110.49091 * 240.13028 * 25 23 3 42 42 H 1.09002 * 110.48577 * 2.64878 * 25 23 3 43 43 H 1.09004 * 110.90529 * 139.07603 * 26 25 23 44 44 H 1.09003 * 110.91154 * 262.64573 * 26 25 23 45 45 H 1.09000 * 110.62231 * 81.47664 * 27 26 25 46 46 H 1.09001 * 110.61497 * 204.47200 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4353 2.6645 1.3670 7 8 -0.3414 2.6319 0.4320 8 7 0.0790 3.2675 2.5184 9 6 -1.1874 3.8568 2.6384 10 6 -2.1779 3.8926 1.6439 11 6 -3.2485 4.5475 2.1480 12 7 -2.9515 4.9144 3.4124 13 6 -3.8321 5.6482 4.3248 14 6 -3.9881 4.8704 5.6062 15 1 -3.4816 3.9244 5.7287 16 6 -4.7766 5.3671 6.6224 17 7 -5.3929 6.5192 6.4734 18 14 -4.9705 4.4027 8.2104 19 1 -4.1808 3.1478 8.1270 20 1 -4.4808 5.2204 9.3491 21 1 -6.4036 4.0734 8.4177 22 7 -1.6522 4.4762 3.6976 23 6 3.5649 1.4441 -0.1257 24 1 3.8579 1.0222 -1.0870 25 6 4.0993 2.8842 -0.0010 26 6 5.0673 2.8265 1.2058 27 6 5.3952 1.3138 1.2869 28 8 4.1445 0.6791 0.9444 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2720 2.1230 1.9978 35 1 0.6984 3.2931 3.2644 36 1 -2.0988 3.4721 0.6523 37 1 -4.1764 4.7422 1.6306 38 1 -3.3978 6.6240 4.5427 39 1 -4.8087 5.7809 3.8591 40 1 -5.9479 6.8684 7.1881 41 1 4.6344 3.1723 -0.9058 42 1 3.2824 3.5785 0.1955 43 1 5.9673 3.4096 1.0107 44 1 4.5747 3.1677 2.1163 45 1 6.1696 1.0497 0.5666 46 1 5.7002 1.0408 2.2972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163793138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:34 Heat of formation + Delta-G solvation = 5.169262 kcal Electronic energy + Delta-G solvation = -27444.601781 eV Core-core repulsion = 23564.317006 eV Total energy + Delta-G solvation = -3880.284776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.90480 -40.23067 -39.19770 -35.95605 -34.51999 -33.39543 -32.60873 -32.11629 -30.71586 -29.98539 -29.22258 -26.65682 -25.77524 -23.23077 -22.83490 -22.06457 -21.39937 -20.67213 -20.29954 -19.74926 -18.09239 -17.08919 -16.62117 -16.55218 -16.29756 -15.85782 -15.62110 -15.18198 -14.68654 -14.31012 -14.23549 -13.98993 -13.93250 -13.53978 -13.37354 -12.77750 -12.69972 -12.36860 -12.27625 -12.17014 -12.14109 -11.75240 -11.62958 -11.37737 -11.28135 -11.05369 -10.86475 -10.86013 -10.79589 -10.33477 -10.24024 -10.11324 -9.98157 -9.61544 -9.43702 -9.06256 -8.61740 -8.05264 -7.36476 -6.22386 -4.27171 2.44796 2.71918 3.16889 3.23570 3.31070 3.37788 3.43540 3.66703 3.90045 4.13026 4.23091 4.31949 4.42609 4.49878 4.58409 4.82850 4.92802 5.03665 5.12778 5.15930 5.28695 5.30190 5.40105 5.45388 5.54467 5.57812 5.64970 5.70431 5.85775 5.88006 6.02120 6.19575 6.29278 6.38878 6.48096 6.55844 6.58951 6.67479 6.91944 7.05620 7.16438 7.55563 7.72441 7.86679 8.04035 8.10802 8.67636 8.71009 8.84144 9.38460 10.86329 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.002540 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.848806 B =11022.377452 C =11407.686644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.170 3.830 4 H 0.101 0.899 5 N -0.733 5.733 6 C 0.713 3.287 7 O -0.563 6.563 8 N -0.645 5.645 9 C 0.277 3.723 10 C -0.285 4.285 11 C 0.049 3.951 12 N -0.321 5.321 13 C 0.259 3.741 14 C -0.526 4.526 15 H 0.069 0.931 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.282 1.282 22 N -0.309 5.309 23 C 0.069 3.931 24 H 0.083 0.917 25 C -0.155 4.155 26 C -0.156 4.156 27 C 0.044 3.956 28 O -0.367 6.367 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.398 0.602 35 H 0.405 0.595 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.266 0.734 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.721 -9.283 -14.169 26.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.064 3.936 4 H 0.118 0.882 5 N -0.390 5.390 6 C 0.412 3.588 7 O -0.438 6.438 8 N -0.295 5.295 9 C 0.023 3.977 10 C -0.316 4.316 11 C -0.101 4.101 12 N -0.103 5.103 13 C 0.141 3.859 14 C -0.565 4.565 15 H 0.087 0.913 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.734 3.266 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 N -0.140 5.140 23 C 0.010 3.990 24 H 0.101 0.899 25 C -0.193 4.193 26 C -0.194 4.194 27 C -0.032 4.032 28 O -0.286 6.286 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.232 0.768 35 H 0.239 0.761 36 H 0.179 0.821 37 H 0.184 0.816 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.953 -8.939 -13.589 25.742 hybrid contribution 0.370 -0.408 0.812 0.982 sum 20.323 -9.346 -12.776 25.761 Atomic orbital electron populations 1.21806 0.94542 1.00409 1.03463 1.21881 0.97074 0.95525 1.02400 1.21078 0.91538 0.93933 0.87015 0.88153 1.44993 1.15625 1.60980 1.17397 1.15597 0.82293 0.78292 0.82581 1.90870 1.50824 1.63718 1.38436 1.41416 1.14616 1.57953 1.15503 1.18786 0.86115 0.98659 0.94162 1.21507 0.93379 1.13990 1.02765 1.22554 1.00265 1.00056 0.87181 1.49035 1.09632 1.41309 1.10344 1.19724 0.86758 0.91523 0.87888 1.21307 1.29563 1.06852 0.98741 0.91263 1.24946 0.95076 0.95135 0.98981 1.69925 1.31056 1.18592 1.33869 0.86284 0.77889 0.80008 0.82391 1.19558 1.20726 1.20773 1.77318 0.95631 1.20790 1.20291 1.23128 0.92836 0.91205 0.91810 0.89929 1.23019 1.00040 0.97150 0.99075 1.23148 0.99980 0.97194 0.99047 1.23581 0.87136 0.91290 1.01204 1.88932 1.34779 1.51526 1.53413 0.92191 0.93906 0.92032 0.91563 0.91240 0.76821 0.76057 0.82133 0.81635 0.93818 0.92581 0.92412 0.90508 0.89600 0.90165 0.90370 0.92171 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.51 37.16 0.32 -1.44 16 2 C -0.13 -1.27 5.36 -26.73 -0.14 -1.42 16 3 C 0.17 1.56 2.04 -67.93 -0.14 1.42 16 4 H 0.10 1.02 7.58 -51.93 -0.39 0.63 16 5 N -0.73 -7.53 4.08 -58.68 -0.24 -7.77 16 6 C 0.71 10.18 7.10 -86.92 -0.62 9.56 16 7 O -0.56 -9.50 10.60 5.29 0.06 -9.44 16 8 N -0.65 -10.05 5.45 -15.50 -0.08 -10.13 16 9 C 0.28 5.59 8.11 -154.36 -1.25 4.34 16 10 C -0.28 -5.69 9.61 -39.83 -0.38 -6.07 16 11 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 12 N -0.32 -7.55 3.66 -62.55 -0.23 -7.78 16 13 C 0.26 6.63 6.26 -5.19 -0.03 6.60 16 14 C -0.53 -14.77 9.24 -34.44 -0.32 -15.08 16 15 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -25.51 13.29 55.43 0.74 -24.77 16 18 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 N -0.31 -7.17 12.43 31.44 0.39 -6.78 16 23 C 0.07 0.49 3.21 -26.15 -0.08 0.41 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 25 C -0.16 -0.97 6.30 -25.20 -0.16 -1.12 16 26 C -0.16 -0.83 7.15 -24.72 -0.18 -1.01 16 27 C 0.04 0.25 7.72 38.21 0.29 0.55 16 28 O -0.37 -2.97 10.18 -35.23 -0.36 -3.33 16 29 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.91 5.64 -51.93 -0.29 0.62 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.73 7.79 -51.93 -0.40 0.32 16 34 H 0.40 3.45 8.27 -40.82 -0.34 3.11 16 35 H 0.41 5.24 8.84 -40.82 -0.36 4.88 16 36 H 0.16 3.12 5.91 -52.49 -0.31 2.81 16 37 H 0.17 2.75 8.06 -52.48 -0.42 2.33 16 38 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.65 7.16 -51.93 -0.37 0.28 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -32.38 372.62 -9.19 -41.57 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.07 Total: 7.20 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.99 Total: -0.87 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.57 Total: -57.23 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.30 Total: -12.77 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.38 -9.19 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163793138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.743 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds