Wall clock time and date at job start Tue Mar 31 2020 12:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47589 * 2 1 4 4 H 1.08998 * 109.47247 * 305.00359 * 3 2 1 5 5 C 1.50704 * 109.47323 * 184.99800 * 3 2 1 6 6 H 1.08000 * 120.00160 * 240.00271 * 5 3 2 7 7 C 1.37871 * 119.99510 * 60.00161 * 5 3 2 8 8 N 1.31511 * 120.00512 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99670 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47100 * 60.00053 * 9 7 5 11 11 H 1.48506 * 109.46944 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47056 * 300.00046 * 9 7 5 13 13 N 1.46503 * 109.47122 * 65.00076 * 3 2 1 14 14 C 1.34778 * 119.99896 * 275.00265 * 13 3 2 15 15 O 1.21593 * 119.99956 * 359.97438 * 14 13 3 16 16 C 1.47525 * 119.99831 * 179.97438 * 14 13 3 17 17 C 1.36601 * 125.76849 * 179.97438 * 16 14 13 18 18 N 1.34811 * 106.83811 * 179.97438 * 17 16 14 19 19 C 1.46495 * 126.59602 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47546 * 124.97404 * 19 18 17 21 21 O 1.20754 * 119.99947 * 0.02562 * 20 19 18 22 22 C 1.50700 * 120.00126 * 179.97438 * 20 19 18 23 23 C 1.52995 * 109.47265 * 179.97438 * 22 20 19 24 24 C 1.53001 * 109.47586 * 300.00420 * 22 20 19 25 25 C 1.53008 * 109.47018 * 60.00248 * 22 20 19 26 26 N 1.40215 * 106.81108 * 0.02562 * 18 17 16 27 27 N 1.28756 * 108.36742 * 359.97438 * 26 18 17 28 28 H 1.08996 * 109.47727 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46813 * 300.00141 * 1 2 3 30 30 H 1.09004 * 109.47040 * 59.99598 * 1 2 3 31 31 H 1.09004 * 109.46813 * 239.99859 * 2 1 3 32 32 H 1.09004 * 109.47040 * 120.00402 * 2 1 3 33 33 H 0.97001 * 120.00182 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00053 * 94.99808 * 13 3 2 35 35 H 1.07993 * 126.58084 * 359.96218 * 17 16 14 36 36 H 1.09002 * 109.47096 * 244.97589 * 19 18 17 37 37 H 1.08998 * 109.46976 * 4.96932 * 19 18 17 38 38 H 1.09008 * 109.47011 * 60.00520 * 23 22 20 39 39 H 1.09001 * 109.47523 * 179.97438 * 23 22 20 40 40 H 1.08997 * 109.47585 * 300.00634 * 23 22 20 41 41 H 1.09004 * 109.46922 * 59.99558 * 24 22 20 42 42 H 1.08993 * 109.47302 * 180.02562 * 24 22 20 43 43 H 1.09006 * 109.46708 * 300.00117 * 24 22 20 44 44 H 1.08997 * 109.46650 * 60.00090 * 25 22 20 45 45 H 1.09001 * 109.46864 * 179.97438 * 25 22 20 46 46 H 1.09000 * 109.47017 * 299.99681 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8886 0.6524 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8810 -1.3817 10 1 6.5975 0.1470 -0.2348 11 1 6.3978 0.2175 -2.6509 12 1 6.4996 2.2812 -1.3821 13 7 1.6526 2.0974 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3411 2.6326 0.4318 16 6 0.0449 3.3235 2.6278 17 6 -1.1528 3.9331 2.8725 18 7 -1.1013 4.4025 4.1352 19 6 -2.1591 5.1306 4.8401 20 6 -2.4785 4.4256 6.1331 21 8 -1.8836 3.4191 6.4349 22 6 -3.5396 4.9773 7.0500 23 6 -3.6658 4.0795 8.2824 24 6 -3.1517 6.3916 7.4863 25 6 -4.8792 5.0207 6.3120 26 7 0.1595 4.0598 4.6441 27 7 0.8073 3.4255 3.7298 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8293 -0.0611 -2.9499 34 1 2.2720 2.1230 1.9978 35 1 -1.9818 4.0221 2.1861 36 1 -1.8220 6.1451 5.0531 37 1 -3.0522 5.1680 4.2163 38 1 -2.7116 4.0483 8.8085 39 1 -4.4330 4.4788 8.9459 40 1 -3.9424 3.0722 7.9714 41 1 -3.0621 7.0310 6.6080 42 1 -3.9189 6.7905 8.1498 43 1 -2.1973 6.3607 8.0120 44 1 -5.1555 4.0132 6.0013 45 1 -5.6467 5.4194 6.9754 46 1 -4.7896 5.6601 5.4338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183794004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:51 Heat of formation + Delta-G solvation = 12.926041 kcal Electronic energy + Delta-G solvation = -27159.971179 eV Core-core repulsion = 23280.022763 eV Total energy + Delta-G solvation = -3879.948416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.12417 -40.45008 -38.65551 -36.33526 -34.99937 -34.68668 -32.28704 -31.14344 -30.53534 -29.23673 -27.98824 -27.50967 -26.87056 -24.01722 -23.64740 -22.57107 -21.87624 -20.38785 -19.33357 -18.95334 -18.10019 -17.01027 -16.67129 -15.99499 -15.60708 -15.45789 -15.27513 -15.08892 -14.52796 -14.52114 -14.30388 -14.20627 -13.99884 -13.23022 -12.98123 -12.88200 -12.79879 -12.61697 -12.59549 -12.28646 -12.02601 -11.92566 -11.55309 -11.52808 -11.44477 -11.19978 -11.12206 -10.92099 -10.76705 -10.72365 -10.27505 -10.11414 -9.84834 -9.58064 -9.20510 -9.05589 -8.97884 -8.43035 -7.75271 -6.05563 -4.14067 1.21577 1.37817 1.87544 2.10300 3.18211 3.32456 3.36562 3.39163 3.91199 3.98679 4.05160 4.15222 4.25799 4.29358 4.39864 4.46009 4.49162 4.75737 4.93504 5.00614 5.04272 5.11725 5.23157 5.25491 5.31006 5.32342 5.33877 5.35215 5.51931 5.61526 5.74637 6.08006 6.27916 6.45581 6.52857 6.72070 6.93380 7.12386 7.24552 7.42158 7.49446 7.69118 7.79705 7.95581 8.11986 8.24020 8.75150 8.83594 9.15938 9.52604 10.99878 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027931 B = 0.002410 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.228084 B =11617.619275 C =12010.180420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.688 5.688 14 C 0.586 3.414 15 O -0.549 6.549 16 C -0.083 4.083 17 C 0.080 3.920 18 N -0.367 5.367 19 C 0.073 3.927 20 C 0.347 3.653 21 O -0.410 6.410 22 C -0.107 4.107 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.144 4.144 26 N -0.052 5.052 27 N -0.203 5.203 28 H 0.022 0.978 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.032 0.968 33 H 0.264 0.736 34 H 0.397 0.603 35 H 0.203 0.797 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.152 12.859 17.807 28.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.334 5.334 14 C 0.369 3.631 15 O -0.428 6.428 16 C -0.222 4.222 17 C -0.075 4.075 18 N -0.153 5.153 19 C -0.050 4.050 20 C 0.217 3.783 21 O -0.278 6.278 22 C -0.108 4.108 23 C -0.193 4.193 24 C -0.200 4.200 25 C -0.201 4.201 26 N -0.032 5.032 27 N -0.077 5.077 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.230 0.770 35 H 0.220 0.780 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.406 12.232 18.297 28.060 hybrid contribution 0.410 0.118 -0.522 0.674 sum -16.996 12.349 17.775 27.520 Atomic orbital electron populations 1.21842 0.98400 0.98063 1.01164 1.21944 0.92615 0.99726 1.02427 1.18857 0.94358 0.89239 0.80676 0.93062 1.21215 0.90667 1.38914 1.06279 0.91970 1.24867 0.98584 0.94815 0.95361 1.69883 1.35161 1.37732 1.09355 0.86509 0.84923 0.78315 0.77369 1.20125 1.21201 1.20195 1.46372 1.14027 1.54231 1.18807 1.16759 0.83337 0.78906 0.84132 1.90765 1.51955 1.61277 1.38781 1.21981 0.93342 1.09893 0.96937 1.23322 1.00791 0.96484 0.86872 1.50012 1.14183 1.40651 1.10440 1.22426 0.90060 0.97460 0.95025 1.24703 0.82284 0.84741 0.86544 1.90533 1.44067 1.21300 1.71872 1.21151 0.95252 0.98050 0.96391 1.21737 1.02715 0.99159 0.95659 1.21901 1.02724 0.93175 1.02210 1.21913 0.94768 1.02877 1.00531 1.82020 0.87775 1.16018 1.17417 1.74666 1.24638 1.09616 0.98797 0.95839 0.94348 0.93084 0.88153 0.94893 0.92570 0.76961 0.78015 0.85329 0.84694 0.91784 0.91594 0.91903 0.91675 0.90887 0.91728 0.91828 0.90815 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.22 5.45 -26.74 -0.15 -3.37 16 3 C 0.27 7.02 2.24 -69.08 -0.15 6.87 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.52 8.73 -34.44 -0.30 -14.83 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.04 11.29 55.43 0.63 -24.41 16 9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.69 -15.61 5.02 -55.98 -0.28 -15.89 16 14 C 0.59 12.47 6.38 -12.47 -0.08 12.39 16 15 O -0.55 -12.66 14.00 5.28 0.07 -12.59 16 16 C -0.08 -1.48 6.99 -83.55 -0.58 -2.07 16 17 C 0.08 1.08 11.27 -16.83 -0.19 0.89 16 18 N -0.37 -4.53 3.41 -62.25 -0.21 -4.74 16 19 C 0.07 0.49 6.29 -5.20 -0.03 0.45 16 20 C 0.35 2.87 6.00 -29.04 -0.17 2.69 16 21 O -0.41 -5.45 15.36 6.00 0.09 -5.36 16 22 C -0.11 -0.53 0.87 -155.66 -0.14 -0.67 16 23 C -0.14 -0.82 7.76 37.16 0.29 -0.54 16 24 C -0.14 -0.47 8.26 37.16 0.31 -0.16 16 25 C -0.14 -0.44 8.25 37.16 0.31 -0.13 16 26 N -0.05 -0.86 12.89 60.35 0.78 -0.08 16 27 N -0.20 -3.74 12.04 32.85 0.40 -3.35 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 30 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 31 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.40 8.54 8.23 -40.82 -0.34 8.20 16 35 H 0.20 2.01 8.06 -52.49 -0.42 1.58 16 36 H 0.13 0.52 7.38 -51.93 -0.38 0.14 16 37 H 0.14 0.37 7.32 -51.93 -0.38 -0.01 16 38 H 0.06 0.47 8.10 -51.92 -0.42 0.05 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 41 H 0.06 0.12 7.28 -51.93 -0.38 -0.26 16 42 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.06 0.09 7.28 -51.93 -0.38 -0.29 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -35.04 378.98 -5.53 -40.58 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.02 Total: 3.54 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.67 Total: 0.45 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 1.31 Total: -48.47 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.04 -5.53 -40.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183794004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.503 kcal (2) G-P(sol) polarization free energy of solvation -35.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds