Wall clock time and date at job start Tue Mar 31 2020 12:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21596 * 119.99994 * 359.97438 * 14 13 3 16 16 C 1.47526 * 119.99832 * 179.97438 * 14 13 3 17 17 C 1.36590 * 125.77023 * 179.71349 * 16 14 13 18 18 N 1.34816 * 106.83829 * 179.89627 * 17 16 14 19 19 C 1.46505 * 126.59354 * 180.15059 * 18 17 16 20 20 C 1.50693 * 109.47047 * 125.27509 * 19 18 17 21 21 O 1.20763 * 119.99993 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99923 * 180.02562 * 20 19 18 23 23 C 1.53003 * 109.47026 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.46763 * 299.99583 * 22 20 19 25 25 C 1.52995 * 109.47385 * 59.99656 * 22 20 19 26 26 N 1.40206 * 106.81114 * 0.35835 * 18 17 16 27 27 N 1.28765 * 108.37002 * 359.77129 * 26 18 17 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 35 35 H 1.08003 * 126.58071 * 0.03678 * 17 16 14 36 36 H 1.09000 * 109.47071 * 245.27352 * 19 18 17 37 37 H 1.08998 * 109.46873 * 5.27343 * 19 18 17 38 38 H 1.08997 * 109.47012 * 59.99429 * 23 22 20 39 39 H 1.08999 * 109.47069 * 179.97438 * 23 22 20 40 40 H 1.09000 * 109.47285 * 299.99502 * 23 22 20 41 41 H 1.08996 * 109.47319 * 59.99903 * 24 22 20 42 42 H 1.08999 * 109.47220 * 180.02562 * 24 22 20 43 43 H 1.09008 * 109.47235 * 299.99750 * 24 22 20 44 44 H 1.08995 * 109.47221 * 59.99919 * 25 22 20 45 45 H 1.08999 * 109.46885 * 180.02562 * 25 22 20 46 46 H 1.08999 * 109.47249 * 300.00076 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 6 0.0450 3.3243 -2.6275 17 6 -1.1547 3.9287 -2.8742 18 7 -1.1008 4.4036 -4.1348 19 6 -2.1585 5.1324 -4.8395 20 6 -1.6133 6.4422 -5.3475 21 8 -0.4604 6.7368 -5.1418 22 6 -2.5072 7.3849 -6.1114 23 6 -1.7133 8.6310 -6.5087 24 6 -3.0266 6.6875 -7.3703 25 6 -3.6893 7.7934 -5.2302 26 7 0.1602 4.0618 -4.6434 27 7 0.8081 3.4273 -3.7291 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0610 2.9499 34 1 2.2720 2.1231 -1.9978 35 1 -1.9861 4.0124 -2.1899 36 1 -2.5128 4.5358 -5.6801 37 1 -2.9855 5.3237 -4.1557 38 1 -0.8709 8.3402 -7.1363 39 1 -2.3596 9.3126 -7.0616 40 1 -1.3436 9.1276 -5.6117 41 1 -3.5922 5.8000 -7.0869 42 1 -3.6727 7.3695 -7.9230 43 1 -2.1843 6.3965 -7.9982 44 1 -3.3193 8.2902 -4.3333 45 1 -4.3360 8.4749 -5.7829 46 1 -4.2550 6.9059 -4.9467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183793985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:48 Heat of formation + Delta-G solvation = 12.927122 kcal Electronic energy + Delta-G solvation = -27136.778790 eV Core-core repulsion = 23256.830420 eV Total energy + Delta-G solvation = -3879.948369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.12329 -40.44543 -38.65606 -36.33186 -35.00087 -34.68478 -32.28616 -31.14590 -30.53765 -29.23675 -27.98645 -27.50726 -26.87217 -24.01458 -23.64804 -22.57461 -21.87536 -20.38972 -19.33538 -18.95073 -18.09983 -17.00016 -16.69053 -15.96298 -15.61263 -15.43769 -15.26697 -15.15551 -14.56792 -14.44113 -14.30492 -14.20327 -14.01285 -13.17764 -12.97422 -12.92546 -12.81915 -12.62308 -12.59011 -12.28461 -11.98098 -11.95956 -11.55046 -11.52535 -11.45154 -11.20554 -11.12228 -10.89625 -10.78710 -10.72463 -10.26401 -10.11988 -9.84629 -9.58480 -9.20578 -9.05483 -8.97857 -8.43096 -7.75404 -6.05771 -4.14004 1.21571 1.38254 1.87517 2.10238 3.18397 3.31139 3.37369 3.40864 3.91277 3.98609 4.05288 4.15536 4.26059 4.29633 4.39866 4.46080 4.48999 4.76003 4.93622 5.00670 5.04559 5.11946 5.23371 5.25506 5.31441 5.32352 5.34163 5.35207 5.52179 5.61781 5.75193 6.07960 6.27911 6.44403 6.51735 6.71084 6.93839 7.11125 7.24009 7.41637 7.49219 7.68989 7.79643 7.95550 8.11949 8.23846 8.75132 8.83860 9.15943 9.52707 10.99743 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.002459 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.060949 B =11384.001410 C =12014.014797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.688 5.688 14 C 0.586 3.414 15 O -0.549 6.549 16 C -0.083 4.083 17 C 0.080 3.920 18 N -0.367 5.367 19 C 0.073 3.927 20 C 0.347 3.653 21 O -0.409 6.409 22 C -0.107 4.107 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.144 4.144 26 N -0.052 5.052 27 N -0.203 5.203 28 H 0.022 0.978 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.032 0.968 33 H 0.264 0.736 34 H 0.397 0.603 35 H 0.203 0.797 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.123 12.943 -17.796 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.334 5.334 14 C 0.369 3.631 15 O -0.428 6.428 16 C -0.221 4.221 17 C -0.075 4.075 18 N -0.153 5.153 19 C -0.050 4.050 20 C 0.217 3.783 21 O -0.277 6.277 22 C -0.108 4.108 23 C -0.193 4.193 24 C -0.200 4.200 25 C -0.201 4.201 26 N -0.032 5.032 27 N -0.077 5.077 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.230 0.770 35 H 0.220 0.780 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.063 13.040 -18.010 28.028 hybrid contribution 0.349 -0.008 0.490 0.602 sum -16.714 13.032 -17.520 27.498 Atomic orbital electron populations 1.21842 0.98397 0.98034 1.01178 1.21940 0.92612 0.99702 1.02427 1.18864 0.94389 0.89243 0.80692 0.93078 1.21258 0.90678 1.38773 1.06288 0.91917 1.24871 0.98597 0.94806 0.95379 1.69894 1.35075 1.37827 1.09347 0.86451 0.84920 0.77545 0.78230 1.20606 1.21126 1.19778 1.46372 1.14025 1.54224 1.18814 1.16763 0.83362 0.78869 0.84145 1.90765 1.51981 1.61253 1.38777 1.21979 0.93036 1.10153 0.96979 1.23322 1.00835 0.96517 0.86804 1.50013 1.14308 1.40048 1.10920 1.22425 0.88947 0.93493 1.00093 1.24703 0.89192 0.86822 0.77581 1.90538 1.18401 1.73342 1.45447 1.21149 0.96597 0.96244 0.96844 1.21738 0.99807 0.95436 1.02296 1.21900 1.01715 1.00735 0.95656 1.21909 0.96247 1.02340 0.99592 1.82019 0.87743 1.15425 1.18040 1.74675 1.24439 1.09540 0.99068 0.95846 0.94337 0.93088 0.88151 0.94894 0.92635 0.76955 0.78012 0.85352 0.84694 0.91782 0.91596 0.91892 0.91684 0.90892 0.91730 0.91815 0.90815 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 7.00 2.24 -69.08 -0.15 6.85 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.55 8.73 -34.44 -0.30 -14.85 16 6 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.06 11.29 55.43 0.63 -24.44 16 9 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.69 -15.60 5.02 -55.97 -0.28 -15.88 16 14 C 0.59 12.47 6.39 -12.47 -0.08 12.39 16 15 O -0.55 -12.66 14.00 5.28 0.07 -12.59 16 16 C -0.08 -1.48 6.99 -83.55 -0.58 -2.07 16 17 C 0.08 1.08 11.27 -16.84 -0.19 0.89 16 18 N -0.37 -4.53 3.41 -62.24 -0.21 -4.74 16 19 C 0.07 0.49 6.29 -5.19 -0.03 0.45 16 20 C 0.35 2.88 6.00 -29.04 -0.17 2.71 16 21 O -0.41 -5.49 15.36 6.00 0.09 -5.40 16 22 C -0.11 -0.54 0.87 -155.66 -0.14 -0.67 16 23 C -0.14 -0.83 7.76 37.16 0.29 -0.55 16 24 C -0.14 -0.47 8.26 37.16 0.31 -0.16 16 25 C -0.14 -0.44 8.25 37.16 0.31 -0.14 16 26 N -0.05 -0.86 12.89 60.35 0.78 -0.08 16 27 N -0.20 -3.74 12.04 32.85 0.40 -3.35 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 30 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 31 H 0.10 2.73 5.95 -51.93 -0.31 2.42 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.40 8.55 8.23 -40.82 -0.34 8.21 16 35 H 0.20 2.00 8.06 -52.48 -0.42 1.58 16 36 H 0.13 0.52 7.38 -51.93 -0.38 0.13 16 37 H 0.14 0.37 7.32 -51.93 -0.38 -0.01 16 38 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 41 H 0.06 0.11 7.28 -51.93 -0.38 -0.26 16 42 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 44 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.06 0.09 7.28 -51.93 -0.38 -0.29 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -35.12 378.97 -5.53 -40.65 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.02 Total: 3.40 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.67 Total: 0.49 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 1.31 Total: -48.49 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.17 Total: -17.98 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.12 -5.53 -40.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183793985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.578 kcal (2) G-P(sol) polarization free energy of solvation -35.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds