Wall clock time and date at job start Tue Mar 31 2020 12:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47191 * 2 1 4 4 H 1.09002 * 109.50917 * 55.09765 * 3 2 1 5 5 C 1.53703 * 109.48426 * 175.36360 * 3 2 1 6 6 N 1.47153 * 108.16080 * 172.40006 * 5 3 2 7 7 C 1.34786 * 120.98138 * 129.43139 * 6 5 3 8 8 O 1.21591 * 119.99787 * 4.70667 * 7 6 5 9 9 N 1.34773 * 119.99685 * 184.70668 * 7 6 5 10 10 C 1.40203 * 119.99689 * 174.78223 * 9 7 6 11 11 C 1.40404 * 125.97189 * 359.97438 * 10 9 7 12 12 C 1.35244 * 107.86659 * 180.02562 * 11 10 9 13 13 N 1.34966 * 107.85826 * 0.02562 * 12 11 10 14 14 C 1.46497 * 125.97323 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46807 * 125.00613 * 14 13 12 16 16 H 1.07997 * 120.00238 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99601 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00494 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99857 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47129 * 89.99892 * 19 17 15 21 21 H 1.48501 * 109.47295 * 210.00049 * 19 17 15 22 22 H 1.48498 * 109.47274 * 330.00259 * 19 17 15 23 23 N 1.31205 * 125.97297 * 180.33155 * 10 9 7 24 24 C 1.47147 * 118.03889 * 309.15840 * 6 5 3 25 25 C 1.53298 * 108.38064 * 50.78352 * 24 6 5 26 26 H 1.09001 * 109.51054 * 67.67787 * 25 24 6 27 27 C 1.53001 * 109.50980 * 187.77652 * 25 24 6 28 28 O 1.42961 * 109.22786 * 307.69981 * 25 24 6 29 29 H 1.09002 * 109.47193 * 59.99688 * 1 2 3 30 30 H 1.09005 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47437 * 299.99675 * 1 2 3 32 32 H 1.09000 * 109.46709 * 240.00329 * 2 1 3 33 33 H 1.08994 * 109.46918 * 120.00181 * 2 1 3 34 34 H 1.08998 * 109.84350 * 52.71809 * 5 3 2 35 35 H 1.09004 * 109.74533 * 292.02488 * 5 3 2 36 36 H 0.96998 * 120.00261 * 354.78376 * 9 7 6 37 37 H 1.07999 * 126.06530 * 359.97139 * 11 10 9 38 38 H 1.07998 * 126.07046 * 180.02562 * 12 11 10 39 39 H 1.09000 * 109.47032 * 244.99790 * 14 13 12 40 40 H 1.08992 * 109.47350 * 5.00465 * 14 13 12 41 41 H 0.97003 * 120.00229 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.68904 * 170.50740 * 24 6 5 43 43 H 1.09000 * 109.67794 * 291.06635 * 24 6 5 44 44 H 1.09004 * 109.47447 * 60.00258 * 27 25 24 45 45 H 1.09008 * 109.47167 * 180.02562 * 27 25 24 46 46 H 1.09003 * 109.47255 * 300.00262 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9817 0.8426 5 6 3.5726 1.4444 0.1171 6 7 4.0451 2.8255 -0.0696 7 6 4.8935 3.3935 0.8104 8 8 5.3468 2.7372 1.7281 9 7 5.2393 4.6888 0.6730 10 6 6.0333 5.3095 1.6476 11 6 6.5349 4.7041 2.8109 12 6 7.2497 5.6324 3.4866 13 7 7.2047 6.7828 2.7822 14 6 7.8467 8.0457 3.1550 15 6 8.7329 8.5105 2.0281 16 1 8.8105 7.9236 1.1249 17 6 9.4446 9.6850 2.1504 18 7 9.3497 10.4000 3.2501 19 14 10.5436 10.2608 0.7540 20 1 9.7611 11.1216 -0.1691 21 1 11.6826 11.0362 1.3079 22 1 11.0608 9.0825 0.0129 23 7 6.4322 6.5594 1.6353 24 6 3.5690 3.5660 -1.2487 25 6 2.0407 3.4588 -1.3021 26 1 1.6079 4.0060 -0.4647 27 6 1.5325 4.0521 -2.6177 28 8 1.6622 2.0826 -1.2212 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.0032 0.8021 -0.6510 35 1 3.8670 1.0859 1.1035 36 1 4.9388 5.1917 -0.1001 37 1 6.3771 3.6794 3.1130 38 1 7.7650 5.4801 4.4234 39 1 7.0824 8.7981 3.3501 40 1 8.4475 7.8970 4.0521 41 1 9.8507 11.2262 3.3363 42 1 3.8609 4.6129 -1.1673 43 1 3.9991 3.1335 -2.1520 44 1 1.9644 3.5032 -3.4546 45 1 0.4458 3.9759 -2.6548 46 1 1.8254 5.1001 -2.6807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173367467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:58 Heat of formation + Delta-G solvation = 14.263696 kcal Electronic energy + Delta-G solvation = -27238.439154 eV Core-core repulsion = 23358.548743 eV Total energy + Delta-G solvation = -3879.890411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04069 -40.19315 -38.82538 -35.34179 -34.91783 -34.54311 -33.31056 -31.80942 -30.96034 -29.34001 -28.70646 -26.88340 -26.44139 -24.37495 -22.95261 -22.09014 -21.58195 -20.93630 -20.26973 -19.30048 -18.11374 -17.20166 -16.72311 -16.57158 -16.05466 -15.85409 -15.49428 -15.02713 -14.81695 -14.52694 -14.24931 -14.19484 -13.99060 -13.62107 -13.37501 -12.80531 -12.75129 -12.66164 -12.48203 -12.28375 -12.21336 -12.09016 -11.79483 -11.66481 -11.37485 -11.29478 -11.05501 -10.91063 -10.84659 -10.47233 -10.33995 -10.25777 -10.09498 -9.70608 -9.49442 -8.79975 -8.63322 -8.11316 -7.42507 -6.24439 -4.29451 2.19954 2.62488 3.05994 3.23359 3.23645 3.29116 3.30650 3.36100 3.79618 4.03404 4.21945 4.32542 4.47429 4.52318 4.65165 4.69794 4.80076 4.94640 4.98936 5.10614 5.13370 5.24550 5.28649 5.35758 5.45081 5.48992 5.56071 5.60439 5.62672 5.76391 5.79587 5.81828 5.97436 6.01012 6.28474 6.52797 6.57106 6.79775 6.84929 6.94984 7.07643 7.46357 7.68383 7.76734 7.92054 8.06071 8.50048 8.64862 8.80463 9.36107 10.84207 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.002467 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.981011 B =11349.065461 C =12127.990271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.078 3.922 4 H 0.064 0.936 5 C 0.103 3.897 6 N -0.632 5.632 7 C 0.719 3.281 8 O -0.563 6.563 9 N -0.643 5.643 10 C 0.274 3.726 11 C -0.286 4.286 12 C 0.052 3.948 13 N -0.320 5.320 14 C 0.259 3.741 15 C -0.528 4.528 16 H 0.069 0.931 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 N -0.307 5.307 24 C 0.079 3.921 25 C 0.076 3.924 26 H 0.065 0.935 27 C -0.144 4.144 28 O -0.371 6.371 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.405 0.595 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.267 0.733 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.979 -17.712 -8.331 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.019 3.981 4 H 0.082 0.918 5 C -0.020 4.020 6 N -0.371 5.371 7 C 0.420 3.580 8 O -0.438 6.438 9 N -0.295 5.295 10 C 0.020 3.980 11 C -0.318 4.318 12 C -0.098 4.098 13 N -0.102 5.102 14 C 0.141 3.859 15 C -0.566 4.566 16 H 0.087 0.913 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 N -0.139 5.139 24 C -0.045 4.045 25 C 0.017 3.983 26 H 0.083 0.917 27 C -0.202 4.202 28 O -0.290 6.290 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.242 0.758 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.630 -16.885 -8.287 25.106 hybrid contribution 0.722 0.223 -0.491 0.902 sum -15.907 -16.663 -8.779 24.653 Atomic orbital electron populations 1.21699 0.94931 1.01634 1.02343 1.21500 0.96974 0.93544 1.03162 1.22667 0.93226 0.94738 0.87476 0.91756 1.22295 0.93770 0.81486 1.04426 1.47237 1.49162 1.15187 1.25518 1.15479 0.79383 0.80988 0.82178 1.90862 1.57099 1.61974 1.33877 1.41547 1.53127 1.10037 1.24796 1.18789 0.96610 0.91819 0.90739 1.21487 1.10542 1.02325 0.97401 1.22553 1.01290 0.86844 0.99127 1.49059 1.36327 1.11007 1.13786 1.19737 0.92512 0.76521 0.97114 1.21256 1.25846 1.07528 1.01980 0.91330 1.24947 0.96816 0.95974 0.96385 1.69917 1.42065 1.15192 1.26187 0.86326 0.79742 0.78778 0.81634 1.20350 1.20980 1.19739 1.77311 1.15503 1.13543 1.07498 1.22455 0.95493 0.97457 0.89073 1.22442 0.92869 0.83487 0.99505 0.91731 1.21748 1.02303 1.00724 0.95420 1.87949 1.79685 1.23259 1.38148 0.91929 0.92621 0.92874 0.90791 0.90135 0.90735 0.87744 0.75800 0.82273 0.81477 0.93755 0.92512 0.92334 0.89398 0.90067 0.91437 0.91330 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.81 37.16 0.36 -0.58 16 2 C -0.11 -0.75 5.65 -26.73 -0.15 -0.91 16 3 C 0.08 0.66 2.79 -26.36 -0.07 0.59 16 4 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 5 C 0.10 1.02 5.94 -3.32 -0.02 1.00 16 6 N -0.63 -7.33 3.01 -177.75 -0.54 -7.87 16 7 C 0.72 11.18 8.28 -86.91 -0.72 10.46 16 8 O -0.56 -10.38 12.99 5.29 0.07 -10.31 16 9 N -0.64 -10.45 5.37 -15.50 -0.08 -10.54 16 10 C 0.27 5.62 8.11 -154.36 -1.25 4.37 16 11 C -0.29 -5.80 9.61 -39.83 -0.38 -6.18 16 12 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 13 N -0.32 -7.49 3.66 -62.56 -0.23 -7.72 16 14 C 0.26 6.59 6.26 -5.19 -0.03 6.56 16 15 C -0.53 -14.71 9.24 -34.44 -0.32 -15.03 16 16 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.90 -25.33 13.29 55.43 0.74 -24.59 16 19 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 N -0.31 -7.13 12.43 31.44 0.39 -6.74 16 24 C 0.08 0.69 5.92 -3.53 -0.02 0.67 16 25 C 0.08 0.61 3.40 -26.58 -0.09 0.52 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 C -0.14 -0.88 9.57 37.16 0.36 -0.53 16 28 O -0.37 -3.38 9.56 -35.23 -0.34 -3.71 16 29 H 0.06 0.45 7.82 -51.93 -0.41 0.04 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 1.12 7.12 -51.93 -0.37 0.75 16 36 H 0.40 5.46 6.34 -40.82 -0.26 5.20 16 37 H 0.16 3.16 5.93 -52.49 -0.31 2.85 16 38 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 39 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 41 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.09 0.70 5.66 -51.93 -0.29 0.41 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -32.92 375.44 -9.09 -42.00 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.10 Total: 4.07 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -2.63 Total: 3.40 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.28 Total: -57.46 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.27 Total: -14.03 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.92 -9.09 -42.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173367467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.265 kcal (2) G-P(sol) polarization free energy of solvation -32.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds