Wall clock time and date at job start Tue Mar 31 2020 14:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.50977 * 2 1 4 4 C 1.53300 * 109.54982 * 120.12396 * 2 1 3 5 5 N 1.47155 * 108.37973 * 172.25369 * 4 2 1 6 6 C 1.34772 * 120.98307 * 129.48956 * 5 4 2 7 7 O 1.21591 * 119.99967 * 175.01174 * 6 5 4 8 8 N 1.34773 * 119.99956 * 354.99960 * 6 5 4 9 9 C 1.40195 * 120.00304 * 185.22131 * 8 6 5 10 10 C 1.40403 * 125.97229 * 359.97438 * 9 8 6 11 11 C 1.35242 * 107.86923 * 180.02562 * 10 9 8 12 12 N 1.34960 * 107.85994 * 0.02562 * 11 10 9 13 13 C 1.46500 * 125.97724 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47299 * 124.99760 * 13 12 11 15 15 H 1.08002 * 119.99951 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00167 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99970 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00263 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47221 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47378 * 120.00072 * 18 16 14 21 21 H 1.48500 * 109.47555 * 240.00298 * 18 16 14 22 22 N 1.31209 * 125.97821 * 179.69697 * 9 8 6 23 23 C 1.47156 * 118.03432 * 309.45968 * 5 4 2 24 24 C 1.53295 * 108.38168 * 50.54210 * 23 5 4 25 25 C 1.53000 * 109.51080 * 187.77181 * 24 23 5 26 26 C 1.52999 * 109.51741 * 67.61990 * 24 23 5 27 27 O 1.42955 * 109.51303 * 239.89500 * 2 1 3 28 28 H 1.09005 * 109.47254 * 180.10252 * 1 2 3 29 29 H 1.09003 * 109.47442 * 300.10312 * 1 2 3 30 30 H 1.09000 * 109.47386 * 60.11022 * 1 2 3 31 31 H 1.08994 * 109.68223 * 291.97073 * 4 2 1 32 32 H 1.08991 * 109.68381 * 52.53256 * 4 2 1 33 33 H 0.97000 * 119.99889 * 5.23002 * 8 6 5 34 34 H 1.08003 * 126.06590 * 0.02562 * 10 9 8 35 35 H 1.08007 * 126.06857 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.46670 * 245.00188 * 13 12 11 37 37 H 1.08995 * 109.47025 * 4.99961 * 13 12 11 38 38 H 0.96998 * 120.00289 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.67649 * 170.26117 * 23 5 4 40 40 H 1.08991 * 109.68617 * 290.77606 * 23 5 4 41 41 H 1.08999 * 109.47164 * 179.74575 * 25 24 23 42 42 H 1.08997 * 109.47093 * 299.74635 * 25 24 23 43 43 H 1.09004 * 109.47395 * 59.74110 * 25 24 23 44 44 H 1.08998 * 109.46917 * 300.25216 * 26 24 23 45 45 H 1.08998 * 109.46999 * 60.25082 * 26 24 23 46 46 H 1.08996 * 109.47380 * 180.25384 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0430 -0.7250 1.2495 5 7 3.5022 -0.8749 1.1327 6 6 4.3205 -0.5025 2.1368 7 8 5.5147 -0.7172 2.0592 8 7 3.8150 0.1082 3.2267 9 6 4.6760 0.5936 4.2210 10 6 6.0776 0.5114 4.2102 11 6 6.5360 1.0921 5.3424 12 7 5.4694 1.5261 6.0461 13 6 5.5133 2.2143 7.3387 14 6 4.7705 3.5215 7.2373 15 1 4.3112 3.8106 6.3035 16 6 4.6763 4.3480 8.3368 17 7 5.2351 3.9958 9.4740 18 14 3.7550 5.9681 8.2113 19 1 3.2220 6.1292 6.8346 20 1 2.6302 5.9744 9.1809 21 1 4.6797 7.0887 8.5188 22 7 4.3133 1.2087 5.3217 23 6 4.0416 -1.4440 -0.1125 24 6 3.4312 -0.6840 -1.2956 25 6 3.8211 -1.3758 -2.6033 26 6 3.9519 0.7547 -1.3023 27 8 2.0075 -0.6759 -1.1657 28 1 -0.3634 -1.0277 0.0018 29 1 -0.3634 0.5154 0.8891 30 1 -0.3634 0.5121 -0.8910 31 1 1.8040 -0.1399 2.1375 32 1 1.5776 -1.7080 1.3206 33 1 2.8554 0.2117 3.3234 34 1 6.6823 0.0639 3.4353 35 1 7.5718 1.1902 5.6322 36 1 5.0459 1.5888 8.0993 37 1 6.5505 2.4061 7.6131 38 1 5.1685 4.5770 10.2477 39 1 5.1261 -1.3350 -0.1263 40 1 3.7779 -2.4995 -0.1781 41 1 3.3831 -0.8375 -3.4438 42 1 4.9066 -1.3816 -2.7016 43 1 3.4515 -2.4012 -2.5962 44 1 3.6753 1.2455 -0.3692 45 1 5.0374 0.7477 -1.4013 46 1 3.5140 1.2957 -2.1411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173362614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:12 Heat of formation + Delta-G solvation = 20.939427 kcal Electronic energy + Delta-G solvation = -27743.440550 eV Core-core repulsion = 23863.839620 eV Total energy + Delta-G solvation = -3879.600930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.16593 -40.30574 -38.92434 -35.24632 -34.92584 -34.42319 -33.29234 -31.17158 -30.79834 -29.30503 -27.77774 -27.37728 -26.85825 -25.90533 -23.06021 -22.30582 -21.55601 -20.40566 -19.91661 -19.23141 -18.10246 -17.11678 -16.65241 -16.55692 -15.98023 -15.92865 -15.24812 -15.00710 -14.87672 -14.44001 -14.36220 -14.10087 -13.73074 -13.53369 -12.92993 -12.81366 -12.65182 -12.55341 -12.36889 -12.31776 -12.28945 -12.20155 -12.07132 -11.75545 -11.74313 -11.40624 -11.07184 -10.89690 -10.75752 -10.45820 -10.28456 -10.25345 -10.08397 -9.68067 -9.48537 -8.76262 -8.63942 -8.10887 -7.42110 -6.24928 -4.29861 2.21456 2.63090 3.06922 3.21357 3.24270 3.28882 3.31459 3.37171 3.80209 4.03994 4.24857 4.32164 4.45643 4.54681 4.58181 4.69708 4.79606 4.98749 5.10268 5.15434 5.21435 5.29987 5.30130 5.42336 5.45727 5.52281 5.55752 5.58358 5.64378 5.75212 5.79750 5.83655 5.94223 6.04292 6.29379 6.53090 6.58326 6.80307 6.90189 6.95408 7.08045 7.46912 7.68390 7.77057 7.92242 8.06051 8.51255 8.65186 8.80546 9.35778 10.83848 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.002791 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.945606 B =10030.046310 C =10875.005429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 H 0.069 0.931 4 C 0.079 3.921 5 N -0.630 5.630 6 C 0.719 3.281 7 O -0.563 6.563 8 N -0.644 5.644 9 C 0.274 3.726 10 C -0.286 4.286 11 C 0.052 3.948 12 N -0.320 5.320 13 C 0.258 3.742 14 C -0.527 4.527 15 H 0.069 0.931 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.282 1.282 22 N -0.307 5.307 23 C 0.111 3.889 24 C 0.099 3.901 25 C -0.135 4.135 26 C -0.176 4.176 27 O -0.368 6.368 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.405 0.595 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.267 0.733 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 -10.455 -21.657 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.013 3.987 3 H 0.087 0.913 4 C -0.045 4.045 5 N -0.368 5.368 6 C 0.420 3.580 7 O -0.438 6.438 8 N -0.295 5.295 9 C 0.020 3.980 10 C -0.317 4.317 11 C -0.098 4.098 12 N -0.102 5.102 13 C 0.141 3.859 14 C -0.566 4.566 15 H 0.087 0.913 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.735 3.265 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 N -0.138 5.138 23 C -0.013 4.013 24 C 0.059 3.941 25 C -0.193 4.193 26 C -0.233 4.233 27 O -0.287 6.287 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.242 0.758 34 H 0.177 0.823 35 H 0.185 0.815 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.989 -10.140 -20.833 23.931 hybrid contribution -0.209 0.835 0.015 0.861 sum -6.199 -9.305 -20.818 23.630 Atomic orbital electron populations 1.21747 0.92061 1.03289 1.03088 1.22474 0.95460 0.95964 0.84840 0.91273 1.22446 0.80678 1.02053 0.99276 1.47195 1.05764 1.67522 1.16347 1.15462 0.84834 0.78313 0.79375 1.90859 1.13177 1.60144 1.79634 1.41550 1.09252 1.60003 1.18739 1.18791 0.89654 0.99358 0.90160 1.21485 0.92586 1.15247 1.02419 1.22549 0.94521 0.99346 0.93411 1.49058 1.01331 1.41942 1.17859 1.19742 0.99368 0.92055 0.74761 1.21297 1.34827 1.02310 0.98122 0.91265 1.24949 0.95542 0.98813 0.94826 1.69926 1.44065 1.37966 1.01410 0.86280 0.79428 0.82476 0.78355 1.19584 1.20702 1.20759 1.77315 1.09169 1.22153 1.05196 1.22195 1.00893 0.96896 0.81274 1.21922 0.81280 0.95561 0.95374 1.21713 1.01785 1.00944 0.94855 1.22366 1.02243 0.96022 1.02673 1.87989 1.20555 1.77123 1.43078 0.91496 0.90570 0.91341 0.89440 0.90104 0.75824 0.82274 0.81500 0.93743 0.92528 0.92382 0.87754 0.90819 0.91359 0.90621 0.91529 0.91978 0.91092 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.57 37.16 0.36 -0.58 16 2 C 0.07 0.60 3.01 -26.58 -0.08 0.52 16 3 H 0.07 0.63 6.25 -51.93 -0.32 0.31 16 4 C 0.08 0.71 5.92 -3.53 -0.02 0.69 16 5 N -0.63 -7.28 2.54 -178.01 -0.45 -7.74 16 6 C 0.72 11.10 8.28 -86.93 -0.72 10.38 16 7 O -0.56 -10.28 12.99 5.29 0.07 -10.22 16 8 N -0.64 -10.42 5.37 -15.51 -0.08 -10.50 16 9 C 0.27 5.61 8.11 -154.36 -1.25 4.35 16 10 C -0.29 -5.77 9.61 -39.83 -0.38 -6.16 16 11 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 12 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 13 C 0.26 6.58 6.26 -5.20 -0.03 6.54 16 14 C -0.53 -14.66 9.23 -34.44 -0.32 -14.97 16 15 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.90 -25.32 13.29 55.43 0.74 -24.58 16 18 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 N -0.31 -7.12 12.42 31.44 0.39 -6.73 16 23 C 0.11 1.11 5.29 -3.53 -0.02 1.09 16 24 C 0.10 0.87 1.11 -90.47 -0.10 0.77 16 25 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 26 C -0.18 -1.62 8.09 37.16 0.30 -1.32 16 27 O -0.37 -3.51 9.87 -35.23 -0.35 -3.86 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.71 5.66 -51.93 -0.29 0.42 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.40 5.45 6.34 -40.82 -0.26 5.20 16 34 H 0.16 3.15 5.93 -52.48 -0.31 2.84 16 35 H 0.17 2.75 8.06 -52.48 -0.42 2.32 16 36 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.10 1.15 7.11 -51.93 -0.37 0.78 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.68 6.11 -51.93 -0.32 0.36 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -32.83 370.43 -8.50 -41.33 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.91 Total: 4.96 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -2.23 Total: 3.18 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.36 Total: -57.26 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.28 Total: -14.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.83 -8.50 -41.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173362614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.271 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds