Wall clock time and date at job start Tue Mar 31 2020 14:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.50977 * 2 1 4 4 C 1.53300 * 109.54982 * 120.12396 * 2 1 3 5 5 N 1.47155 * 108.37973 * 172.25369 * 4 2 1 6 6 C 1.34772 * 120.98307 * 129.48956 * 5 4 2 7 7 O 1.21591 * 119.99967 * 175.01174 * 6 5 4 8 8 N 1.34773 * 119.99956 * 354.99960 * 6 5 4 9 9 C 1.40195 * 120.00304 * 185.22131 * 8 6 5 10 10 C 1.40403 * 125.97229 * 359.97438 * 9 8 6 11 11 C 1.35242 * 107.86923 * 180.02562 * 10 9 8 12 12 N 1.34960 * 107.85994 * 0.02562 * 11 10 9 13 13 C 1.46500 * 125.97724 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47299 * 124.99760 * 13 12 11 15 15 H 1.08002 * 119.99951 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00167 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99970 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00263 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47221 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47378 * 120.00072 * 18 16 14 21 21 H 1.48500 * 109.47555 * 240.00298 * 18 16 14 22 22 N 1.31209 * 125.97821 * 179.69697 * 9 8 6 23 23 C 1.47156 * 118.03432 * 309.45968 * 5 4 2 24 24 C 1.53295 * 108.38168 * 50.54210 * 23 5 4 25 25 C 1.53000 * 109.51080 * 187.77181 * 24 23 5 26 26 C 1.52999 * 109.51741 * 67.61990 * 24 23 5 27 27 O 1.42955 * 109.51303 * 239.89500 * 2 1 3 28 28 H 1.09005 * 109.47254 * 180.10252 * 1 2 3 29 29 H 1.09003 * 109.47442 * 300.10312 * 1 2 3 30 30 H 1.09000 * 109.47386 * 60.11022 * 1 2 3 31 31 H 1.08994 * 109.68223 * 291.97073 * 4 2 1 32 32 H 1.08991 * 109.68381 * 52.53256 * 4 2 1 33 33 H 0.97000 * 119.99889 * 5.23002 * 8 6 5 34 34 H 1.08003 * 126.06590 * 0.02562 * 10 9 8 35 35 H 1.08007 * 126.06857 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.46670 * 245.00188 * 13 12 11 37 37 H 1.08995 * 109.47025 * 4.99961 * 13 12 11 38 38 H 0.96998 * 120.00289 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.67649 * 170.26117 * 23 5 4 40 40 H 1.08991 * 109.68617 * 290.77606 * 23 5 4 41 41 H 1.08999 * 109.47164 * 179.74575 * 25 24 23 42 42 H 1.08997 * 109.47093 * 299.74635 * 25 24 23 43 43 H 1.09004 * 109.47395 * 59.74110 * 25 24 23 44 44 H 1.08998 * 109.46917 * 300.25216 * 26 24 23 45 45 H 1.08998 * 109.46999 * 60.25082 * 26 24 23 46 46 H 1.08996 * 109.47380 * 180.25384 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0430 -0.7250 1.2495 5 7 3.5022 -0.8749 1.1327 6 6 4.3205 -0.5025 2.1368 7 8 5.5147 -0.7172 2.0592 8 7 3.8150 0.1082 3.2267 9 6 4.6760 0.5936 4.2210 10 6 6.0776 0.5114 4.2102 11 6 6.5360 1.0921 5.3424 12 7 5.4694 1.5261 6.0461 13 6 5.5133 2.2143 7.3387 14 6 4.7705 3.5215 7.2373 15 1 4.3112 3.8106 6.3035 16 6 4.6763 4.3480 8.3368 17 7 5.2351 3.9958 9.4740 18 14 3.7550 5.9681 8.2113 19 1 3.2220 6.1292 6.8346 20 1 2.6302 5.9744 9.1809 21 1 4.6797 7.0887 8.5188 22 7 4.3133 1.2087 5.3217 23 6 4.0416 -1.4440 -0.1125 24 6 3.4312 -0.6840 -1.2956 25 6 3.8211 -1.3758 -2.6033 26 6 3.9519 0.7547 -1.3023 27 8 2.0075 -0.6759 -1.1657 28 1 -0.3634 -1.0277 0.0018 29 1 -0.3634 0.5154 0.8891 30 1 -0.3634 0.5121 -0.8910 31 1 1.8040 -0.1399 2.1375 32 1 1.5776 -1.7080 1.3206 33 1 2.8554 0.2117 3.3234 34 1 6.6823 0.0639 3.4353 35 1 7.5718 1.1902 5.6322 36 1 5.0459 1.5888 8.0993 37 1 6.5505 2.4061 7.6131 38 1 5.1685 4.5770 10.2477 39 1 5.1261 -1.3350 -0.1263 40 1 3.7779 -2.4995 -0.1781 41 1 3.3831 -0.8375 -3.4438 42 1 4.9066 -1.3816 -2.7016 43 1 3.4515 -2.4012 -2.5962 44 1 3.6753 1.2455 -0.3692 45 1 5.0374 0.7477 -1.4013 46 1 3.5140 1.2957 -2.1411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173362614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:11 Heat of formation + Delta-G solvation = 0.975732 kcal Electronic energy + Delta-G solvation = -27744.306240 eV Core-core repulsion = 23863.839620 eV Total energy + Delta-G solvation = -3880.466621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40497 -41.61753 -40.02464 -36.42210 -36.05838 -35.42461 -35.09073 -32.73433 -31.72746 -30.96046 -28.76847 -28.43289 -27.94688 -27.04081 -24.91624 -22.98474 -22.90221 -21.96238 -21.03416 -20.29627 -19.27511 -18.69683 -18.23870 -17.73497 -17.23169 -17.00359 -16.59768 -16.05058 -16.03022 -15.81758 -15.65611 -15.26602 -14.97595 -14.52643 -14.27210 -14.21258 -13.87338 -13.69291 -13.49438 -13.24345 -13.15079 -12.94032 -12.93150 -12.84694 -12.83847 -12.72374 -12.43320 -12.31170 -12.11281 -12.05277 -11.69611 -11.53997 -11.39888 -11.09116 -11.03682 -10.72574 -9.83122 -9.63311 -9.06135 -8.33140 -6.47186 0.99086 1.05584 1.37163 1.38549 1.51501 1.63983 1.94308 2.32684 2.34729 2.58973 2.71732 2.98616 3.52605 3.71280 3.82041 3.87548 3.95602 4.01096 4.10789 4.24604 4.34830 4.40312 4.58240 4.62551 4.71296 4.74239 4.75683 4.79744 4.87747 4.92385 4.93389 4.97788 5.00483 5.03163 5.08472 5.17626 5.25171 5.33650 5.40090 5.55657 5.63635 5.82399 5.92590 6.20762 6.27851 6.51484 6.65942 7.06425 7.22851 7.28038 8.74695 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.002791 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.945606 B =10030.046310 C =10875.005429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.071 3.929 3 H 0.060 0.940 4 C 0.074 3.926 5 N -0.620 5.620 6 C 0.717 3.283 7 O -0.594 6.594 8 N -0.638 5.638 9 C 0.283 3.717 10 C -0.292 4.292 11 C 0.058 3.942 12 N -0.344 5.344 13 C 0.272 3.728 14 C -0.546 4.546 15 H 0.052 0.948 16 C 0.018 3.982 17 N -0.921 5.921 18 Si 0.972 3.028 19 H -0.274 1.274 20 H -0.273 1.273 21 H -0.270 1.270 22 N -0.346 5.346 23 C 0.107 3.893 24 C 0.101 3.899 25 C -0.132 4.132 26 C -0.173 4.173 27 O -0.374 6.374 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.416 0.584 34 H 0.166 0.834 35 H 0.202 0.798 36 H 0.022 0.978 37 H 0.059 0.941 38 H 0.273 0.727 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.682 -10.505 -23.129 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.078 0.922 4 C -0.048 4.048 5 N -0.357 5.357 6 C 0.418 3.582 7 O -0.472 6.472 8 N -0.291 5.291 9 C 0.027 3.973 10 C -0.323 4.323 11 C -0.090 4.090 12 N -0.126 5.126 13 C 0.154 3.846 14 C -0.584 4.584 15 H 0.070 0.930 16 C -0.182 4.182 17 N -0.560 5.560 18 Si 0.796 3.204 19 H -0.199 1.199 20 H -0.198 1.198 21 H -0.195 1.195 22 N -0.177 5.177 23 C -0.016 4.016 24 C 0.061 3.939 25 C -0.190 4.190 26 C -0.231 4.231 27 O -0.294 6.294 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.256 0.744 34 H 0.183 0.817 35 H 0.219 0.781 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.089 0.911 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.892 -10.215 -22.349 25.521 hybrid contribution 0.053 0.760 0.360 0.843 sum -6.839 -9.455 -21.989 24.894 Atomic orbital electron populations 1.21748 0.90329 1.03910 1.03755 1.22540 0.96735 0.95234 0.84238 0.92226 1.22696 0.78871 1.03270 0.99995 1.47258 1.06663 1.66188 1.15637 1.15606 0.84844 0.78138 0.79637 1.90825 1.14672 1.61380 1.80274 1.41549 1.09508 1.59860 1.18198 1.19076 0.90537 0.97741 0.89911 1.21653 0.92681 1.15420 1.02593 1.23150 0.95429 0.97720 0.92732 1.48833 1.02346 1.43502 1.17915 1.19348 0.98786 0.90968 0.75529 1.21424 1.35587 1.03657 0.97752 0.92953 1.25741 0.96120 1.02032 0.94333 1.70000 1.44719 1.39263 1.01992 0.85294 0.78435 0.78497 0.78146 1.19876 1.19832 1.19543 1.77237 1.09814 1.24141 1.06504 1.22385 1.00460 0.97822 0.80916 1.21979 0.80984 0.95153 0.95792 1.21726 1.02601 1.01054 0.93570 1.22348 1.02322 0.96451 1.01942 1.87998 1.20775 1.77156 1.43441 0.90874 0.89404 0.91220 0.88783 0.88448 0.74422 0.81681 0.78120 0.96042 0.92309 0.91839 0.88828 0.89440 0.90883 0.89527 0.90870 0.93926 0.91104 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.57 71.98 0.69 -0.83 16 2 C 0.07 1.09 3.01 30.69 0.09 1.18 16 3 H 0.06 1.04 6.25 -2.39 -0.01 1.02 16 4 C 0.07 1.20 5.92 86.35 0.51 1.71 16 5 N -0.62 -13.68 2.54 -835.35 -2.12 -15.80 16 6 C 0.72 21.73 8.28 179.06 1.48 23.21 16 7 O -0.59 -21.56 12.99 -4.00 -0.05 -21.61 16 8 N -0.64 -20.41 5.37 -321.24 -1.72 -22.13 16 9 C 0.28 11.58 8.11 133.31 1.08 12.66 16 10 C -0.29 -11.72 9.61 22.11 0.21 -11.51 16 11 C 0.06 2.33 11.44 83.52 0.96 3.28 16 12 N -0.34 -16.31 3.67 -351.85 -1.29 -17.60 16 13 C 0.27 14.19 6.26 85.63 0.54 14.72 16 14 C -0.55 -30.84 9.23 25.60 0.24 -30.60 16 15 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 16 C 0.02 0.99 5.46 84.65 0.46 1.46 16 17 N -0.92 -52.16 13.29 21.45 0.28 -51.87 16 18 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 N -0.35 -16.27 12.42 -54.43 -0.68 -16.94 16 23 C 0.11 2.01 5.29 86.35 0.46 2.46 16 24 C 0.10 1.62 1.11 -10.69 -0.01 1.61 16 25 C -0.13 -1.48 8.85 71.98 0.64 -0.84 16 26 C -0.17 -3.05 8.09 71.98 0.58 -2.47 16 27 O -0.37 -6.43 9.87 -148.98 -1.47 -7.90 16 28 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 1.39 5.66 -2.39 -0.01 1.38 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.42 10.98 6.34 -92.71 -0.59 10.40 16 34 H 0.17 6.47 5.93 -2.91 -0.02 6.45 16 35 H 0.20 6.33 8.06 -2.91 -0.02 6.31 16 36 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 38 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 39 H 0.09 2.00 7.11 -2.39 -0.02 1.98 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.04 0.91 6.11 -2.39 -0.01 0.90 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -70.41 370.43 3.31 -67.10 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.41 Total: 25.18 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 7.92 Total: 16.05 kcal Atomic # 7 Polarization: -118.82 SS G_CDS: -5.52 Total: -124.34 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.52 Total: -29.51 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.41 3.31 -67.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173362614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.073 kcal (2) G-P(sol) polarization free energy of solvation -70.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds