Wall clock time and date at job start Tue Mar 31 2020 12:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47589 * 2 1 4 4 H 1.08998 * 109.47247 * 305.00359 * 3 2 1 5 5 C 1.50704 * 109.47323 * 184.99800 * 3 2 1 6 6 H 1.08000 * 120.00160 * 240.00271 * 5 3 2 7 7 C 1.37871 * 119.99510 * 60.00161 * 5 3 2 8 8 N 1.31511 * 120.00512 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99670 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47100 * 60.00053 * 9 7 5 11 11 H 1.48506 * 109.46944 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47056 * 300.00046 * 9 7 5 13 13 N 1.46503 * 109.47122 * 65.00076 * 3 2 1 14 14 C 1.34778 * 119.99896 * 275.00265 * 13 3 2 15 15 O 1.21593 * 119.99956 * 359.97438 * 14 13 3 16 16 C 1.47525 * 119.99831 * 179.97438 * 14 13 3 17 17 C 1.36601 * 125.76849 * 179.97438 * 16 14 13 18 18 N 1.34811 * 106.83811 * 179.97438 * 17 16 14 19 19 C 1.46495 * 126.59602 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47546 * 124.97404 * 19 18 17 21 21 O 1.20754 * 119.99947 * 0.02562 * 20 19 18 22 22 C 1.50700 * 120.00126 * 179.97438 * 20 19 18 23 23 C 1.52995 * 109.47265 * 179.97438 * 22 20 19 24 24 C 1.53001 * 109.47586 * 300.00420 * 22 20 19 25 25 C 1.53008 * 109.47018 * 60.00248 * 22 20 19 26 26 N 1.40215 * 106.81108 * 0.02562 * 18 17 16 27 27 N 1.28756 * 108.36742 * 359.97438 * 26 18 17 28 28 H 1.08996 * 109.47727 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46813 * 300.00141 * 1 2 3 30 30 H 1.09004 * 109.47040 * 59.99598 * 1 2 3 31 31 H 1.09004 * 109.46813 * 239.99859 * 2 1 3 32 32 H 1.09004 * 109.47040 * 120.00402 * 2 1 3 33 33 H 0.97001 * 120.00182 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00053 * 94.99808 * 13 3 2 35 35 H 1.07993 * 126.58084 * 359.96218 * 17 16 14 36 36 H 1.09002 * 109.47096 * 244.97589 * 19 18 17 37 37 H 1.08998 * 109.46976 * 4.96932 * 19 18 17 38 38 H 1.09008 * 109.47011 * 60.00520 * 23 22 20 39 39 H 1.09001 * 109.47523 * 179.97438 * 23 22 20 40 40 H 1.08997 * 109.47585 * 300.00634 * 23 22 20 41 41 H 1.09004 * 109.46922 * 59.99558 * 24 22 20 42 42 H 1.08993 * 109.47302 * 180.02562 * 24 22 20 43 43 H 1.09006 * 109.46708 * 300.00117 * 24 22 20 44 44 H 1.08997 * 109.46650 * 60.00090 * 25 22 20 45 45 H 1.09001 * 109.46864 * 179.97438 * 25 22 20 46 46 H 1.09000 * 109.47017 * 299.99681 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8886 0.6524 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8810 -1.3817 10 1 6.5975 0.1470 -0.2348 11 1 6.3978 0.2175 -2.6509 12 1 6.4996 2.2812 -1.3821 13 7 1.6526 2.0974 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3411 2.6326 0.4318 16 6 0.0449 3.3235 2.6278 17 6 -1.1528 3.9331 2.8725 18 7 -1.1013 4.4025 4.1352 19 6 -2.1591 5.1306 4.8401 20 6 -2.4785 4.4256 6.1331 21 8 -1.8836 3.4191 6.4349 22 6 -3.5396 4.9773 7.0500 23 6 -3.6658 4.0795 8.2824 24 6 -3.1517 6.3916 7.4863 25 6 -4.8792 5.0207 6.3120 26 7 0.1595 4.0598 4.6441 27 7 0.8073 3.4255 3.7298 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8293 -0.0611 -2.9499 34 1 2.2720 2.1230 1.9978 35 1 -1.9818 4.0221 2.1861 36 1 -1.8220 6.1451 5.0531 37 1 -3.0522 5.1680 4.2163 38 1 -2.7116 4.0483 8.8085 39 1 -4.4330 4.4788 8.9459 40 1 -3.9424 3.0722 7.9714 41 1 -3.0621 7.0310 6.6080 42 1 -3.9189 6.7905 8.1498 43 1 -2.1973 6.3607 8.0120 44 1 -5.1555 4.0132 6.0013 45 1 -5.6467 5.4194 6.9754 46 1 -4.7896 5.6601 5.4338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183794004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:50 Heat of formation + Delta-G solvation = -12.159854 kcal Electronic energy + Delta-G solvation = -27161.058985 eV Core-core repulsion = 23280.022763 eV Total energy + Delta-G solvation = -3881.036222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.27443 -41.15789 -40.36970 -36.93258 -36.82681 -35.68847 -34.25877 -32.91026 -31.85202 -30.18415 -28.87308 -28.19452 -27.90706 -25.42482 -24.75498 -24.25538 -22.81750 -21.98671 -21.10739 -19.84593 -19.30198 -18.23298 -17.61660 -17.24748 -17.18687 -16.64478 -16.39197 -16.23399 -15.98131 -15.81550 -15.32144 -15.04968 -14.72636 -14.65066 -14.56741 -13.84020 -13.68813 -13.42888 -13.35855 -13.17722 -13.12459 -13.05562 -13.01270 -12.90926 -12.65368 -12.59111 -12.32107 -12.17581 -12.04829 -11.91171 -11.86053 -11.68998 -11.58087 -11.06521 -10.93761 -10.57726 -10.51740 -10.28336 -9.62633 -8.15123 -6.31659 0.12993 0.71017 0.77812 0.99478 1.45046 1.47017 1.54760 2.34462 2.40097 2.54511 2.63921 3.13783 3.25688 3.48438 3.63160 3.83780 3.89766 3.93938 4.00389 4.08119 4.30687 4.40190 4.51795 4.59141 4.68703 4.70667 4.73930 4.79946 4.85858 4.96246 4.97164 5.02794 5.09160 5.23148 5.26820 5.27987 5.39131 5.41674 5.44933 5.55162 5.61315 5.80003 5.90591 6.16978 6.34276 6.73675 6.78172 7.03709 7.31331 7.48257 8.90098 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027931 B = 0.002410 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.228084 B =11617.619275 C =12010.180420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.064 0.936 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.968 3.032 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.272 1.272 13 N -0.694 5.694 14 C 0.589 3.411 15 O -0.572 6.572 16 C -0.120 4.120 17 C 0.110 3.890 18 N -0.349 5.349 19 C 0.056 3.944 20 C 0.350 3.650 21 O -0.472 6.472 22 C -0.100 4.100 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.143 4.143 26 N -0.074 5.074 27 N -0.231 5.231 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.401 0.599 35 H 0.244 0.756 36 H 0.165 0.835 37 H 0.187 0.813 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.978 14.977 18.587 31.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.793 3.207 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.197 1.197 13 N -0.341 5.341 14 C 0.374 3.626 15 O -0.452 6.452 16 C -0.259 4.259 17 C -0.046 4.046 18 N -0.134 5.134 19 C -0.064 4.064 20 C 0.224 3.776 21 O -0.345 6.345 22 C -0.102 4.102 23 C -0.195 4.195 24 C -0.200 4.200 25 C -0.200 4.200 26 N -0.055 5.055 27 N -0.105 5.105 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.235 0.765 35 H 0.260 0.740 36 H 0.182 0.818 37 H 0.204 0.796 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.262 14.396 19.133 30.730 hybrid contribution 0.817 -0.446 -0.674 1.149 sum -18.445 13.950 18.459 29.590 Atomic orbital electron populations 1.21675 0.96604 0.99317 1.00436 1.21802 0.94167 0.98961 1.01200 1.18474 0.93731 0.89326 0.80844 0.97183 1.21515 0.91520 1.39281 1.06717 0.91792 1.25699 1.03209 0.94258 0.94904 1.70014 1.37000 1.38115 1.09753 0.85459 0.79249 0.78433 0.77555 1.19376 1.20658 1.19741 1.46197 1.15095 1.54988 1.17837 1.17089 0.82310 0.78072 0.85128 1.90735 1.52318 1.62078 1.40050 1.21616 0.95583 1.12765 0.95922 1.23825 0.99892 0.93554 0.87364 1.50310 1.13832 1.39180 1.10083 1.23227 0.90391 0.97949 0.94784 1.25415 0.81623 0.83488 0.87065 1.90540 1.46506 1.24115 1.73314 1.21178 0.95363 0.98425 0.95207 1.21762 1.02167 0.98846 0.96733 1.21951 1.02411 0.92116 1.03483 1.21968 0.93413 1.02992 1.01635 1.81919 0.89691 1.16493 1.17382 1.74631 1.25951 1.10711 0.99239 0.93512 0.94184 0.94554 0.90456 0.94791 0.92435 0.76474 0.73983 0.81778 0.79566 0.93895 0.89510 0.93765 0.89226 0.89378 0.93281 0.92951 0.89457 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.06 16 2 C -0.12 -6.30 5.45 30.59 0.17 -6.14 16 3 C 0.28 15.03 2.24 44.24 0.10 15.13 16 4 H 0.01 0.63 7.58 -2.39 -0.02 0.61 16 5 C -0.55 -30.86 8.73 25.60 0.22 -30.64 16 6 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 1.10 5.29 84.65 0.45 1.54 16 8 N -0.91 -52.72 11.29 21.44 0.24 -52.48 16 9 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 N -0.69 -32.49 5.02 -449.28 -2.25 -34.75 16 14 C 0.59 25.43 6.38 86.69 0.55 25.98 16 15 O -0.57 -26.62 14.00 -4.01 -0.06 -26.67 16 16 C -0.12 -4.24 6.99 40.82 0.29 -3.95 16 17 C 0.11 2.70 11.27 83.85 0.95 3.65 16 18 N -0.35 -7.71 3.41 -350.85 -1.20 -8.91 16 19 C 0.06 0.51 6.29 85.63 0.54 1.05 16 20 C 0.35 5.06 6.00 29.10 0.17 5.24 16 21 O -0.47 -12.62 15.36 -1.43 -0.02 -12.64 16 22 C -0.10 -0.74 0.87 -52.93 -0.05 -0.79 16 23 C -0.14 -1.60 7.76 71.98 0.56 -1.04 16 24 C -0.14 -0.45 8.26 71.98 0.59 0.14 16 25 C -0.14 -0.31 8.25 71.98 0.59 0.29 16 26 N -0.07 -2.41 12.89 37.02 0.48 -1.94 16 27 N -0.23 -8.61 12.04 -49.99 -0.60 -9.21 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 1.80 5.65 -2.38 -0.01 1.79 16 30 H 0.04 1.75 7.84 -2.39 -0.02 1.73 16 31 H 0.08 4.36 5.95 -2.38 -0.01 4.34 16 32 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.40 17.91 8.23 -92.71 -0.76 17.15 16 35 H 0.24 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.17 0.47 7.38 -2.39 -0.02 0.45 16 37 H 0.19 -0.17 7.32 -2.39 -0.02 -0.19 16 38 H 0.04 0.66 8.10 -2.38 -0.02 0.64 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 41 H 0.09 -0.14 7.28 -2.38 -0.02 -0.16 16 42 H 0.09 0.06 8.14 -2.39 -0.02 0.05 16 43 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 44 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 46 H 0.09 -0.28 7.28 -2.39 -0.02 -0.30 16 Total: -1.00 -81.71 378.98 4.60 -77.11 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.23 Total: 18.36 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.75 Total: 5.40 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -3.33 Total: -107.28 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.08 Total: -39.31 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -81.71 4.60 -77.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183794004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.951 kcal (2) G-P(sol) polarization free energy of solvation -81.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds