Wall clock time and date at job start Tue Mar 31 2020 12:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47145 * 2 1 4 4 H 1.09001 * 109.51046 * 305.09537 * 3 2 1 5 5 C 1.53300 * 109.51423 * 184.99819 * 3 2 1 6 6 N 1.47152 * 108.38456 * 187.77517 * 5 3 2 7 7 C 1.34777 * 120.97793 * 230.51196 * 6 5 3 8 8 O 1.21590 * 119.99844 * 184.98939 * 7 6 5 9 9 N 1.34775 * 120.00269 * 4.98245 * 7 6 5 10 10 C 1.40195 * 120.00166 * 174.78202 * 9 7 6 11 11 C 1.40397 * 125.97064 * 0.02562 * 10 9 7 12 12 C 1.35247 * 107.86892 * 179.97438 * 11 10 9 13 13 N 1.34963 * 107.85647 * 0.02562 * 12 11 10 14 14 C 1.46495 * 125.97662 * 179.97438 * 13 12 11 15 15 C 1.50709 * 109.47226 * 125.00341 * 14 13 12 16 16 H 1.07996 * 119.99539 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00022 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99799 * 180.27613 * 17 15 14 19 19 Si 1.86797 * 120.00171 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47024 * 90.00373 * 19 17 15 21 21 H 1.48504 * 109.47350 * 210.00377 * 19 17 15 22 22 H 1.48506 * 109.47202 * 330.00684 * 19 17 15 23 23 N 1.31204 * 125.97143 * 180.33173 * 10 9 7 24 24 C 1.47151 * 118.03673 * 50.78095 * 6 5 3 25 25 C 1.53713 * 108.16489 * 309.15980 * 24 6 5 26 26 H 1.08999 * 109.44043 * 172.37534 * 25 24 6 27 27 C 1.53000 * 109.65473 * 292.57625 * 25 24 6 28 28 O 1.42959 * 109.51381 * 65.24719 * 3 2 1 29 29 H 1.09002 * 109.46515 * 60.00690 * 1 2 3 30 30 H 1.09002 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47547 * 300.00460 * 1 2 3 32 32 H 1.08996 * 109.47572 * 239.99048 * 2 1 3 33 33 H 1.09008 * 109.47042 * 119.99745 * 2 1 3 34 34 H 1.08998 * 109.67990 * 68.04344 * 5 3 2 35 35 H 1.09007 * 109.70573 * 307.51350 * 5 3 2 36 36 H 0.97003 * 120.00085 * 354.78969 * 9 7 6 37 37 H 1.08003 * 126.06723 * 0.03441 * 11 10 9 38 38 H 1.07995 * 126.07174 * 180.02562 * 12 11 10 39 39 H 1.08996 * 109.47172 * 5.00219 * 14 13 12 40 40 H 1.09000 * 109.47663 * 244.99779 * 14 13 12 41 41 H 0.97003 * 119.99642 * 179.72137 * 18 17 15 42 42 H 1.09004 * 109.68215 * 68.94018 * 24 6 5 43 43 H 1.08998 * 109.67926 * 189.49082 * 24 6 5 44 44 H 1.08997 * 109.46781 * 179.74257 * 27 25 24 45 45 H 1.09001 * 109.46558 * 299.73867 * 27 25 24 46 46 H 1.08996 * 109.47369 * 59.74098 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9826 -0.8406 5 6 3.5678 1.4454 -0.1259 6 7 4.0465 2.8238 0.0645 7 6 4.8919 3.3926 -0.8177 8 8 5.3476 4.4981 -0.5970 9 7 5.2324 2.7361 -1.9444 10 6 6.0233 3.3697 -2.9132 11 6 6.5275 4.6779 -2.8393 12 6 7.2387 4.9127 -3.9655 13 7 7.1889 3.7990 -4.7262 14 6 7.8258 3.6204 -6.0333 15 6 8.7099 2.4004 -5.9989 16 1 8.7897 1.8168 -5.0937 17 6 9.4177 2.0300 -7.1226 18 7 10.1850 0.9622 -7.0942 19 14 9.2802 3.0398 -8.6880 20 1 10.3201 4.0998 -8.6862 21 1 9.4757 2.1566 -9.8658 22 1 7.9353 3.6660 -8.7567 23 7 6.4168 2.8457 -4.0498 24 6 3.5796 3.5607 1.2495 25 6 2.0471 3.4566 1.3056 26 1 1.6889 3.8780 2.2448 27 6 1.4358 4.2261 0.1329 28 8 1.6673 2.0808 1.2237 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8898 32 1 1.8934 -0.5139 -0.8898 33 1 1.8934 -0.5138 0.8901 34 1 3.8553 1.0902 -1.1155 35 1 4.0007 0.7979 0.6367 36 1 4.9302 1.8251 -2.0850 37 1 6.3753 5.3731 -2.0269 38 1 7.7548 5.8287 -4.2122 39 1 8.4274 4.4986 -6.2673 40 1 7.0586 3.4915 -6.7968 41 1 10.6798 0.6994 -7.8860 42 1 4.0133 3.1227 2.1486 43 1 3.8751 4.6070 1.1712 44 1 0.3495 4.1464 0.1730 45 1 1.7258 5.2749 0.1960 46 1 1.7966 3.8051 -0.8055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173367453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:54 Heat of formation + Delta-G solvation = 1.270258 kcal Electronic energy + Delta-G solvation = -27587.950430 eV Core-core repulsion = 23707.496581 eV Total energy + Delta-G solvation = -3880.453849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40039 -41.56442 -39.93366 -36.41523 -35.99076 -35.42820 -35.01884 -33.09395 -32.11112 -30.98130 -29.67726 -29.09513 -27.50289 -25.15659 -24.66854 -23.45187 -22.57775 -21.82261 -21.18244 -20.31928 -19.29100 -19.10376 -18.18470 -17.81003 -17.26258 -17.13324 -16.66664 -16.29794 -15.78732 -15.63862 -15.50882 -15.39059 -14.96780 -14.80975 -14.54657 -14.47204 -14.36538 -13.89371 -13.86485 -13.25455 -13.12284 -13.04225 -12.96199 -12.79458 -12.53569 -12.33126 -12.18283 -12.05026 -11.87346 -11.83188 -11.66170 -11.54301 -11.43963 -11.06929 -11.05529 -10.86759 -9.84029 -9.63082 -9.04418 -8.37385 -6.47694 0.96030 1.06834 1.36932 1.39950 1.49628 1.62889 1.92895 2.29189 2.32294 2.68125 2.71108 2.95312 3.55477 3.71282 3.83617 3.94878 3.97972 4.06951 4.15511 4.23314 4.26865 4.38942 4.47632 4.55909 4.59959 4.68486 4.74959 4.79410 4.80777 4.84577 4.88268 4.91653 5.00833 5.07019 5.14947 5.19369 5.24128 5.27382 5.39860 5.46770 5.62874 5.88412 6.00901 6.18150 6.40327 6.49545 6.59143 7.03564 7.15387 7.27821 8.79805 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.002662 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.462054 B =10517.580782 C =11314.718448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.078 3.922 4 H 0.063 0.937 5 C 0.074 3.926 6 N -0.619 5.619 7 C 0.717 3.283 8 O -0.594 6.594 9 N -0.640 5.640 10 C 0.283 3.717 11 C -0.293 4.293 12 C 0.062 3.938 13 N -0.344 5.344 14 C 0.240 3.760 15 C -0.547 4.547 16 H 0.026 0.974 17 C 0.014 3.986 18 N -0.943 5.943 19 Si 0.956 3.044 20 H -0.253 1.253 21 H -0.281 1.281 22 H -0.239 1.239 23 N -0.349 5.349 24 C 0.098 3.902 25 C 0.079 3.921 26 H 0.140 0.860 27 C -0.178 4.178 28 O -0.373 6.373 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.415 0.585 37 H 0.167 0.833 38 H 0.212 0.788 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.272 0.728 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.432 4.606 15.895 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.020 3.980 4 H 0.081 0.919 5 C -0.049 4.049 6 N -0.357 5.357 7 C 0.418 3.582 8 O -0.472 6.472 9 N -0.293 5.293 10 C 0.027 3.973 11 C -0.324 4.324 12 C -0.086 4.086 13 N -0.126 5.126 14 C 0.120 3.880 15 C -0.585 4.585 16 H 0.044 0.956 17 C -0.185 4.185 18 N -0.582 5.582 19 Si 0.777 3.223 20 H -0.177 1.177 21 H -0.207 1.207 22 H -0.162 1.162 23 N -0.179 5.179 24 C -0.024 4.024 25 C 0.021 3.979 26 H 0.158 0.842 27 C -0.236 4.236 28 O -0.292 6.292 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.255 0.745 37 H 0.184 0.816 38 H 0.228 0.772 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.085 4.153 15.267 25.568 hybrid contribution 0.577 0.108 -0.497 0.769 sum -19.508 4.261 14.771 24.837 Atomic orbital electron populations 1.21670 0.94744 1.02150 1.01837 1.21556 0.97181 0.92546 1.03949 1.22540 0.91808 0.95613 0.88060 0.91920 1.22665 0.96254 0.82220 1.03778 1.47243 1.47730 1.15746 1.24951 1.15611 0.79702 0.83562 0.79344 1.90821 1.58279 1.20957 1.77101 1.41593 1.52850 1.17916 1.16963 1.19124 0.95638 0.92746 0.89786 1.21697 1.10717 0.97393 1.02587 1.23242 1.00238 0.93460 0.91628 1.48496 1.38153 1.08783 1.17195 1.19889 0.92586 0.98317 0.77212 1.21236 1.26917 1.11194 0.99169 0.95599 1.25926 0.93540 0.96253 1.02731 1.70055 1.29880 1.26801 1.31428 0.85612 0.80851 0.78829 0.77054 1.17742 1.20656 1.16179 1.77297 1.17153 1.16013 1.07465 1.22509 0.95096 0.98609 0.86181 1.22793 0.91871 0.82168 1.01067 0.84226 1.22323 1.01861 1.01107 0.98293 1.88013 1.79872 1.23645 1.37669 0.93101 0.91693 0.92633 0.89125 0.90321 0.89055 0.88736 0.74537 0.81574 0.77168 0.89993 0.93620 0.91882 0.89401 0.88671 0.90828 0.91064 0.93966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.81 71.98 0.71 -0.99 16 2 C -0.11 -1.32 5.64 30.59 0.17 -1.15 16 3 C 0.08 1.15 2.39 30.69 0.07 1.22 16 4 H 0.06 1.03 6.26 -2.39 -0.01 1.01 16 5 C 0.07 1.20 5.92 86.36 0.51 1.71 16 6 N -0.62 -13.37 2.53 -834.51 -2.11 -15.47 16 7 C 0.72 21.59 8.28 179.05 1.48 23.08 16 8 O -0.59 -21.30 12.99 -4.00 -0.05 -21.35 16 9 N -0.64 -20.66 5.37 -321.24 -1.72 -22.39 16 10 C 0.28 11.52 8.11 133.31 1.08 12.60 16 11 C -0.29 -11.37 9.61 22.11 0.21 -11.16 16 12 C 0.06 2.32 11.44 83.52 0.96 3.28 16 13 N -0.34 -15.53 3.67 -351.85 -1.29 -16.82 16 14 C 0.24 11.10 5.33 85.64 0.46 11.55 16 15 C -0.55 -31.65 9.79 25.60 0.25 -31.40 16 16 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 17 C 0.01 0.81 5.47 84.65 0.46 1.27 16 18 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 19 Si 0.96 40.60 27.47 68.60 1.88 42.48 16 20 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.24 -9.11 6.54 99.48 0.65 -8.46 16 23 N -0.35 -16.35 12.43 -54.44 -0.68 -17.02 16 24 C 0.10 1.72 6.04 86.50 0.52 2.24 16 25 C 0.08 1.10 3.93 30.83 0.12 1.22 16 26 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 27 C -0.18 -2.73 8.82 71.98 0.63 -2.09 16 28 O -0.37 -5.86 9.77 -148.98 -1.46 -7.31 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.72 7.83 -2.39 -0.02 0.70 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.09 1.41 5.66 -2.39 -0.01 1.39 16 35 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.42 11.31 6.34 -92.71 -0.59 10.73 16 37 H 0.17 6.31 5.93 -2.91 -0.02 6.29 16 38 H 0.21 5.72 8.06 -2.91 -0.02 5.69 16 39 H 0.08 3.25 7.50 -2.39 -0.02 3.23 16 40 H 0.05 2.07 7.20 -2.39 -0.02 2.05 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.09 1.88 7.11 -2.39 -0.02 1.87 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.04 0.81 6.11 -2.39 -0.01 0.80 16 Total: -1.00 -77.25 367.13 2.87 -74.38 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.35 Total: 30.00 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 7.64 Total: 11.38 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -5.50 Total: -129.57 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -1.51 Total: -28.67 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.88 Total: 42.48 kcal Total: -77.25 2.87 -74.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173367453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.646 kcal (2) G-P(sol) polarization free energy of solvation -77.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds