Wall clock time and date at job start Tue Mar 31 2020 12:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46794 * 2 1 4 4 H 1.08997 * 109.50744 * 304.89896 * 3 2 1 5 5 C 1.52873 * 109.58245 * 184.88101 * 3 2 1 6 6 N 1.47147 * 108.60828 * 187.92487 * 5 3 2 7 7 C 1.34786 * 120.98222 * 230.50084 * 6 5 3 8 8 O 1.21589 * 119.99849 * 184.69513 * 7 6 5 9 9 N 1.34782 * 119.99636 * 4.69947 * 7 6 5 10 10 C 1.40192 * 119.99555 * 174.77923 * 9 7 6 11 11 C 1.40400 * 125.97419 * 0.02562 * 10 9 7 12 12 C 1.35245 * 107.86588 * 179.97438 * 11 10 9 13 13 N 1.34964 * 107.86067 * 359.97438 * 12 11 10 14 14 C 1.46503 * 125.97762 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47009 * 124.97486 * 14 13 12 16 16 H 1.08000 * 119.99633 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99932 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00236 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99767 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47079 * 90.00028 * 19 17 15 21 21 H 1.48504 * 109.47022 * 209.99654 * 19 17 15 22 22 H 1.48497 * 109.47111 * 329.99753 * 19 17 15 23 23 N 1.31213 * 125.97064 * 180.02562 * 10 9 7 24 24 C 1.47150 * 118.03980 * 50.22617 * 6 5 3 25 25 C 1.53304 * 108.37952 * 309.71908 * 24 6 5 26 26 H 1.08996 * 109.50886 * 292.37305 * 25 24 6 27 27 C 1.52998 * 109.50784 * 172.22428 * 25 24 6 28 28 O 1.42958 * 109.51021 * 64.99680 * 3 2 1 29 29 H 1.08999 * 109.47520 * 60.00244 * 1 2 3 30 30 H 1.09010 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47812 * 299.99694 * 1 2 3 32 32 H 1.08999 * 109.47368 * 240.00601 * 2 1 3 33 33 H 1.08999 * 109.47520 * 119.99756 * 2 1 3 34 34 H 1.09000 * 109.62069 * 68.09891 * 5 3 2 35 35 H 1.09003 * 109.52701 * 307.68681 * 5 3 2 36 36 H 0.96997 * 120.00081 * 354.77177 * 9 7 6 37 37 H 1.07996 * 126.06926 * 0.02562 * 11 10 9 38 38 H 1.07999 * 126.06962 * 180.02562 * 12 11 10 39 39 H 1.08994 * 109.47359 * 244.98077 * 14 13 12 40 40 H 1.08999 * 109.47047 * 4.97716 * 14 13 12 41 41 H 0.96993 * 120.00010 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.68221 * 69.43406 * 24 6 5 43 43 H 1.08998 * 109.68556 * 189.99883 * 24 6 5 44 44 H 1.09002 * 109.47532 * 60.00185 * 27 25 24 45 45 H 1.09008 * 109.46723 * 179.97438 * 27 25 24 46 46 H 1.08999 * 109.47240 * 299.99605 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6070 1.9817 -0.8426 5 6 3.5637 1.4474 -0.1226 6 7 4.0460 2.8241 0.0708 7 6 4.8944 3.3921 -0.8092 8 8 5.3486 4.4981 -0.5885 9 7 5.2392 2.7339 -1.9337 10 6 6.0332 3.3665 -2.9006 11 6 6.5366 4.6751 -2.8269 12 6 7.2516 4.9085 -3.9508 13 7 7.2060 3.7932 -4.7096 14 6 7.8479 3.6129 -6.0140 15 6 8.7339 2.3944 -5.9737 16 1 8.8107 1.8124 -5.0672 17 6 9.4464 2.0228 -7.0940 18 7 9.3524 2.7312 -8.1981 19 14 10.5440 0.5121 -7.0442 20 1 9.7608 -0.6824 -7.4506 21 1 11.6840 0.6975 -7.9777 22 1 11.0597 0.3202 -5.6650 23 7 6.4357 2.8391 -4.0326 24 6 3.5699 3.5646 1.2499 25 6 2.0415 3.4585 1.3027 26 1 1.6095 4.0055 0.4647 27 6 1.5333 4.0518 2.6182 28 8 1.6621 2.0826 1.2212 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3635 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8525 1.0928 -1.1120 35 1 3.9927 0.7977 0.6404 36 1 4.9380 1.8226 -2.0740 37 1 6.3811 5.3714 -2.0161 38 1 7.7682 5.8244 -4.1971 39 1 7.0838 3.4813 -6.7800 40 1 8.4490 4.4916 -6.2477 41 1 9.8534 2.4695 -8.9864 42 1 3.9993 3.1317 2.1533 43 1 3.8626 4.6115 1.1688 44 1 1.8267 5.0997 2.6816 45 1 0.4464 3.9764 2.6548 46 1 1.9644 3.5024 3.4551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173367432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:49 Heat of formation + Delta-G solvation = 14.308119 kcal Electronic energy + Delta-G solvation = -27279.191336 eV Core-core repulsion = 23399.302852 eV Total energy + Delta-G solvation = -3879.888485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.05143 -40.20245 -38.83568 -35.25946 -35.00618 -34.57139 -33.30771 -31.85764 -30.85886 -29.30429 -28.80181 -27.15227 -26.18110 -24.26692 -23.11191 -22.09046 -21.57502 -20.92475 -20.26985 -19.28359 -18.09658 -17.20681 -16.71135 -16.56754 -16.05249 -15.90066 -15.56009 -15.01800 -14.76492 -14.50848 -14.31230 -14.17377 -14.00712 -13.60783 -13.35760 -12.87084 -12.70261 -12.62685 -12.47032 -12.26966 -12.22901 -12.09072 -11.78975 -11.68681 -11.37188 -11.29744 -11.05431 -10.91359 -10.85146 -10.47079 -10.33984 -10.25735 -10.09479 -9.70546 -9.49332 -8.80493 -8.63253 -8.11277 -7.42518 -6.24435 -4.29464 2.19744 2.62522 3.05902 3.23321 3.23478 3.29183 3.30386 3.36009 3.79627 4.03032 4.21310 4.32568 4.47334 4.54959 4.63405 4.73493 4.84790 4.89397 4.95962 5.10661 5.11970 5.21806 5.34515 5.39289 5.42992 5.48796 5.54666 5.61299 5.63132 5.76025 5.80183 5.81321 5.97438 6.01110 6.28534 6.52788 6.57179 6.79739 6.84688 6.94937 7.07685 7.46333 7.68438 7.76719 7.92067 8.06042 8.49948 8.64884 8.80517 9.36155 10.84277 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.002601 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.560766 B =10764.225379 C =11768.021125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.079 3.921 4 H 0.065 0.935 5 C 0.079 3.921 6 N -0.632 5.632 7 C 0.719 3.281 8 O -0.563 6.563 9 N -0.643 5.643 10 C 0.274 3.726 11 C -0.286 4.286 12 C 0.052 3.948 13 N -0.320 5.320 14 C 0.259 3.741 15 C -0.528 4.528 16 H 0.069 0.931 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 N -0.307 5.307 24 C 0.103 3.897 25 C 0.073 3.927 26 H 0.064 0.936 27 C -0.142 4.142 28 O -0.371 6.371 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.405 0.595 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.267 0.733 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.003 -1.048 19.073 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.021 3.979 4 H 0.083 0.917 5 C -0.045 4.045 6 N -0.371 5.371 7 C 0.420 3.580 8 O -0.438 6.438 9 N -0.295 5.295 10 C 0.020 3.980 11 C -0.317 4.317 12 C -0.098 4.098 13 N -0.102 5.102 14 C 0.141 3.859 15 C -0.566 4.566 16 H 0.087 0.913 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 N -0.138 5.138 24 C -0.020 4.020 25 C 0.015 3.985 26 H 0.082 0.918 27 C -0.199 4.199 28 O -0.290 6.290 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.242 0.758 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.647 -1.348 18.308 24.782 hybrid contribution 0.715 -0.533 -0.004 0.892 sum -15.931 -1.881 18.305 24.339 Atomic orbital electron populations 1.21694 0.94838 1.01714 1.02361 1.21529 0.97159 0.93423 1.03232 1.22432 0.92721 0.94936 0.87843 0.91718 1.22347 0.95495 0.83662 1.03013 1.47226 1.48965 1.14855 1.26014 1.15476 0.79424 0.83851 0.79259 1.90861 1.57091 1.19540 1.76308 1.41545 1.53135 1.17305 1.17518 1.18792 0.96590 0.92463 0.90137 1.21485 1.10472 0.97443 1.02345 1.22552 1.01285 0.93330 0.92645 1.49061 1.36419 1.07342 1.17361 1.19738 0.92513 0.99276 0.74356 1.21259 1.25826 1.10643 0.98899 0.91320 1.24945 0.96803 0.97441 0.94905 1.69917 1.42079 1.39249 1.02141 0.86327 0.79738 0.82349 0.78083 1.20351 1.20976 1.19722 1.77316 1.15526 1.15012 1.05984 1.22232 0.93783 0.99102 0.86854 1.22521 0.93476 0.83138 0.99406 0.91845 1.21714 1.02102 1.00708 0.95426 1.87951 1.79664 1.23564 1.37847 0.92838 0.92564 0.91912 0.90088 0.90715 0.89393 0.90074 0.75800 0.82273 0.81478 0.93755 0.92513 0.92331 0.90743 0.87753 0.90599 0.91437 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.81 37.16 0.36 -0.61 16 2 C -0.12 -0.76 5.64 -26.73 -0.15 -0.91 16 3 C 0.08 0.65 2.76 -26.79 -0.07 0.58 16 4 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 5 C 0.08 0.70 5.89 -3.75 -0.02 0.67 16 6 N -0.63 -7.34 3.03 -178.26 -0.54 -7.88 16 7 C 0.72 11.19 8.28 -86.91 -0.72 10.47 16 8 O -0.56 -10.38 12.99 5.29 0.07 -10.31 16 9 N -0.64 -10.46 5.37 -15.50 -0.08 -10.54 16 10 C 0.27 5.62 8.11 -154.36 -1.25 4.37 16 11 C -0.29 -5.79 9.61 -39.83 -0.38 -6.18 16 12 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 13 N -0.32 -7.50 3.67 -62.56 -0.23 -7.73 16 14 C 0.26 6.59 6.26 -5.19 -0.03 6.56 16 15 C -0.53 -14.72 9.24 -34.44 -0.32 -15.04 16 16 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.90 -25.35 13.29 55.43 0.74 -24.61 16 19 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 N -0.31 -7.13 12.42 31.44 0.39 -6.74 16 24 C 0.10 1.02 5.91 -3.53 -0.02 1.00 16 25 C 0.07 0.62 3.40 -26.57 -0.09 0.53 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 C -0.14 -0.88 9.57 37.16 0.36 -0.52 16 28 O -0.37 -3.38 9.57 -35.23 -0.34 -3.71 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.06 0.46 7.82 -51.93 -0.41 0.05 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.71 5.67 -51.93 -0.29 0.42 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 5.47 6.34 -40.82 -0.26 5.21 16 37 H 0.16 3.16 5.93 -52.49 -0.31 2.85 16 38 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 39 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 41 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.10 1.12 7.12 -51.93 -0.37 0.75 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -32.93 375.37 -9.09 -42.02 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.10 Total: 4.12 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.64 Total: 3.37 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.28 Total: -57.50 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.27 Total: -14.02 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.93 -9.09 -42.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173367432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.327 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds