Wall clock time and date at job start Tue Mar 31 2020 12:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47399 * 2 1 4 4 H 1.08994 * 109.47184 * 304.99741 * 3 2 1 5 5 N 1.46500 * 109.47144 * 65.00123 * 3 2 1 6 6 C 1.34781 * 120.00004 * 274.99711 * 5 3 2 7 7 O 1.21590 * 119.99507 * 0.02562 * 6 5 3 8 8 N 1.34771 * 119.99996 * 180.02562 * 6 5 3 9 9 C 1.40197 * 119.99982 * 180.02562 * 8 6 5 10 10 C 1.40404 * 125.96950 * 359.97438 * 9 8 6 11 11 C 1.35241 * 107.86499 * 179.97438 * 10 9 8 12 12 N 1.34964 * 107.85989 * 0.02562 * 11 10 9 13 13 C 1.46506 * 125.97432 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46928 * 125.00157 * 13 12 11 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00518 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99987 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46948 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47174 * 120.00320 * 18 16 14 21 21 H 1.48497 * 109.47378 * 240.00235 * 18 16 14 22 22 N 1.31212 * 125.97642 * 180.27765 * 9 8 6 23 23 C 1.53004 * 109.46987 * 184.99874 * 3 2 1 24 24 H 1.08995 * 109.86977 * 64.00006 * 23 3 2 25 25 C 1.54103 * 109.87691 * 184.99921 * 23 3 2 26 26 C 1.54810 * 104.18604 * 121.45348 * 25 23 3 27 27 C 1.54996 * 102.09175 * 20.88417 * 26 25 23 28 28 O 1.43745 * 109.88055 * 302.83192 * 23 3 2 29 29 H 1.09000 * 109.46991 * 60.00070 * 1 2 3 30 30 H 1.08994 * 109.47580 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46839 * 300.00388 * 1 2 3 32 32 H 1.09000 * 109.46839 * 239.99612 * 2 1 3 33 33 H 1.09000 * 109.46991 * 119.99930 * 2 1 3 34 34 H 0.96999 * 120.00183 * 94.99602 * 5 3 2 35 35 H 0.96999 * 120.00191 * 359.97438 * 8 6 5 36 36 H 1.07998 * 126.06614 * 359.96181 * 10 9 8 37 37 H 1.08009 * 126.07229 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.47073 * 244.99985 * 13 12 11 39 39 H 1.09000 * 109.47212 * 5.00067 * 13 12 11 40 40 H 0.96992 * 120.00316 * 179.97438 * 17 16 14 41 41 H 1.08996 * 110.49091 * 240.13028 * 25 23 3 42 42 H 1.09002 * 110.48577 * 2.64878 * 25 23 3 43 43 H 1.09004 * 110.90529 * 139.07603 * 26 25 23 44 44 H 1.09003 * 110.91154 * 262.64573 * 26 25 23 45 45 H 1.09000 * 110.62231 * 81.47664 * 27 26 25 46 46 H 1.09001 * 110.61497 * 204.47200 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4353 2.6645 1.3670 7 8 -0.3414 2.6319 0.4320 8 7 0.0790 3.2675 2.5184 9 6 -1.1874 3.8568 2.6384 10 6 -2.1779 3.8926 1.6439 11 6 -3.2485 4.5475 2.1480 12 7 -2.9515 4.9144 3.4124 13 6 -3.8321 5.6482 4.3248 14 6 -3.9881 4.8704 5.6062 15 1 -3.4816 3.9244 5.7287 16 6 -4.7766 5.3671 6.6224 17 7 -5.3929 6.5192 6.4734 18 14 -4.9705 4.4027 8.2104 19 1 -4.1808 3.1478 8.1270 20 1 -4.4808 5.2204 9.3491 21 1 -6.4036 4.0734 8.4177 22 7 -1.6522 4.4762 3.6976 23 6 3.5649 1.4441 -0.1257 24 1 3.8579 1.0222 -1.0870 25 6 4.0993 2.8842 -0.0010 26 6 5.0673 2.8265 1.2058 27 6 5.3952 1.3138 1.2869 28 8 4.1445 0.6791 0.9444 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2720 2.1230 1.9978 35 1 0.6984 3.2931 3.2644 36 1 -2.0988 3.4721 0.6523 37 1 -4.1764 4.7422 1.6306 38 1 -3.3978 6.6240 4.5427 39 1 -4.8087 5.7809 3.8591 40 1 -5.9479 6.8684 7.1881 41 1 4.6344 3.1723 -0.9058 42 1 3.2824 3.5785 0.1955 43 1 5.9673 3.4096 1.0107 44 1 4.5747 3.1677 2.1163 45 1 6.1696 1.0497 0.5666 46 1 5.7002 1.0408 2.2972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163793138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:33 Heat of formation + Delta-G solvation = -15.827976 kcal Electronic energy + Delta-G solvation = -27445.512290 eV Core-core repulsion = 23564.317006 eV Total energy + Delta-G solvation = -3881.195284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.23940 -41.34403 -40.13438 -36.94484 -35.93316 -35.27284 -33.52750 -32.97651 -32.26728 -30.90994 -30.66550 -28.51231 -26.58179 -25.03563 -23.41410 -23.37602 -22.09117 -21.93851 -21.35868 -21.17721 -19.27007 -18.68907 -18.24708 -17.58692 -17.17571 -16.91338 -16.56925 -16.54458 -16.05958 -15.72069 -15.49365 -15.24262 -14.60033 -14.48203 -14.46458 -14.19937 -14.15244 -13.77273 -13.63373 -13.51806 -13.02275 -12.92793 -12.72421 -12.61724 -12.40263 -12.30231 -12.05658 -12.01259 -11.85139 -11.65461 -11.55621 -11.45279 -11.33353 -10.98983 -10.71867 -10.64976 -10.03954 -9.69023 -9.01673 -8.32466 -6.46658 1.11293 1.18310 1.37083 1.38501 1.51861 1.76332 2.14977 2.36528 2.47222 2.92812 2.98800 3.19023 3.53788 3.74164 3.99484 4.03209 4.10032 4.20760 4.25930 4.30847 4.41824 4.48231 4.67332 4.70641 4.82185 4.85464 4.89547 4.92741 4.98211 4.98861 5.02861 5.03362 5.09534 5.14355 5.21360 5.22328 5.28340 5.53648 5.57518 5.62197 5.78230 5.90871 5.99423 6.02181 6.31810 6.65234 6.80224 7.18797 7.23398 7.51211 8.75080 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.002540 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.848806 B =11022.377452 C =11407.686644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.168 3.832 4 H 0.093 0.907 5 N -0.713 5.713 6 C 0.713 3.287 7 O -0.588 6.588 8 N -0.640 5.640 9 C 0.287 3.713 10 C -0.289 4.289 11 C 0.054 3.946 12 N -0.346 5.346 13 C 0.273 3.727 14 C -0.546 4.546 15 H 0.051 0.949 16 C 0.018 3.982 17 N -0.921 5.921 18 Si 0.972 3.028 19 H -0.275 1.275 20 H -0.273 1.273 21 H -0.270 1.270 22 N -0.350 5.350 23 C 0.075 3.925 24 H 0.100 0.900 25 C -0.154 4.154 26 C -0.154 4.154 27 C 0.042 3.958 28 O -0.386 6.386 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.032 0.968 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.408 0.592 35 H 0.417 0.583 36 H 0.169 0.831 37 H 0.199 0.801 38 H 0.021 0.979 39 H 0.058 0.942 40 H 0.272 0.728 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.285 -10.418 -14.638 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.063 3.937 4 H 0.111 0.889 5 N -0.369 5.369 6 C 0.412 3.588 7 O -0.465 6.465 8 N -0.292 5.292 9 C 0.031 3.969 10 C -0.320 4.320 11 C -0.095 4.095 12 N -0.128 5.128 13 C 0.154 3.846 14 C -0.584 4.584 15 H 0.069 0.931 16 C -0.182 4.182 17 N -0.560 5.560 18 Si 0.796 3.204 19 H -0.200 1.200 20 H -0.198 1.198 21 H -0.195 1.195 22 N -0.182 5.182 23 C 0.016 3.984 24 H 0.118 0.882 25 C -0.191 4.191 26 C -0.191 4.191 27 C -0.034 4.034 28 O -0.305 6.305 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.244 0.756 35 H 0.253 0.747 36 H 0.186 0.814 37 H 0.216 0.784 38 H 0.039 0.961 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 21.575 -10.091 -14.070 27.663 hybrid contribution -0.022 -0.111 0.846 0.853 sum 21.553 -10.202 -13.225 27.267 Atomic orbital electron populations 1.21731 0.96360 1.00175 1.01477 1.21835 0.95214 0.95982 1.03184 1.21218 0.93335 0.93260 0.85888 0.88921 1.44894 1.14150 1.59606 1.18288 1.15717 0.83121 0.78162 0.81756 1.90844 1.51900 1.64625 1.39130 1.41447 1.13378 1.57739 1.16591 1.19081 0.87464 0.97063 0.93291 1.21681 0.93341 1.14011 1.02991 1.23155 1.01552 0.98751 0.86018 1.48795 1.09990 1.42874 1.11170 1.19317 0.86968 0.90512 0.87772 1.21429 1.30019 1.06585 1.00351 0.93069 1.25737 0.94477 0.96015 1.01996 1.69997 1.31310 1.19616 1.35067 0.85300 0.78251 0.78395 0.78463 1.19985 1.19788 1.19486 1.77237 0.96056 1.22842 1.22022 1.23105 0.90893 0.91925 0.92430 0.88205 1.23004 0.99845 0.96115 1.00186 1.23149 1.00273 0.97279 0.98427 1.23726 0.86511 0.91190 1.02000 1.88912 1.35865 1.52066 1.53691 0.93146 0.93282 0.94908 0.89477 0.91650 0.75625 0.74659 0.81391 0.78387 0.96133 0.92417 0.91841 0.89080 0.91172 0.88816 0.90832 0.90969 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.51 71.98 0.61 -2.72 16 2 C -0.12 -2.23 5.36 30.59 0.16 -2.07 16 3 C 0.17 2.85 2.04 44.99 0.09 2.94 16 4 H 0.09 1.78 7.58 -2.39 -0.02 1.76 16 5 N -0.71 -13.96 4.08 -457.82 -1.87 -15.83 16 6 C 0.71 20.06 7.10 179.05 1.27 21.33 16 7 O -0.59 -19.72 10.60 -4.00 -0.04 -19.77 16 8 N -0.64 -19.82 5.45 -321.23 -1.75 -21.58 16 9 C 0.29 11.65 8.11 133.31 1.08 12.74 16 10 C -0.29 -11.51 9.61 22.11 0.21 -11.29 16 11 C 0.05 2.16 11.44 83.52 0.96 3.12 16 12 N -0.35 -16.59 3.66 -351.82 -1.29 -17.88 16 13 C 0.27 14.40 6.26 85.63 0.54 14.94 16 14 C -0.55 -31.24 9.24 25.60 0.24 -31.00 16 15 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 16 C 0.02 1.00 5.46 84.65 0.46 1.47 16 17 N -0.92 -52.64 13.29 21.45 0.28 -52.35 16 18 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 N -0.35 -16.60 12.43 -54.43 -0.68 -17.27 16 23 C 0.07 0.89 3.21 30.97 0.10 0.99 16 24 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 25 C -0.15 -1.59 6.30 31.59 0.20 -1.39 16 26 C -0.15 -1.30 7.15 31.89 0.23 -1.07 16 27 C 0.04 0.37 7.72 72.67 0.56 0.93 16 28 O -0.39 -5.36 10.18 -148.98 -1.52 -6.88 16 29 H 0.05 1.28 7.84 -2.39 -0.02 1.26 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.03 0.96 5.64 -2.39 -0.01 0.95 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.26 7.79 -2.39 -0.02 1.25 16 34 H 0.41 6.55 8.27 -92.71 -0.77 5.78 16 35 H 0.42 10.66 8.84 -92.71 -0.82 9.84 16 36 H 0.17 6.47 5.91 -2.91 -0.02 6.45 16 37 H 0.20 6.36 8.06 -2.91 -0.02 6.34 16 38 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 40 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.97 7.16 -2.39 -0.02 0.95 16 43 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -70.15 372.62 1.30 -68.85 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.58 Total: 27.66 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 6.71 Total: 8.92 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -5.30 Total: -124.91 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -1.56 Total: -26.64 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.15 1.30 -68.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163793138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.024 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds