Wall clock time and date at job start Tue Mar 31 2020 12:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47191 * 2 1 4 4 H 1.09002 * 109.50917 * 55.09765 * 3 2 1 5 5 C 1.53703 * 109.48426 * 175.36360 * 3 2 1 6 6 N 1.47153 * 108.16080 * 172.40006 * 5 3 2 7 7 C 1.34786 * 120.98138 * 129.43139 * 6 5 3 8 8 O 1.21591 * 119.99787 * 4.70667 * 7 6 5 9 9 N 1.34773 * 119.99685 * 184.70668 * 7 6 5 10 10 C 1.40203 * 119.99689 * 174.78223 * 9 7 6 11 11 C 1.40404 * 125.97189 * 359.97438 * 10 9 7 12 12 C 1.35244 * 107.86659 * 180.02562 * 11 10 9 13 13 N 1.34966 * 107.85826 * 0.02562 * 12 11 10 14 14 C 1.46497 * 125.97323 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46807 * 125.00613 * 14 13 12 16 16 H 1.07997 * 120.00238 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99601 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00494 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99857 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47129 * 89.99892 * 19 17 15 21 21 H 1.48501 * 109.47295 * 210.00049 * 19 17 15 22 22 H 1.48498 * 109.47274 * 330.00259 * 19 17 15 23 23 N 1.31205 * 125.97297 * 180.33155 * 10 9 7 24 24 C 1.47147 * 118.03889 * 309.15840 * 6 5 3 25 25 C 1.53298 * 108.38064 * 50.78352 * 24 6 5 26 26 H 1.09001 * 109.51054 * 67.67787 * 25 24 6 27 27 C 1.53001 * 109.50980 * 187.77652 * 25 24 6 28 28 O 1.42961 * 109.22786 * 307.69981 * 25 24 6 29 29 H 1.09002 * 109.47193 * 59.99688 * 1 2 3 30 30 H 1.09005 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47437 * 299.99675 * 1 2 3 32 32 H 1.09000 * 109.46709 * 240.00329 * 2 1 3 33 33 H 1.08994 * 109.46918 * 120.00181 * 2 1 3 34 34 H 1.08998 * 109.84350 * 52.71809 * 5 3 2 35 35 H 1.09004 * 109.74533 * 292.02488 * 5 3 2 36 36 H 0.96998 * 120.00261 * 354.78376 * 9 7 6 37 37 H 1.07999 * 126.06530 * 359.97139 * 11 10 9 38 38 H 1.07998 * 126.07046 * 180.02562 * 12 11 10 39 39 H 1.09000 * 109.47032 * 244.99790 * 14 13 12 40 40 H 1.08992 * 109.47350 * 5.00465 * 14 13 12 41 41 H 0.97003 * 120.00229 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.68904 * 170.50740 * 24 6 5 43 43 H 1.09000 * 109.67794 * 291.06635 * 24 6 5 44 44 H 1.09004 * 109.47447 * 60.00258 * 27 25 24 45 45 H 1.09008 * 109.47167 * 180.02562 * 27 25 24 46 46 H 1.09003 * 109.47255 * 300.00262 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9817 0.8426 5 6 3.5726 1.4444 0.1171 6 7 4.0451 2.8255 -0.0696 7 6 4.8935 3.3935 0.8104 8 8 5.3468 2.7372 1.7281 9 7 5.2393 4.6888 0.6730 10 6 6.0333 5.3095 1.6476 11 6 6.5349 4.7041 2.8109 12 6 7.2497 5.6324 3.4866 13 7 7.2047 6.7828 2.7822 14 6 7.8467 8.0457 3.1550 15 6 8.7329 8.5105 2.0281 16 1 8.8105 7.9236 1.1249 17 6 9.4446 9.6850 2.1504 18 7 9.3497 10.4000 3.2501 19 14 10.5436 10.2608 0.7540 20 1 9.7611 11.1216 -0.1691 21 1 11.6826 11.0362 1.3079 22 1 11.0608 9.0825 0.0129 23 7 6.4322 6.5594 1.6353 24 6 3.5690 3.5660 -1.2487 25 6 2.0407 3.4588 -1.3021 26 1 1.6079 4.0060 -0.4647 27 6 1.5325 4.0521 -2.6177 28 8 1.6622 2.0826 -1.2212 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.0032 0.8021 -0.6510 35 1 3.8670 1.0859 1.1035 36 1 4.9388 5.1917 -0.1001 37 1 6.3771 3.6794 3.1130 38 1 7.7650 5.4801 4.4234 39 1 7.0824 8.7981 3.3501 40 1 8.4475 7.8970 4.0521 41 1 9.8507 11.2262 3.3363 42 1 3.8609 4.6129 -1.1673 43 1 3.9991 3.1335 -2.1520 44 1 1.9644 3.5032 -3.4546 45 1 0.4458 3.9759 -2.6548 46 1 1.8254 5.1001 -2.6807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173367467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:57 Heat of formation + Delta-G solvation = -5.703613 kcal Electronic energy + Delta-G solvation = -27239.305002 eV Core-core repulsion = 23358.548743 eV Total energy + Delta-G solvation = -3880.756259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.37024 -41.47362 -39.85395 -36.42286 -36.12090 -35.42565 -35.18127 -32.74935 -32.41181 -30.97824 -29.59724 -28.47900 -27.43684 -25.44581 -24.58162 -23.00069 -22.45275 -22.03882 -21.71258 -20.59768 -19.27012 -18.69491 -18.23680 -17.79843 -17.28635 -17.01795 -16.63015 -16.31393 -15.96810 -15.75598 -15.65624 -15.29213 -14.88780 -14.56173 -14.51597 -14.23386 -14.03195 -13.87262 -13.68237 -13.31506 -13.14539 -13.03352 -12.90186 -12.76959 -12.74071 -12.30912 -12.29505 -12.09245 -11.96376 -11.83821 -11.70738 -11.56759 -11.41821 -11.17033 -11.06839 -10.72279 -9.84830 -9.65837 -9.06940 -8.32905 -6.46970 0.96518 1.06665 1.38240 1.38750 1.50188 1.62548 1.93583 2.31558 2.34649 2.60108 2.71105 2.98716 3.51981 3.76265 3.83412 3.92764 3.97859 4.03728 4.16738 4.25377 4.35642 4.37470 4.47890 4.59195 4.65699 4.72464 4.80464 4.86631 4.88364 4.92051 4.93630 4.99341 5.02120 5.08904 5.14056 5.25343 5.30382 5.36630 5.46131 5.55028 5.62138 5.82300 5.91943 6.17553 6.27621 6.50331 6.65584 7.05730 7.22862 7.26398 8.74585 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.002467 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.981011 B =11349.065461 C =12127.990271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C 0.082 3.918 4 H 0.055 0.945 5 C 0.101 3.899 6 N -0.624 5.624 7 C 0.716 3.284 8 O -0.595 6.595 9 N -0.637 5.637 10 C 0.283 3.717 11 C -0.293 4.293 12 C 0.058 3.942 13 N -0.344 5.344 14 C 0.273 3.727 15 C -0.547 4.547 16 H 0.052 0.948 17 C 0.018 3.982 18 N -0.920 5.920 19 Si 0.972 3.028 20 H -0.272 1.272 21 H -0.272 1.272 22 H -0.273 1.273 23 N -0.346 5.346 24 C 0.074 3.926 25 C 0.076 3.924 26 H 0.057 0.943 27 C -0.140 4.140 28 O -0.377 6.377 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.417 0.583 37 H 0.166 0.834 38 H 0.202 0.798 39 H 0.022 0.978 40 H 0.059 0.941 41 H 0.273 0.727 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.311 -18.610 -9.666 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C 0.024 3.976 4 H 0.073 0.927 5 C -0.022 4.022 6 N -0.361 5.361 7 C 0.417 3.583 8 O -0.472 6.472 9 N -0.291 5.291 10 C 0.027 3.973 11 C -0.324 4.324 12 C -0.090 4.090 13 N -0.126 5.126 14 C 0.154 3.846 15 C -0.585 4.585 16 H 0.070 0.930 17 C -0.182 4.182 18 N -0.559 5.559 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.198 1.198 23 N -0.177 5.177 24 C -0.048 4.048 25 C 0.017 3.983 26 H 0.075 0.925 27 C -0.197 4.197 28 O -0.296 6.296 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.256 0.744 37 H 0.183 0.817 38 H 0.219 0.781 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.011 -17.808 -9.662 26.455 hybrid contribution 0.725 0.387 -0.095 0.827 sum -16.286 -17.421 -9.757 25.767 Atomic orbital electron populations 1.21675 0.94670 1.02262 1.01770 1.21521 0.97120 0.92249 1.03974 1.22658 0.92048 0.95827 0.87091 0.92726 1.22472 0.94796 0.80571 1.04351 1.47326 1.47674 1.15849 1.25277 1.15636 0.79718 0.80497 0.82479 1.90827 1.58446 1.62537 1.35417 1.41542 1.52597 1.10446 1.24473 1.19073 0.95725 0.91158 0.91313 1.21657 1.10696 1.02538 0.97509 1.23156 1.00496 0.85562 0.99808 1.48835 1.37710 1.11192 1.14846 1.19347 0.91524 0.77167 0.96560 1.21389 1.26918 1.08051 1.02133 0.93006 1.25740 0.97915 0.95831 0.98761 1.69991 1.42682 1.15563 1.27642 0.85346 0.78157 0.78226 0.78668 1.19723 1.19705 1.19818 1.77233 1.17042 1.15068 1.08330 1.22710 0.96134 0.97718 0.88278 1.22520 0.92172 0.83165 1.00447 0.92451 1.21747 1.02373 1.01352 0.94249 1.87960 1.79687 1.23710 1.38245 0.92806 0.91411 0.93123 0.90254 0.89047 0.89412 0.88769 0.74353 0.81692 0.78089 0.95997 0.92287 0.91834 0.88667 0.88578 0.90962 0.91156 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.81 71.98 0.71 -0.95 16 2 C -0.11 -1.28 5.65 30.60 0.17 -1.11 16 3 C 0.08 1.30 2.79 30.83 0.09 1.39 16 4 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 5 C 0.10 1.86 5.94 86.49 0.51 2.38 16 6 N -0.62 -13.75 3.01 -834.54 -2.52 -16.27 16 7 C 0.72 21.80 8.28 179.05 1.48 23.28 16 8 O -0.59 -21.74 12.99 -4.00 -0.05 -21.80 16 9 N -0.64 -20.37 5.37 -321.22 -1.72 -22.10 16 10 C 0.28 11.58 8.11 133.31 1.08 12.66 16 11 C -0.29 -11.76 9.61 22.11 0.21 -11.55 16 12 C 0.06 2.33 11.44 83.52 0.96 3.29 16 13 N -0.34 -16.30 3.66 -351.85 -1.29 -17.59 16 14 C 0.27 14.19 6.26 85.64 0.54 14.72 16 15 C -0.55 -30.91 9.24 25.60 0.24 -30.67 16 16 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 17 C 0.02 0.99 5.46 84.65 0.46 1.45 16 18 N -0.92 -52.09 13.29 21.45 0.28 -51.80 16 19 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 N -0.35 -16.23 12.43 -54.43 -0.68 -16.91 16 24 C 0.07 1.18 5.92 86.36 0.51 1.69 16 25 C 0.08 1.10 3.40 30.69 0.10 1.21 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 C -0.14 -1.42 9.57 71.98 0.69 -0.73 16 28 O -0.38 -6.24 9.56 -148.98 -1.42 -7.67 16 29 H 0.05 0.70 7.82 -2.39 -0.02 0.68 16 30 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.09 1.97 7.12 -2.38 -0.02 1.96 16 36 H 0.42 10.92 6.34 -92.71 -0.59 10.33 16 37 H 0.17 6.48 5.93 -2.91 -0.02 6.46 16 38 H 0.20 6.34 8.06 -2.91 -0.02 6.31 16 39 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 2.99 8.07 -2.39 -0.02 2.98 16 41 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.10 1.36 5.66 -2.39 -0.01 1.35 16 43 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 46 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -70.44 375.44 2.77 -67.66 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.40 Total: 23.79 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 7.75 Total: 17.05 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -5.92 Total: -124.66 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.48 Total: -29.47 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -70.44 2.77 -67.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173367467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.960 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds