Wall clock time and date at job start Tue Mar 31 2020 12:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47145 * 2 1 4 4 H 1.09001 * 109.51046 * 305.09537 * 3 2 1 5 5 C 1.53300 * 109.51423 * 184.99819 * 3 2 1 6 6 N 1.47152 * 108.38456 * 187.77517 * 5 3 2 7 7 C 1.34777 * 120.97793 * 230.51196 * 6 5 3 8 8 O 1.21590 * 119.99844 * 184.98939 * 7 6 5 9 9 N 1.34775 * 120.00269 * 4.98245 * 7 6 5 10 10 C 1.40195 * 120.00166 * 174.78202 * 9 7 6 11 11 C 1.40397 * 125.97064 * 0.02562 * 10 9 7 12 12 C 1.35247 * 107.86892 * 179.97438 * 11 10 9 13 13 N 1.34963 * 107.85647 * 0.02562 * 12 11 10 14 14 C 1.46495 * 125.97662 * 179.97438 * 13 12 11 15 15 C 1.50709 * 109.47226 * 125.00341 * 14 13 12 16 16 H 1.07996 * 119.99539 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00022 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99799 * 180.27613 * 17 15 14 19 19 Si 1.86797 * 120.00171 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47024 * 90.00373 * 19 17 15 21 21 H 1.48504 * 109.47350 * 210.00377 * 19 17 15 22 22 H 1.48506 * 109.47202 * 330.00684 * 19 17 15 23 23 N 1.31204 * 125.97143 * 180.33173 * 10 9 7 24 24 C 1.47151 * 118.03673 * 50.78095 * 6 5 3 25 25 C 1.53713 * 108.16489 * 309.15980 * 24 6 5 26 26 H 1.08999 * 109.44043 * 172.37534 * 25 24 6 27 27 C 1.53000 * 109.65473 * 292.57625 * 25 24 6 28 28 O 1.42959 * 109.51381 * 65.24719 * 3 2 1 29 29 H 1.09002 * 109.46515 * 60.00690 * 1 2 3 30 30 H 1.09002 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47547 * 300.00460 * 1 2 3 32 32 H 1.08996 * 109.47572 * 239.99048 * 2 1 3 33 33 H 1.09008 * 109.47042 * 119.99745 * 2 1 3 34 34 H 1.08998 * 109.67990 * 68.04344 * 5 3 2 35 35 H 1.09007 * 109.70573 * 307.51350 * 5 3 2 36 36 H 0.97003 * 120.00085 * 354.78969 * 9 7 6 37 37 H 1.08003 * 126.06723 * 0.03441 * 11 10 9 38 38 H 1.07995 * 126.07174 * 180.02562 * 12 11 10 39 39 H 1.08996 * 109.47172 * 5.00219 * 14 13 12 40 40 H 1.09000 * 109.47663 * 244.99779 * 14 13 12 41 41 H 0.97003 * 119.99642 * 179.72137 * 18 17 15 42 42 H 1.09004 * 109.68215 * 68.94018 * 24 6 5 43 43 H 1.08998 * 109.67926 * 189.49082 * 24 6 5 44 44 H 1.08997 * 109.46781 * 179.74257 * 27 25 24 45 45 H 1.09001 * 109.46558 * 299.73867 * 27 25 24 46 46 H 1.08996 * 109.47369 * 59.74098 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9826 -0.8406 5 6 3.5678 1.4454 -0.1259 6 7 4.0465 2.8238 0.0645 7 6 4.8919 3.3926 -0.8177 8 8 5.3476 4.4981 -0.5970 9 7 5.2324 2.7361 -1.9444 10 6 6.0233 3.3697 -2.9132 11 6 6.5275 4.6779 -2.8393 12 6 7.2387 4.9127 -3.9655 13 7 7.1889 3.7990 -4.7262 14 6 7.8258 3.6204 -6.0333 15 6 8.7099 2.4004 -5.9989 16 1 8.7897 1.8168 -5.0937 17 6 9.4177 2.0300 -7.1226 18 7 10.1850 0.9622 -7.0942 19 14 9.2802 3.0398 -8.6880 20 1 10.3201 4.0998 -8.6862 21 1 9.4757 2.1566 -9.8658 22 1 7.9353 3.6660 -8.7567 23 7 6.4168 2.8457 -4.0498 24 6 3.5796 3.5607 1.2495 25 6 2.0471 3.4566 1.3056 26 1 1.6889 3.8780 2.2448 27 6 1.4358 4.2261 0.1329 28 8 1.6673 2.0808 1.2237 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8898 32 1 1.8934 -0.5139 -0.8898 33 1 1.8934 -0.5138 0.8901 34 1 3.8553 1.0902 -1.1155 35 1 4.0007 0.7979 0.6367 36 1 4.9302 1.8251 -2.0850 37 1 6.3753 5.3731 -2.0269 38 1 7.7548 5.8287 -4.2122 39 1 8.4274 4.4986 -6.2673 40 1 7.0586 3.4915 -6.7968 41 1 10.6798 0.6994 -7.8860 42 1 4.0133 3.1227 2.1486 43 1 3.8751 4.6070 1.1712 44 1 0.3495 4.1464 0.1730 45 1 1.7258 5.2749 0.1960 46 1 1.7966 3.8051 -0.8055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173367453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:55 Heat of formation + Delta-G solvation = 23.649369 kcal Electronic energy + Delta-G solvation = -27586.979999 eV Core-core repulsion = 23707.496581 eV Total energy + Delta-G solvation = -3879.483418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14922 -40.33024 -38.90387 -35.17607 -35.00066 -34.49078 -33.24116 -31.64162 -31.07705 -29.39702 -28.94807 -27.46031 -26.42661 -24.45778 -23.08237 -22.32402 -21.47215 -20.46809 -20.03577 -19.24434 -18.17626 -17.17911 -17.02605 -16.59936 -16.32417 -15.93135 -15.39510 -14.99959 -14.73779 -14.53267 -14.41397 -14.21337 -13.91577 -13.87336 -13.50806 -13.08228 -12.64468 -12.56075 -12.47346 -12.40991 -12.22311 -12.13738 -12.11605 -11.54831 -11.47010 -11.31057 -11.17018 -10.81097 -10.71754 -10.65871 -10.32571 -10.12203 -10.01170 -9.76865 -9.52576 -8.78615 -8.76363 -8.18120 -7.48711 -6.23827 -4.26060 2.18302 2.56289 3.00386 3.14345 3.19875 3.22204 3.29351 3.32722 3.74991 3.95990 4.22569 4.24154 4.40224 4.60021 4.62917 4.72150 4.85719 4.89046 4.95414 5.03973 5.14269 5.25230 5.31356 5.41764 5.45001 5.45832 5.54089 5.61432 5.64823 5.68842 5.78106 5.88068 5.98329 6.01428 6.22161 6.35194 6.44822 6.57127 6.70458 6.81522 6.83996 7.26898 7.40359 7.75846 7.82848 8.33593 8.48470 8.57465 8.86143 9.31193 10.88926 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.002662 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.462054 B =10517.580782 C =11314.718448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.075 3.925 4 H 0.070 0.930 5 C 0.079 3.921 6 N -0.629 5.629 7 C 0.720 3.280 8 O -0.563 6.563 9 N -0.644 5.644 10 C 0.278 3.722 11 C -0.282 4.282 12 C 0.051 3.949 13 N -0.320 5.320 14 C 0.232 3.768 15 C -0.534 4.534 16 H 0.085 0.915 17 C 0.076 3.924 18 N -0.888 5.888 19 Si 0.873 3.127 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.264 1.264 23 N -0.300 5.300 24 C 0.103 3.897 25 C 0.074 3.926 26 H 0.115 0.885 27 C -0.182 4.182 28 O -0.368 6.368 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.406 0.594 37 H 0.162 0.838 38 H 0.169 0.831 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.268 0.732 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.118 3.088 15.998 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.016 3.984 4 H 0.088 0.912 5 C -0.045 4.045 6 N -0.368 5.368 7 C 0.421 3.579 8 O -0.439 6.439 9 N -0.296 5.296 10 C 0.023 3.977 11 C -0.313 4.313 12 C -0.098 4.098 13 N -0.102 5.102 14 C 0.113 3.887 15 C -0.572 4.572 16 H 0.103 0.897 17 C -0.128 4.128 18 N -0.525 5.525 19 Si 0.699 3.301 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 N -0.131 5.131 24 C -0.020 4.020 25 C 0.016 3.984 26 H 0.132 0.868 27 C -0.239 4.239 28 O -0.287 6.287 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.243 0.757 37 H 0.179 0.821 38 H 0.186 0.814 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.123 0.877 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.717 2.654 15.309 24.326 hybrid contribution 0.219 0.653 -0.728 1.002 sum -18.499 3.307 14.581 23.785 Atomic orbital electron populations 1.21690 0.94879 1.01698 1.02315 1.21533 0.97117 0.93544 1.03230 1.22537 0.92662 0.94788 0.88412 0.91237 1.22438 0.95507 0.83554 1.03021 1.47169 1.49220 1.14821 1.25547 1.15460 0.79366 0.83845 0.79266 1.90858 1.56951 1.19626 1.76436 1.41556 1.53286 1.17412 1.17298 1.18794 0.96436 0.92399 0.90027 1.21510 1.10257 0.97430 1.02137 1.22547 1.01379 0.93169 0.92708 1.48588 1.37018 1.07722 1.16849 1.20037 0.93042 0.99402 0.76178 1.21113 1.25437 1.09708 1.00971 0.89658 1.24834 0.94543 0.95020 0.98375 1.69876 1.28445 1.24332 1.29876 0.86907 0.79205 0.80582 0.83398 1.19705 1.20545 1.18860 1.77380 1.15276 1.14500 1.05900 1.22297 0.93835 0.99197 0.86704 1.22708 0.93223 0.82412 1.00077 0.86767 1.22355 1.01311 1.01173 0.99105 1.88006 1.79918 1.23296 1.37463 0.92883 0.92582 0.91923 0.90129 0.90740 0.89458 0.90032 0.75702 0.82078 0.81395 0.93327 0.94072 0.92184 0.90701 0.87714 0.91748 0.91132 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.81 37.16 0.36 -0.60 16 2 C -0.12 -0.76 5.64 -26.73 -0.15 -0.91 16 3 C 0.07 0.60 2.39 -26.58 -0.06 0.53 16 4 H 0.07 0.60 6.26 -51.93 -0.32 0.27 16 5 C 0.08 0.68 5.92 -3.53 -0.02 0.66 16 6 N -0.63 -7.02 2.53 -177.74 -0.45 -7.47 16 7 C 0.72 10.89 8.28 -86.92 -0.72 10.17 16 8 O -0.56 -10.11 12.99 5.29 0.07 -10.04 16 9 N -0.64 -10.30 5.37 -15.51 -0.08 -10.38 16 10 C 0.28 5.60 8.11 -154.37 -1.25 4.35 16 11 C -0.28 -5.54 9.61 -39.83 -0.38 -5.93 16 12 C 0.05 0.99 11.44 -17.24 -0.20 0.80 16 13 N -0.32 -7.27 3.67 -62.56 -0.23 -7.50 16 14 C 0.23 5.51 5.33 -5.19 -0.03 5.48 16 15 C -0.53 -15.08 9.79 -34.44 -0.34 -15.42 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 19 Si 0.87 20.09 27.47 -169.99 -4.67 15.42 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 23 N -0.30 -6.88 12.43 31.44 0.39 -6.49 16 24 C 0.10 0.96 6.04 -3.32 -0.02 0.94 16 25 C 0.07 0.58 3.93 -26.36 -0.10 0.48 16 26 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 27 C -0.18 -1.49 8.82 37.16 0.33 -1.16 16 28 O -0.37 -3.23 9.77 -35.23 -0.34 -3.57 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.45 7.83 -51.93 -0.41 0.04 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.09 0.70 5.66 -51.93 -0.29 0.41 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.41 5.45 6.34 -40.82 -0.26 5.20 16 37 H 0.16 3.10 5.93 -52.48 -0.31 2.79 16 38 H 0.17 2.57 8.06 -52.49 -0.42 2.14 16 39 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 40 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 1.07 7.11 -51.93 -0.37 0.70 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.61 6.11 -51.93 -0.32 0.29 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -34.15 367.13 -8.55 -42.70 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.86 Total: 6.22 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -2.68 Total: 1.42 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.40 Total: -57.68 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.28 Total: -13.61 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.15 -8.55 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173367453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.353 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds