Wall clock time and date at job start Tue Mar 31 2020 12:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46995 * 2 1 4 4 H 1.09000 * 109.51440 * 54.90001 * 3 2 1 5 5 C 1.53296 * 109.51203 * 175.00006 * 3 2 1 6 6 N 1.47152 * 108.38692 * 172.22597 * 5 3 2 7 7 C 1.34775 * 120.98757 * 129.44102 * 6 5 3 8 8 O 1.21585 * 120.00262 * 185.21337 * 7 6 5 9 9 N 1.34779 * 119.99828 * 5.21504 * 7 6 5 10 10 C 1.40188 * 120.00100 * 174.87823 * 9 7 6 11 11 C 1.40404 * 125.97576 * 359.97438 * 10 9 7 12 12 C 1.35241 * 107.87150 * 180.02562 * 11 10 9 13 13 N 1.34967 * 107.85914 * 0.02562 * 12 11 10 14 14 C 1.46498 * 125.98070 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47255 * 124.99798 * 14 13 12 16 16 H 1.08003 * 120.00423 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00134 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99789 * 0.26915 * 17 15 14 19 19 Si 1.86800 * 120.00323 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47376 * 59.99284 * 19 17 15 21 21 H 1.48497 * 109.47014 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46673 * 299.99315 * 19 17 15 23 23 N 1.31215 * 125.97324 * 180.30275 * 10 9 7 24 24 C 1.47154 * 118.03383 * 309.71667 * 6 5 3 25 25 C 1.52876 * 108.60814 * 50.22419 * 24 6 5 26 26 H 1.09003 * 109.62852 * 187.90005 * 25 24 6 27 27 C 1.53001 * 109.36560 * 67.81966 * 25 24 6 28 28 O 1.42962 * 109.29898 * 307.93614 * 25 24 6 29 29 H 1.08995 * 109.47012 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46654 * 299.99971 * 1 2 3 31 31 H 1.08990 * 109.47166 * 60.00297 * 1 2 3 32 32 H 1.08993 * 109.47211 * 239.99549 * 2 1 3 33 33 H 1.09004 * 109.47053 * 119.99801 * 2 1 3 34 34 H 1.09001 * 109.68230 * 52.50184 * 5 3 2 35 35 H 1.09006 * 109.71293 * 291.96700 * 5 3 2 36 36 H 0.97006 * 119.99615 * 354.87457 * 9 7 6 37 37 H 1.08003 * 126.05967 * 359.97438 * 11 10 9 38 38 H 1.07993 * 126.07146 * 180.02562 * 12 11 10 39 39 H 1.09008 * 109.46590 * 4.99580 * 14 13 12 40 40 H 1.08995 * 109.47040 * 245.00040 * 14 13 12 41 41 H 0.97005 * 119.99785 * 359.73397 * 18 17 15 42 42 H 1.08999 * 109.68599 * 170.00795 * 24 6 5 43 43 H 1.08999 * 109.67820 * 290.55807 * 24 6 5 44 44 H 1.08994 * 109.47320 * 300.24701 * 27 25 24 45 45 H 1.08993 * 109.47409 * 60.25517 * 27 25 24 46 46 H 1.09008 * 109.46956 * 180.25132 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9827 0.8406 5 6 3.5678 1.4454 0.1259 6 7 4.0465 2.8238 -0.0644 7 6 4.8912 3.3931 0.8182 8 8 5.2009 4.5624 0.6959 9 7 5.3925 2.6661 1.8363 10 6 6.3528 3.2255 2.6908 11 6 6.8795 4.5240 2.6021 12 6 7.7746 4.6782 3.6041 13 7 7.8168 3.5242 4.3026 14 6 8.6565 3.2567 5.4729 15 6 7.7904 2.8027 6.6195 16 1 6.7213 2.7211 6.4894 17 6 8.3627 2.4914 7.8347 18 7 9.6639 2.5959 7.9947 19 14 7.2892 1.9280 9.2558 20 1 6.5685 0.6881 8.8705 21 1 8.1405 1.6570 10.4420 22 1 6.3052 2.9907 9.5844 23 7 6.9210 2.6251 3.7099 24 6 3.5709 3.5646 -1.2436 25 6 2.0472 3.4565 -1.3057 26 1 1.6882 3.8780 -2.2446 27 6 1.4358 4.2261 -0.1332 28 8 1.6674 2.0807 -1.2238 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.0003 0.7980 -0.6369 35 1 3.8558 1.0901 1.1154 36 1 5.0888 1.7557 1.9778 37 1 6.6169 5.2674 1.8639 38 1 8.3529 5.5669 3.8089 39 1 9.1861 4.1666 5.7556 40 1 9.3782 2.4764 5.2315 41 1 10.2214 2.8882 7.2566 42 1 3.8604 4.6121 -1.1605 43 1 4.0037 3.1341 -2.1466 44 1 1.7965 3.8053 0.8053 45 1 1.7257 5.2749 -0.1963 46 1 0.3494 4.1465 -0.1733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173367441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:51 Heat of formation + Delta-G solvation = -6.133138 kcal Electronic energy + Delta-G solvation = -27593.645859 eV Core-core repulsion = 23712.870975 eV Total energy + Delta-G solvation = -3880.774884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.45639 -41.61812 -39.96949 -36.55792 -36.04121 -35.66536 -35.15867 -32.76622 -32.06677 -31.02981 -29.67918 -28.45013 -27.39985 -25.17933 -25.10767 -23.55459 -22.62965 -22.03106 -21.22618 -20.33204 -19.37773 -19.19659 -18.25307 -17.79735 -17.28961 -17.12004 -16.44205 -16.20342 -15.77072 -15.73091 -15.54076 -15.43822 -15.07989 -14.97221 -14.57586 -14.50066 -14.12283 -13.94908 -13.75570 -13.27406 -13.25313 -13.08284 -13.04827 -12.81177 -12.61871 -12.19812 -12.06907 -12.06664 -11.95670 -11.88125 -11.73372 -11.51124 -11.11433 -11.04370 -11.01683 -10.69705 -9.90395 -9.67586 -9.15168 -8.77624 -6.56315 0.91406 0.99149 1.50729 1.56978 1.57617 1.78250 1.86093 2.27125 2.48037 2.65653 2.68692 3.00863 3.54785 3.71898 3.78330 3.93341 3.94589 4.05096 4.09569 4.20812 4.25064 4.37926 4.45598 4.53948 4.55965 4.66394 4.70399 4.75619 4.77681 4.80396 4.83259 4.86791 4.99526 5.03266 5.13972 5.17488 5.26277 5.36306 5.45839 5.50947 5.64365 5.81225 5.92443 6.16613 6.26165 6.40554 6.47049 6.97374 7.19465 7.24971 8.58060 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002807 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.607201 B = 9972.594512 C =11142.345638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.060 0.940 5 C 0.074 3.926 6 N -0.618 5.618 7 C 0.716 3.284 8 O -0.594 6.594 9 N -0.638 5.638 10 C 0.286 3.714 11 C -0.289 4.289 12 C 0.057 3.943 13 N -0.344 5.344 14 C 0.260 3.740 15 C -0.622 4.622 16 H 0.045 0.955 17 C -0.019 4.019 18 N -0.923 5.923 19 Si 1.120 2.880 20 H -0.274 1.274 21 H -0.275 1.275 22 H -0.272 1.272 23 N -0.346 5.346 24 C 0.098 3.902 25 C 0.079 3.921 26 H 0.141 0.859 27 C -0.179 4.179 28 O -0.372 6.372 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.417 0.583 37 H 0.168 0.832 38 H 0.202 0.798 39 H 0.054 0.946 40 H 0.017 0.983 41 H 0.261 0.739 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.040 0.960 45 H 0.069 0.931 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 -1.902 -20.585 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.018 3.982 4 H 0.078 0.922 5 C -0.049 4.049 6 N -0.356 5.356 7 C 0.418 3.582 8 O -0.472 6.472 9 N -0.291 5.291 10 C 0.030 3.970 11 C -0.320 4.320 12 C -0.091 4.091 13 N -0.126 5.126 14 C 0.141 3.859 15 C -0.660 4.660 16 H 0.063 0.937 17 C -0.218 4.218 18 N -0.559 5.559 19 Si 0.940 3.060 20 H -0.200 1.200 21 H -0.200 1.200 22 H -0.197 1.197 23 N -0.177 5.177 24 C -0.025 4.025 25 C 0.021 3.979 26 H 0.159 0.841 27 C -0.236 4.236 28 O -0.291 6.291 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.256 0.744 37 H 0.186 0.814 38 H 0.219 0.781 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.484 -2.731 -18.516 25.612 hybrid contribution 0.375 1.005 -1.592 1.920 sum -17.109 -1.726 -20.108 26.458 Atomic orbital electron populations 1.21674 0.94837 1.02168 1.01788 1.21550 0.97109 0.92446 1.04024 1.22553 0.91936 0.95674 0.88012 0.92160 1.22671 0.96129 0.82206 1.03869 1.47231 1.47614 1.15689 1.25055 1.15613 0.79437 0.84075 0.79110 1.90823 1.64551 1.15694 1.76091 1.41566 1.41118 1.17805 1.28655 1.19084 0.93034 0.93079 0.91794 1.21678 1.06014 0.98151 1.06176 1.23167 1.00578 0.92311 0.93084 1.48563 1.31271 1.09046 1.23689 1.19419 0.88966 0.97238 0.80302 1.22290 0.95077 1.50673 0.97956 0.93652 1.27280 0.98124 0.93744 1.02673 1.70949 1.05033 1.44727 1.35230 0.82886 0.73514 0.77031 0.72542 1.19953 1.19980 1.19698 1.77257 1.11007 1.17747 1.11664 1.22340 0.95160 0.98665 0.86314 1.22632 0.92069 0.82189 1.01017 0.84140 1.22337 1.01840 1.01114 0.98352 1.88016 1.79932 1.23570 1.37614 0.91627 0.93218 0.92655 0.90163 0.89067 0.88460 0.89004 0.74394 0.81432 0.78091 0.92808 0.96540 0.92955 0.88689 0.89133 0.94110 0.91178 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.81 71.98 0.71 -0.96 16 2 C -0.11 -1.24 5.64 30.59 0.17 -1.07 16 3 C 0.08 1.10 2.39 30.69 0.07 1.18 16 4 H 0.06 1.00 6.26 -2.39 -0.01 0.98 16 5 C 0.07 1.14 5.86 86.35 0.51 1.64 16 6 N -0.62 -12.97 2.54 -836.15 -2.13 -15.10 16 7 C 0.72 21.25 8.28 179.05 1.48 22.73 16 8 O -0.59 -21.16 12.96 -3.98 -0.05 -21.21 16 9 N -0.64 -20.21 5.36 -321.23 -1.72 -21.93 16 10 C 0.29 11.67 8.11 133.31 1.08 12.75 16 11 C -0.29 -11.53 9.61 22.11 0.21 -11.32 16 12 C 0.06 2.26 11.44 83.52 0.96 3.22 16 13 N -0.34 -16.34 3.67 -351.86 -1.29 -17.63 16 14 C 0.26 13.45 5.57 85.63 0.48 13.93 16 15 C -0.62 -35.51 9.24 25.60 0.24 -35.27 16 16 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 17 C -0.02 -1.04 5.46 84.66 0.46 -0.58 16 18 N -0.92 -54.04 13.65 21.45 0.29 -53.75 16 19 Si 1.12 49.61 29.90 68.60 2.05 51.66 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 23 N -0.35 -16.32 12.43 -54.43 -0.68 -16.99 16 24 C 0.10 1.66 6.00 86.21 0.52 2.18 16 25 C 0.08 1.10 3.93 30.55 0.12 1.22 16 26 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 27 C -0.18 -2.85 8.79 71.98 0.63 -2.22 16 28 O -0.37 -5.75 9.78 -148.98 -1.46 -7.21 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.71 7.83 -2.39 -0.02 0.69 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.32 5.77 -2.38 -0.01 1.30 16 36 H 0.42 10.89 6.38 -92.70 -0.59 10.30 16 37 H 0.17 6.50 5.93 -2.91 -0.02 6.48 16 38 H 0.20 6.31 8.06 -2.91 -0.02 6.28 16 39 H 0.05 2.67 7.93 -2.38 -0.02 2.65 16 40 H 0.02 0.91 8.01 -2.39 -0.02 0.89 16 41 H 0.26 15.10 7.22 -92.70 -0.67 14.43 16 42 H 0.09 1.87 7.05 -2.39 -0.02 1.85 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.04 0.82 6.11 -2.39 -0.01 0.80 16 45 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -72.63 369.37 3.16 -69.47 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.50 Total: 25.27 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 7.63 Total: 7.42 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -5.52 Total: -125.41 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.51 Total: -28.42 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.05 Total: 51.66 kcal Total: -72.63 3.16 -69.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173367441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.341 kcal (2) G-P(sol) polarization free energy of solvation -72.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds