Wall clock time and date at job start Tue Mar 31 2020 12:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46995 * 2 1 4 4 H 1.09000 * 109.51440 * 54.90001 * 3 2 1 5 5 C 1.53296 * 109.51203 * 175.00006 * 3 2 1 6 6 N 1.47152 * 108.38692 * 172.22597 * 5 3 2 7 7 C 1.34775 * 120.98757 * 129.44102 * 6 5 3 8 8 O 1.21585 * 120.00262 * 185.21337 * 7 6 5 9 9 N 1.34779 * 119.99828 * 5.21504 * 7 6 5 10 10 C 1.40188 * 120.00100 * 174.87823 * 9 7 6 11 11 C 1.40404 * 125.97576 * 359.97438 * 10 9 7 12 12 C 1.35241 * 107.87150 * 180.02562 * 11 10 9 13 13 N 1.34967 * 107.85914 * 0.02562 * 12 11 10 14 14 C 1.46498 * 125.98070 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47255 * 124.99798 * 14 13 12 16 16 H 1.08003 * 120.00423 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00134 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99789 * 0.26915 * 17 15 14 19 19 Si 1.86800 * 120.00323 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47376 * 59.99284 * 19 17 15 21 21 H 1.48497 * 109.47014 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46673 * 299.99315 * 19 17 15 23 23 N 1.31215 * 125.97324 * 180.30275 * 10 9 7 24 24 C 1.47154 * 118.03383 * 309.71667 * 6 5 3 25 25 C 1.52876 * 108.60814 * 50.22419 * 24 6 5 26 26 H 1.09003 * 109.62852 * 187.90005 * 25 24 6 27 27 C 1.53001 * 109.36560 * 67.81966 * 25 24 6 28 28 O 1.42962 * 109.29898 * 307.93614 * 25 24 6 29 29 H 1.08995 * 109.47012 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46654 * 299.99971 * 1 2 3 31 31 H 1.08990 * 109.47166 * 60.00297 * 1 2 3 32 32 H 1.08993 * 109.47211 * 239.99549 * 2 1 3 33 33 H 1.09004 * 109.47053 * 119.99801 * 2 1 3 34 34 H 1.09001 * 109.68230 * 52.50184 * 5 3 2 35 35 H 1.09006 * 109.71293 * 291.96700 * 5 3 2 36 36 H 0.97006 * 119.99615 * 354.87457 * 9 7 6 37 37 H 1.08003 * 126.05967 * 359.97438 * 11 10 9 38 38 H 1.07993 * 126.07146 * 180.02562 * 12 11 10 39 39 H 1.09008 * 109.46590 * 4.99580 * 14 13 12 40 40 H 1.08995 * 109.47040 * 245.00040 * 14 13 12 41 41 H 0.97005 * 119.99785 * 359.73397 * 18 17 15 42 42 H 1.08999 * 109.68599 * 170.00795 * 24 6 5 43 43 H 1.08999 * 109.67820 * 290.55807 * 24 6 5 44 44 H 1.08994 * 109.47320 * 300.24701 * 27 25 24 45 45 H 1.08993 * 109.47409 * 60.25517 * 27 25 24 46 46 H 1.09008 * 109.46956 * 180.25132 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9827 0.8406 5 6 3.5678 1.4454 0.1259 6 7 4.0465 2.8238 -0.0644 7 6 4.8912 3.3931 0.8182 8 8 5.2009 4.5624 0.6959 9 7 5.3925 2.6661 1.8363 10 6 6.3528 3.2255 2.6908 11 6 6.8795 4.5240 2.6021 12 6 7.7746 4.6782 3.6041 13 7 7.8168 3.5242 4.3026 14 6 8.6565 3.2567 5.4729 15 6 7.7904 2.8027 6.6195 16 1 6.7213 2.7211 6.4894 17 6 8.3627 2.4914 7.8347 18 7 9.6639 2.5959 7.9947 19 14 7.2892 1.9280 9.2558 20 1 6.5685 0.6881 8.8705 21 1 8.1405 1.6570 10.4420 22 1 6.3052 2.9907 9.5844 23 7 6.9210 2.6251 3.7099 24 6 3.5709 3.5646 -1.2436 25 6 2.0472 3.4565 -1.3057 26 1 1.6882 3.8780 -2.2446 27 6 1.4358 4.2261 -0.1332 28 8 1.6674 2.0807 -1.2238 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.0003 0.7980 -0.6369 35 1 3.8558 1.0901 1.1154 36 1 5.0888 1.7557 1.9778 37 1 6.6169 5.2674 1.8639 38 1 8.3529 5.5669 3.8089 39 1 9.1861 4.1666 5.7556 40 1 9.3782 2.4764 5.2315 41 1 10.2214 2.8882 7.2566 42 1 3.8604 4.6121 -1.1605 43 1 4.0037 3.1341 -2.1466 44 1 1.7965 3.8053 0.8053 45 1 1.7257 5.2749 -0.1963 46 1 0.3494 4.1465 -0.1733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173367441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:52 Heat of formation + Delta-G solvation = 14.535941 kcal Electronic energy + Delta-G solvation = -27592.749581 eV Core-core repulsion = 23712.870975 eV Total energy + Delta-G solvation = -3879.878606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.17759 -40.34800 -38.92719 -35.22192 -35.02612 -34.55242 -33.61170 -31.63298 -30.73346 -29.37709 -28.96140 -27.07288 -25.97130 -24.47845 -23.27557 -22.52626 -21.48337 -20.61963 -20.12614 -19.24499 -18.21367 -17.20656 -17.15644 -16.66116 -16.38507 -15.85001 -15.25452 -14.99348 -14.82047 -14.46670 -14.31867 -14.12299 -13.87880 -13.79998 -13.69799 -13.20558 -12.63431 -12.58313 -12.41700 -12.33329 -12.18416 -12.14819 -11.82394 -11.55483 -11.49009 -11.32586 -11.18247 -10.84130 -10.74788 -10.50322 -10.34479 -10.17101 -10.13283 -9.73557 -9.03159 -8.79391 -8.58689 -8.19790 -7.49065 -6.58822 -4.32813 2.15852 2.54668 2.99119 3.24075 3.30885 3.37011 3.38488 3.57704 3.72741 3.95807 4.22494 4.39911 4.41089 4.58113 4.60731 4.70524 4.82780 4.88148 4.93930 5.11315 5.14867 5.25356 5.29378 5.41413 5.42753 5.44625 5.52996 5.60365 5.63212 5.69740 5.76493 5.88445 5.96639 6.00182 6.21388 6.42915 6.44685 6.64436 6.72319 6.82035 6.84415 7.38568 7.59421 7.79130 7.83915 8.33760 8.45881 8.54491 8.61948 9.35385 10.78710 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002807 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.607201 B = 9972.594512 C =11142.345638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.074 3.926 4 H 0.070 0.930 5 C 0.079 3.921 6 N -0.628 5.628 7 C 0.719 3.281 8 O -0.563 6.563 9 N -0.643 5.643 10 C 0.276 3.724 11 C -0.283 4.283 12 C 0.051 3.949 13 N -0.319 5.319 14 C 0.250 3.750 15 C -0.608 4.608 16 H 0.063 0.937 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 1.077 2.923 20 H -0.285 1.285 21 H -0.280 1.280 22 H -0.286 1.286 23 N -0.305 5.305 24 C 0.102 3.898 25 C 0.074 3.926 26 H 0.115 0.885 27 C -0.182 4.182 28 O -0.368 6.368 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.405 0.595 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.267 0.733 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.303 -1.491 -19.594 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.016 3.984 4 H 0.088 0.912 5 C -0.045 4.045 6 N -0.367 5.367 7 C 0.420 3.580 8 O -0.438 6.438 9 N -0.295 5.295 10 C 0.022 3.978 11 C -0.315 4.315 12 C -0.099 4.099 13 N -0.100 5.100 14 C 0.132 3.868 15 C -0.646 4.646 16 H 0.081 0.919 17 C -0.182 4.182 18 N -0.540 5.540 19 Si 0.904 3.096 20 H -0.212 1.212 21 H -0.205 1.205 22 H -0.212 1.212 23 N -0.136 5.136 24 C -0.021 4.021 25 C 0.016 3.984 26 H 0.133 0.867 27 C -0.240 4.240 28 O -0.287 6.287 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.242 0.758 37 H 0.179 0.821 38 H 0.185 0.815 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.124 0.876 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.940 -2.299 -17.461 23.754 hybrid contribution -0.019 0.854 -1.735 1.934 sum -15.959 -1.445 -19.196 25.005 Atomic orbital electron populations 1.21691 0.94844 1.01710 1.02354 1.21528 0.97157 0.93509 1.03184 1.22535 0.92617 0.94821 0.88459 0.91221 1.22431 0.95550 0.83579 1.02936 1.47159 1.49137 1.14681 1.25758 1.15460 0.79059 0.84424 0.79014 1.90857 1.63256 1.14342 1.75366 1.41548 1.41863 1.17145 1.28967 1.18791 0.93440 0.93022 0.92511 1.21499 1.05946 0.98022 1.06003 1.22551 1.00927 0.92317 0.94082 1.48764 1.30252 1.07794 1.23218 1.19748 0.89315 0.97627 0.80137 1.22104 0.95622 1.50256 0.96617 0.91865 1.25925 0.97704 0.94371 1.00187 1.70853 1.04382 1.43517 1.35281 0.83421 0.74543 0.76577 0.75098 1.21151 1.20511 1.21232 1.77340 1.09560 1.16605 1.10066 1.22129 0.94017 0.99271 0.86714 1.22550 0.93287 0.82417 1.00156 0.86707 1.22366 1.01285 1.01243 0.99073 1.88007 1.79951 1.23302 1.37416 0.92570 0.92855 0.91904 0.90752 0.90162 0.90085 0.89511 0.75771 0.82107 0.81506 0.93615 0.94824 0.92268 0.87614 0.90763 0.92036 0.91065 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.81 37.16 0.36 -0.61 16 2 C -0.12 -0.76 5.64 -26.73 -0.15 -0.91 16 3 C 0.07 0.60 2.39 -26.58 -0.06 0.54 16 4 H 0.07 0.61 6.26 -51.93 -0.32 0.29 16 5 C 0.08 0.68 5.86 -3.53 -0.02 0.66 16 6 N -0.63 -7.01 2.54 -178.26 -0.45 -7.47 16 7 C 0.72 10.93 8.28 -86.92 -0.72 10.21 16 8 O -0.56 -10.15 12.96 5.29 0.07 -10.08 16 9 N -0.64 -10.37 5.36 -15.51 -0.08 -10.45 16 10 C 0.28 5.66 8.11 -154.36 -1.25 4.41 16 11 C -0.28 -5.72 9.61 -39.83 -0.38 -6.10 16 12 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 13 N -0.32 -7.51 3.67 -62.57 -0.23 -7.74 16 14 C 0.25 6.35 5.57 -5.20 -0.03 6.33 16 15 C -0.61 -17.14 9.24 -34.44 -0.32 -17.46 16 16 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 17 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 18 N -0.90 -26.37 13.65 55.43 0.76 -25.62 16 19 Si 1.08 24.89 29.90 -169.99 -5.08 19.81 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 N -0.30 -7.12 12.43 31.44 0.39 -6.73 16 24 C 0.10 0.95 6.00 -3.75 -0.02 0.93 16 25 C 0.07 0.59 3.93 -26.79 -0.11 0.49 16 26 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 27 C -0.18 -1.56 8.79 37.16 0.33 -1.23 16 28 O -0.37 -3.25 9.78 -35.23 -0.34 -3.59 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.45 7.83 -51.93 -0.41 0.05 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.69 5.77 -51.93 -0.30 0.39 16 36 H 0.41 5.44 6.38 -40.82 -0.26 5.18 16 37 H 0.16 3.17 5.93 -52.48 -0.31 2.86 16 38 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 39 H 0.05 1.12 7.93 -51.92 -0.41 0.71 16 40 H 0.03 0.89 8.01 -51.93 -0.42 0.47 16 41 H 0.27 7.61 7.22 -40.82 -0.29 7.32 16 42 H 0.11 1.09 7.05 -51.93 -0.37 0.72 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.64 6.11 -51.93 -0.32 0.32 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -33.78 369.37 -8.92 -42.70 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.84 Total: 4.97 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.67 Total: -1.38 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.38 Total: -58.00 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.28 Total: -13.67 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.78 -8.92 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173367441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.238 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds