Wall clock time and date at job start Tue Mar 31 2020 12:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46794 * 2 1 4 4 H 1.08997 * 109.50744 * 304.89896 * 3 2 1 5 5 C 1.52873 * 109.58245 * 184.88101 * 3 2 1 6 6 N 1.47147 * 108.60828 * 187.92487 * 5 3 2 7 7 C 1.34786 * 120.98222 * 230.50084 * 6 5 3 8 8 O 1.21589 * 119.99849 * 184.69513 * 7 6 5 9 9 N 1.34782 * 119.99636 * 4.69947 * 7 6 5 10 10 C 1.40192 * 119.99555 * 174.77923 * 9 7 6 11 11 C 1.40400 * 125.97419 * 0.02562 * 10 9 7 12 12 C 1.35245 * 107.86588 * 179.97438 * 11 10 9 13 13 N 1.34964 * 107.86067 * 359.97438 * 12 11 10 14 14 C 1.46503 * 125.97762 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47009 * 124.97486 * 14 13 12 16 16 H 1.08000 * 119.99633 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99932 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00236 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99767 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47079 * 90.00028 * 19 17 15 21 21 H 1.48504 * 109.47022 * 209.99654 * 19 17 15 22 22 H 1.48497 * 109.47111 * 329.99753 * 19 17 15 23 23 N 1.31213 * 125.97064 * 180.02562 * 10 9 7 24 24 C 1.47150 * 118.03980 * 50.22617 * 6 5 3 25 25 C 1.53304 * 108.37952 * 309.71908 * 24 6 5 26 26 H 1.08996 * 109.50886 * 292.37305 * 25 24 6 27 27 C 1.52998 * 109.50784 * 172.22428 * 25 24 6 28 28 O 1.42958 * 109.51021 * 64.99680 * 3 2 1 29 29 H 1.08999 * 109.47520 * 60.00244 * 1 2 3 30 30 H 1.09010 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47812 * 299.99694 * 1 2 3 32 32 H 1.08999 * 109.47368 * 240.00601 * 2 1 3 33 33 H 1.08999 * 109.47520 * 119.99756 * 2 1 3 34 34 H 1.09000 * 109.62069 * 68.09891 * 5 3 2 35 35 H 1.09003 * 109.52701 * 307.68681 * 5 3 2 36 36 H 0.96997 * 120.00081 * 354.77177 * 9 7 6 37 37 H 1.07996 * 126.06926 * 0.02562 * 11 10 9 38 38 H 1.07999 * 126.06962 * 180.02562 * 12 11 10 39 39 H 1.08994 * 109.47359 * 244.98077 * 14 13 12 40 40 H 1.08999 * 109.47047 * 4.97716 * 14 13 12 41 41 H 0.96993 * 120.00010 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.68221 * 69.43406 * 24 6 5 43 43 H 1.08998 * 109.68556 * 189.99883 * 24 6 5 44 44 H 1.09002 * 109.47532 * 60.00185 * 27 25 24 45 45 H 1.09008 * 109.46723 * 179.97438 * 27 25 24 46 46 H 1.08999 * 109.47240 * 299.99605 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6070 1.9817 -0.8426 5 6 3.5637 1.4474 -0.1226 6 7 4.0460 2.8241 0.0708 7 6 4.8944 3.3921 -0.8092 8 8 5.3486 4.4981 -0.5885 9 7 5.2392 2.7339 -1.9337 10 6 6.0332 3.3665 -2.9006 11 6 6.5366 4.6751 -2.8269 12 6 7.2516 4.9085 -3.9508 13 7 7.2060 3.7932 -4.7096 14 6 7.8479 3.6129 -6.0140 15 6 8.7339 2.3944 -5.9737 16 1 8.8107 1.8124 -5.0672 17 6 9.4464 2.0228 -7.0940 18 7 9.3524 2.7312 -8.1981 19 14 10.5440 0.5121 -7.0442 20 1 9.7608 -0.6824 -7.4506 21 1 11.6840 0.6975 -7.9777 22 1 11.0597 0.3202 -5.6650 23 7 6.4357 2.8391 -4.0326 24 6 3.5699 3.5646 1.2499 25 6 2.0415 3.4585 1.3027 26 1 1.6095 4.0055 0.4647 27 6 1.5333 4.0518 2.6182 28 8 1.6621 2.0826 1.2212 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3635 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8525 1.0928 -1.1120 35 1 3.9927 0.7977 0.6404 36 1 4.9380 1.8226 -2.0740 37 1 6.3811 5.3714 -2.0161 38 1 7.7682 5.8244 -4.1971 39 1 7.0838 3.4813 -6.7800 40 1 8.4490 4.4916 -6.2477 41 1 9.8534 2.4695 -8.9864 42 1 3.9993 3.1317 2.1533 43 1 3.8626 4.6115 1.1688 44 1 1.8267 5.0997 2.6816 45 1 0.4464 3.9764 2.6548 46 1 1.9644 3.5024 3.4551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173367432.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:48 Heat of formation + Delta-G solvation = -5.679740 kcal Electronic energy + Delta-G solvation = -27280.058075 eV Core-core repulsion = 23399.302852 eV Total energy + Delta-G solvation = -3880.755224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.37382 -41.48497 -39.86879 -36.43312 -36.02531 -35.59054 -35.13428 -32.83505 -32.31023 -30.95918 -29.52967 -28.72865 -27.38473 -25.11937 -24.80718 -23.15260 -22.39685 -22.01841 -21.69519 -20.59375 -19.25190 -18.69322 -18.22074 -17.80469 -17.31168 -17.01936 -16.63179 -16.36787 -16.04428 -15.66487 -15.58509 -15.37160 -14.87041 -14.57221 -14.51632 -14.21578 -14.10967 -13.81622 -13.66143 -13.35080 -13.12412 -13.01398 -12.90092 -12.78813 -12.73834 -12.31431 -12.28901 -12.09359 -11.95993 -11.86366 -11.70800 -11.56777 -11.41657 -11.16507 -11.06800 -10.72241 -9.85013 -9.66165 -9.06993 -8.32955 -6.47060 0.96312 1.06801 1.38295 1.38819 1.50271 1.62469 1.93420 2.31510 2.34697 2.59756 2.70651 2.98765 3.51619 3.77553 3.82196 3.95026 3.96993 4.04895 4.18860 4.24823 4.30514 4.38568 4.47121 4.57444 4.68689 4.73227 4.79156 4.86802 4.87916 4.92411 4.95213 4.99876 5.02013 5.06903 5.14279 5.24670 5.28880 5.37777 5.45790 5.55140 5.62223 5.82275 5.91918 6.17319 6.27598 6.50185 6.65596 7.05702 7.22889 7.26273 8.74638 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.002601 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.560766 B =10764.225379 C =11768.021125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.081 3.919 4 H 0.057 0.943 5 C 0.074 3.926 6 N -0.624 5.624 7 C 0.716 3.284 8 O -0.594 6.594 9 N -0.637 5.637 10 C 0.282 3.718 11 C -0.293 4.293 12 C 0.058 3.942 13 N -0.344 5.344 14 C 0.273 3.727 15 C -0.547 4.547 16 H 0.052 0.948 17 C 0.019 3.981 18 N -0.921 5.921 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.272 1.272 22 H -0.273 1.273 23 N -0.345 5.345 24 C 0.100 3.900 25 C 0.076 3.924 26 H 0.055 0.945 27 C -0.137 4.137 28 O -0.376 6.376 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.417 0.583 37 H 0.166 0.834 38 H 0.202 0.798 39 H 0.022 0.978 40 H 0.059 0.941 41 H 0.273 0.727 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.316 -1.987 20.382 26.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C 0.022 3.978 4 H 0.075 0.925 5 C -0.049 4.049 6 N -0.361 5.361 7 C 0.417 3.583 8 O -0.472 6.472 9 N -0.291 5.291 10 C 0.027 3.973 11 C -0.324 4.324 12 C -0.090 4.090 13 N -0.126 5.126 14 C 0.154 3.846 15 C -0.585 4.585 16 H 0.070 0.930 17 C -0.182 4.182 18 N -0.559 5.559 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.198 1.198 23 N -0.177 5.177 24 C -0.022 4.022 25 C 0.018 3.982 26 H 0.073 0.927 27 C -0.195 4.195 28 O -0.296 6.296 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.256 0.744 37 H 0.183 0.817 38 H 0.219 0.781 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.009 -2.310 19.657 26.097 hybrid contribution 0.710 -0.212 -0.299 0.799 sum -16.299 -2.522 19.358 25.431 Atomic orbital electron populations 1.21677 0.94834 1.02200 1.01771 1.21550 0.97104 0.92251 1.04121 1.22479 0.92047 0.95886 0.87371 0.92541 1.22593 0.96077 0.82176 1.04018 1.47314 1.47501 1.15916 1.25353 1.15633 0.79763 0.83549 0.79363 1.90827 1.58435 1.20941 1.77002 1.41541 1.52605 1.17880 1.17030 1.19076 0.95709 0.92656 0.89865 1.21654 1.10620 0.97581 1.02522 1.23156 1.00494 0.93501 0.91870 1.48838 1.37805 1.08549 1.17402 1.19347 0.91525 0.98570 0.75156 1.21396 1.26904 1.11623 0.98609 0.92985 1.25734 0.97887 1.00173 0.94388 1.69992 1.42703 1.40567 1.02664 0.85350 0.78162 0.78817 0.78104 1.19730 1.19699 1.19779 1.77237 1.17066 1.16042 1.07307 1.22416 0.94858 0.98507 0.86418 1.22546 0.92278 0.83010 1.00388 0.92707 1.21713 1.02310 1.01265 0.94166 1.87962 1.79666 1.23785 1.38166 0.93147 0.91557 0.92776 0.88827 0.90181 0.88674 0.88551 0.74363 0.81687 0.78091 0.95996 0.92292 0.91828 0.89450 0.88764 0.89487 0.91003 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.81 71.98 0.71 -0.99 16 2 C -0.11 -1.25 5.64 30.60 0.17 -1.08 16 3 C 0.08 1.20 2.76 30.56 0.08 1.28 16 4 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 5 C 0.07 1.18 5.89 86.21 0.51 1.69 16 6 N -0.62 -13.75 3.03 -836.15 -2.53 -16.28 16 7 C 0.72 21.80 8.28 179.05 1.48 23.28 16 8 O -0.59 -21.72 12.99 -4.00 -0.05 -21.78 16 9 N -0.64 -20.38 5.37 -321.22 -1.72 -22.10 16 10 C 0.28 11.56 8.11 133.31 1.08 12.64 16 11 C -0.29 -11.75 9.61 22.11 0.21 -11.53 16 12 C 0.06 2.33 11.44 83.52 0.96 3.29 16 13 N -0.34 -16.30 3.67 -351.84 -1.29 -17.59 16 14 C 0.27 14.19 6.26 85.63 0.54 14.73 16 15 C -0.55 -30.94 9.24 25.60 0.24 -30.70 16 16 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 17 C 0.02 1.02 5.46 84.65 0.46 1.49 16 18 N -0.92 -52.14 13.29 21.45 0.28 -51.86 16 19 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 N -0.35 -16.22 12.42 -54.44 -0.68 -16.90 16 24 C 0.10 1.85 5.91 86.36 0.51 2.36 16 25 C 0.08 1.18 3.40 30.70 0.10 1.29 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 C -0.14 -1.46 9.57 71.98 0.69 -0.77 16 28 O -0.38 -6.23 9.57 -148.98 -1.43 -7.66 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.05 0.71 7.82 -2.39 -0.02 0.70 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 1.38 5.67 -2.39 -0.01 1.36 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.42 10.94 6.34 -92.71 -0.59 10.35 16 37 H 0.17 6.48 5.93 -2.91 -0.02 6.46 16 38 H 0.20 6.34 8.06 -2.91 -0.02 6.31 16 39 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 41 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.09 1.96 7.12 -2.39 -0.02 1.94 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -70.44 375.37 2.75 -67.69 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.40 Total: 23.89 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 7.74 Total: 16.98 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -5.93 Total: -124.73 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.48 Total: -29.43 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.44 2.75 -67.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173367432.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.011 kcal (2) G-P(sol) polarization free energy of solvation -70.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds