Wall clock time and date at job start Tue Mar 31 2020 12:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21596 * 119.99994 * 359.97438 * 14 13 3 16 16 C 1.47526 * 119.99832 * 179.97438 * 14 13 3 17 17 C 1.36590 * 125.77023 * 179.71349 * 16 14 13 18 18 N 1.34816 * 106.83829 * 179.89627 * 17 16 14 19 19 C 1.46505 * 126.59354 * 180.15059 * 18 17 16 20 20 C 1.50693 * 109.47047 * 125.27509 * 19 18 17 21 21 O 1.20763 * 119.99993 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99923 * 180.02562 * 20 19 18 23 23 C 1.53003 * 109.47026 * 179.97438 * 22 20 19 24 24 C 1.52998 * 109.46763 * 299.99583 * 22 20 19 25 25 C 1.52995 * 109.47385 * 59.99656 * 22 20 19 26 26 N 1.40206 * 106.81114 * 0.35835 * 18 17 16 27 27 N 1.28765 * 108.37002 * 359.77129 * 26 18 17 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 35 35 H 1.08003 * 126.58071 * 0.03678 * 17 16 14 36 36 H 1.09000 * 109.47071 * 245.27352 * 19 18 17 37 37 H 1.08998 * 109.46873 * 5.27343 * 19 18 17 38 38 H 1.08997 * 109.47012 * 59.99429 * 23 22 20 39 39 H 1.08999 * 109.47069 * 179.97438 * 23 22 20 40 40 H 1.09000 * 109.47285 * 299.99502 * 23 22 20 41 41 H 1.08996 * 109.47319 * 59.99903 * 24 22 20 42 42 H 1.08999 * 109.47220 * 180.02562 * 24 22 20 43 43 H 1.09008 * 109.47235 * 299.99750 * 24 22 20 44 44 H 1.08995 * 109.47221 * 59.99919 * 25 22 20 45 45 H 1.08999 * 109.46885 * 180.02562 * 25 22 20 46 46 H 1.08999 * 109.47249 * 300.00076 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 6 0.0450 3.3243 -2.6275 17 6 -1.1547 3.9287 -2.8742 18 7 -1.1008 4.4036 -4.1348 19 6 -2.1585 5.1324 -4.8395 20 6 -1.6133 6.4422 -5.3475 21 8 -0.4604 6.7368 -5.1418 22 6 -2.5072 7.3849 -6.1114 23 6 -1.7133 8.6310 -6.5087 24 6 -3.0266 6.6875 -7.3703 25 6 -3.6893 7.7934 -5.2302 26 7 0.1602 4.0618 -4.6434 27 7 0.8081 3.4273 -3.7291 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0610 2.9499 34 1 2.2720 2.1231 -1.9978 35 1 -1.9861 4.0124 -2.1899 36 1 -2.5128 4.5358 -5.6801 37 1 -2.9855 5.3237 -4.1557 38 1 -0.8709 8.3402 -7.1363 39 1 -2.3596 9.3126 -7.0616 40 1 -1.3436 9.1276 -5.6117 41 1 -3.5922 5.8000 -7.0869 42 1 -3.6727 7.3695 -7.9230 43 1 -2.1843 6.3965 -7.9982 44 1 -3.3193 8.2902 -4.3333 45 1 -4.3360 8.4749 -5.7829 46 1 -4.2550 6.9059 -4.9467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183793985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:47 Heat of formation + Delta-G solvation = -12.278779 kcal Electronic energy + Delta-G solvation = -27137.871800 eV Core-core repulsion = 23256.830420 eV Total energy + Delta-G solvation = -3881.041379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.27296 -41.15799 -40.36851 -36.93081 -36.82869 -35.68650 -34.26204 -32.90073 -31.84888 -30.18362 -28.87317 -28.19488 -27.90934 -25.42482 -24.75537 -24.24856 -22.81664 -21.98014 -21.10480 -19.84553 -19.30513 -18.23399 -17.62441 -17.27624 -17.13784 -16.64602 -16.38946 -16.24041 -16.07433 -15.72148 -15.35469 -14.95392 -14.80504 -14.63936 -14.56958 -13.86813 -13.62464 -13.46665 -13.35193 -13.17943 -13.11882 -13.05782 -13.00838 -12.89325 -12.68758 -12.59223 -12.31655 -12.15901 -12.04813 -11.91325 -11.85852 -11.68500 -11.56448 -11.05802 -10.93930 -10.57987 -10.52154 -10.28254 -9.62434 -8.15975 -6.32225 0.13088 0.71046 0.77787 0.99561 1.44311 1.44366 1.55605 2.33241 2.41260 2.53803 2.63867 3.13021 3.25751 3.48570 3.63095 3.83823 3.89700 3.93967 4.00511 4.08140 4.30685 4.40190 4.53551 4.61278 4.68986 4.70728 4.73777 4.81276 4.85779 4.96122 4.97122 5.02717 5.10134 5.22947 5.27422 5.28970 5.39122 5.41699 5.46499 5.56094 5.61170 5.80972 5.90890 6.17655 6.34339 6.73412 6.78159 7.03687 7.30955 7.48034 8.89407 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.002459 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.060949 B =11384.001410 C =12014.014797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.008 0.992 5 C -0.552 4.552 6 H 0.063 0.937 7 C 0.020 3.980 8 N -0.910 5.910 9 Si 0.968 3.032 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.267 1.267 13 N -0.694 5.694 14 C 0.589 3.411 15 O -0.572 6.572 16 C -0.119 4.119 17 C 0.110 3.890 18 N -0.349 5.349 19 C 0.056 3.944 20 C 0.349 3.651 21 O -0.473 6.473 22 C -0.100 4.100 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.143 4.143 26 N -0.074 5.074 27 N -0.232 5.232 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.401 0.599 35 H 0.244 0.756 36 H 0.166 0.834 37 H 0.187 0.813 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.734 13.321 -19.254 31.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.026 0.974 5 C -0.590 4.590 6 H 0.081 0.919 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.792 3.208 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.191 1.191 13 N -0.341 5.341 14 C 0.374 3.626 15 O -0.452 6.452 16 C -0.259 4.259 17 C -0.046 4.046 18 N -0.134 5.134 19 C -0.063 4.063 20 C 0.224 3.776 21 O -0.345 6.345 22 C -0.102 4.102 23 C -0.195 4.195 24 C -0.199 4.199 25 C -0.200 4.200 26 N -0.055 5.055 27 N -0.105 5.105 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.235 0.765 35 H 0.260 0.740 36 H 0.183 0.817 37 H 0.204 0.796 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.714 13.443 -19.531 30.835 hybrid contribution 1.013 -0.004 0.864 1.332 sum -18.701 13.439 -18.667 29.644 Atomic orbital electron populations 1.21674 0.96464 0.99392 1.00481 1.21787 0.94286 0.98707 1.01260 1.18486 0.93673 0.89493 0.80808 0.97370 1.21549 0.91592 1.39154 1.06701 0.91921 1.25691 1.03158 0.94267 0.94930 1.70020 1.36900 1.38175 1.09743 0.85416 0.79336 0.77627 0.78389 1.20352 1.20390 1.19104 1.46198 1.15088 1.54993 1.17834 1.17093 0.82340 0.78024 0.85146 1.90736 1.52358 1.62050 1.40037 1.21614 0.95238 1.13021 0.96010 1.23825 0.99997 0.93631 0.87180 1.50312 1.13914 1.38612 1.10572 1.23227 0.88284 0.92503 1.02301 1.25428 0.88563 0.87475 0.76169 1.90546 1.21020 1.74801 1.48168 1.21177 0.96442 0.94851 0.97697 1.21763 0.99824 0.96646 1.01294 1.21950 1.01583 1.01949 0.94458 1.21964 0.95434 1.03847 0.98764 1.81918 0.89655 1.15787 1.18121 1.74640 1.25717 1.10617 0.99575 0.93362 0.93931 0.94755 0.90544 0.94582 0.92434 0.76476 0.73972 0.81708 0.79566 0.93892 0.89499 0.93820 0.89179 0.89383 0.93272 0.93004 0.89446 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.12 -6.18 5.45 30.60 0.17 -6.01 16 3 C 0.28 14.99 2.24 44.25 0.10 15.09 16 4 H 0.01 0.52 7.58 -2.39 -0.02 0.50 16 5 C -0.55 -31.00 8.73 25.60 0.22 -30.78 16 6 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 1.11 5.29 84.66 0.45 1.56 16 8 N -0.91 -52.77 11.29 21.45 0.24 -52.53 16 9 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 N -0.69 -32.49 5.02 -449.26 -2.25 -34.75 16 14 C 0.59 25.41 6.39 86.69 0.55 25.97 16 15 O -0.57 -26.61 14.00 -4.02 -0.06 -26.66 16 16 C -0.12 -4.23 6.99 40.82 0.29 -3.95 16 17 C 0.11 2.70 11.27 83.85 0.95 3.64 16 18 N -0.35 -7.70 3.41 -350.83 -1.20 -8.90 16 19 C 0.06 0.51 6.29 85.63 0.54 1.05 16 20 C 0.35 5.11 6.00 29.10 0.17 5.28 16 21 O -0.47 -12.78 15.36 -1.46 -0.02 -12.80 16 22 C -0.10 -0.75 0.87 -52.93 -0.05 -0.80 16 23 C -0.14 -1.63 7.76 71.98 0.56 -1.07 16 24 C -0.14 -0.45 8.26 71.98 0.59 0.15 16 25 C -0.14 -0.33 8.25 71.98 0.59 0.27 16 26 N -0.07 -2.41 12.89 37.02 0.48 -1.93 16 27 N -0.23 -8.61 12.04 -49.99 -0.60 -9.21 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 30 H 0.03 1.63 7.84 -2.38 -0.02 1.61 16 31 H 0.08 4.27 5.95 -2.39 -0.01 4.26 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.40 17.93 8.23 -92.71 -0.76 17.17 16 35 H 0.24 3.74 8.06 -2.91 -0.02 3.71 16 36 H 0.17 0.44 7.38 -2.39 -0.02 0.42 16 37 H 0.19 -0.18 7.32 -2.39 -0.02 -0.19 16 38 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 41 H 0.09 -0.15 7.28 -2.39 -0.02 -0.17 16 42 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 44 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.09 -0.28 7.28 -2.39 -0.02 -0.30 16 Total: -1.00 -82.13 378.97 4.60 -77.53 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.23 Total: 17.78 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 5.75 Total: 5.46 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -3.33 Total: -107.32 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.08 Total: -39.46 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -82.13 4.60 -77.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183793985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.252 kcal (2) G-P(sol) polarization free energy of solvation -82.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds