Wall clock time and date at job start Tue Mar 31 2020 14:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.48633 * 2 1 4 4 C 1.53092 * 109.48961 * 239.96669 * 2 1 3 5 5 C 1.53182 * 109.16177 * 182.40249 * 4 2 1 6 6 H 1.09007 * 109.61396 * 176.89354 * 5 4 2 7 7 N 1.46502 * 109.54556 * 297.11626 * 5 4 2 8 8 C 1.34776 * 120.00065 * 274.55560 * 7 5 4 9 9 O 1.21594 * 119.99804 * 359.97438 * 8 7 5 10 10 N 1.34776 * 120.00060 * 180.02562 * 8 7 5 11 11 C 1.40193 * 120.00043 * 180.02562 * 10 8 7 12 12 C 1.40402 * 125.97069 * 359.97438 * 11 10 8 13 13 C 1.35245 * 107.86627 * 179.77501 * 12 11 10 14 14 N 1.34963 * 107.85990 * 0.22862 * 13 12 11 15 15 C 1.46495 * 125.98010 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47319 * 125.00174 * 15 14 13 17 17 H 1.07996 * 120.00446 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99818 * 180.02562 * 16 15 14 19 19 N 1.31503 * 120.00345 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99856 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47064 * 89.99658 * 20 18 16 22 22 H 1.48499 * 109.47212 * 210.00323 * 20 18 16 23 23 H 1.48511 * 109.46958 * 329.99941 * 20 18 16 24 24 N 1.31205 * 125.97551 * 180.17889 * 11 10 8 25 25 C 1.53180 * 109.03672 * 56.98480 * 5 4 2 26 26 C 1.53097 * 109.16072 * 303.01945 * 25 5 4 27 27 H 1.08994 * 109.47833 * 297.62363 * 26 25 5 28 28 C 1.53001 * 109.47626 * 177.60041 * 26 25 5 29 29 O 1.42897 * 109.41408 * 57.60648 * 26 25 5 30 30 H 1.08995 * 109.47093 * 299.97662 * 1 2 3 31 31 H 1.09000 * 109.46753 * 59.97965 * 1 2 3 32 32 H 1.09004 * 109.47146 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.52202 * 62.50311 * 4 2 1 34 34 H 1.08996 * 109.52422 * 302.31018 * 4 2 1 35 35 H 0.96998 * 119.99397 * 94.56030 * 7 5 4 36 36 H 0.96998 * 119.99402 * 359.97438 * 10 8 7 37 37 H 1.08002 * 126.07048 * 0.04567 * 12 11 10 38 38 H 1.07999 * 126.07438 * 180.24830 * 13 12 11 39 39 H 1.09005 * 109.47217 * 245.00508 * 15 14 13 40 40 H 1.09005 * 109.47021 * 4.99647 * 15 14 13 41 41 H 0.97001 * 120.00648 * 180.02562 * 19 18 16 42 42 H 1.09007 * 109.52126 * 62.92082 * 25 5 4 43 43 H 1.08998 * 109.52502 * 183.04609 * 25 5 4 44 44 H 1.08999 * 109.47013 * 60.00251 * 28 26 25 45 45 H 1.09007 * 109.46645 * 179.97438 * 28 26 25 46 46 H 1.08994 * 109.47577 * 299.99920 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0408 -0.7223 -1.2494 5 6 3.5714 -0.7707 -1.2119 6 1 3.9409 -1.3316 -2.0703 7 7 4.1059 0.5928 -1.2504 8 6 4.2926 1.2102 -2.4338 9 8 4.0179 0.6354 -3.4694 10 7 4.7849 2.4644 -2.4692 11 6 4.9786 3.1068 -3.7002 12 6 4.7045 2.5642 -4.9658 13 6 5.0210 3.4956 -5.8939 14 7 5.4830 4.5855 -5.2458 15 6 5.9388 5.8296 -5.8707 16 6 5.1738 6.9920 -5.2923 17 1 4.4229 6.8212 -4.5352 18 6 5.4319 8.2736 -5.7304 19 7 6.3460 8.4817 -6.6527 20 14 4.4831 9.7145 -5.0140 21 1 5.2043 10.2410 -3.8274 22 1 4.3630 10.7852 -6.0358 23 1 3.1277 9.2623 -4.6090 24 7 5.4513 4.3188 -3.8711 25 6 4.0179 -1.4597 0.0813 26 6 3.4307 -0.7090 1.2793 27 1 3.8190 0.3093 1.2960 28 6 3.8228 -1.4260 2.5728 29 8 2.0066 -0.6741 1.1665 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7151 -0.1845 -2.1398 34 1 1.6447 -1.7375 -1.2708 35 1 4.3254 1.0511 -0.4242 36 1 5.0043 2.9227 -1.6430 37 1 4.3070 1.5796 -5.1630 38 1 4.9214 3.3867 -6.9638 39 1 7.0035 5.9638 -5.6789 40 1 5.7669 5.7804 -6.9460 41 1 6.5279 9.3834 -6.9607 42 1 3.6616 -2.4899 0.0868 43 1 5.1061 -1.4503 0.1420 44 1 4.9092 -1.4532 2.6581 45 1 3.4050 -0.8911 3.4257 46 1 3.4341 -2.4441 2.5561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245564558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:33 Heat of formation + Delta-G solvation = -0.319771 kcal Electronic energy + Delta-G solvation = -27175.982912 eV Core-core repulsion = 23295.460114 eV Total energy + Delta-G solvation = -3880.522798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97168 -40.29047 -39.07407 -35.50543 -34.62146 -34.04855 -33.37804 -31.95130 -30.72477 -29.54686 -29.22585 -26.77860 -26.60295 -23.62854 -23.00191 -22.15896 -22.08577 -20.61352 -19.84499 -19.72782 -18.06742 -16.87668 -16.80006 -16.57027 -16.14264 -15.88342 -15.63204 -15.00937 -14.79495 -14.56297 -14.25948 -14.06693 -13.83777 -13.28489 -13.16587 -12.86061 -12.79318 -12.44988 -12.33786 -12.29918 -12.26806 -12.21683 -12.14400 -11.77881 -11.30901 -11.28788 -11.04057 -10.89565 -10.64379 -10.42427 -10.25800 -10.08817 -9.75984 -9.69325 -9.49322 -9.22991 -8.63226 -8.10098 -7.41449 -6.24099 -4.29092 2.35460 2.66012 3.10459 3.23620 3.29364 3.32642 3.34377 3.59392 3.83146 4.22967 4.28069 4.36161 4.38733 4.49551 4.57033 4.70713 4.88019 5.07893 5.09580 5.11009 5.20422 5.26133 5.37274 5.39000 5.49923 5.55702 5.60710 5.68301 5.74271 5.76040 5.81219 5.85507 5.93497 6.21450 6.30747 6.54183 6.57594 6.87100 6.96820 7.00471 7.10397 7.49469 7.69755 7.82137 7.96785 8.07168 8.57282 8.66608 8.81147 9.36453 10.84588 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018999 B = 0.002431 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.434755 B =11515.171128 C =12034.539142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.058 0.942 4 C -0.162 4.162 5 C 0.164 3.836 6 H 0.097 0.903 7 N -0.742 5.742 8 C 0.714 3.286 9 O -0.566 6.566 10 N -0.644 5.644 11 C 0.275 3.725 12 C -0.286 4.286 13 C 0.051 3.949 14 N -0.321 5.321 15 C 0.259 3.741 16 C -0.528 4.528 17 H 0.069 0.931 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.908 3.092 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 N -0.308 5.308 25 C -0.158 4.158 26 C 0.086 3.914 27 H 0.055 0.945 28 C -0.145 4.145 29 O -0.377 6.377 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.393 0.607 36 H 0.406 0.594 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.267 0.733 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 -20.478 15.067 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.031 3.969 3 H 0.076 0.924 4 C -0.201 4.201 5 C 0.059 3.941 6 H 0.115 0.885 7 N -0.399 5.399 8 C 0.413 3.587 9 O -0.441 6.441 10 N -0.294 5.294 11 C 0.021 3.979 12 C -0.317 4.317 13 C -0.099 4.099 14 N -0.102 5.102 15 C 0.141 3.859 16 C -0.566 4.566 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.139 5.139 25 C -0.196 4.196 26 C 0.028 3.972 27 H 0.073 0.927 28 C -0.202 4.202 29 O -0.297 6.297 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.228 0.772 36 H 0.240 0.760 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.966 -19.804 14.639 25.339 hybrid contribution -0.293 0.833 0.463 0.997 sum -6.258 -18.971 15.102 25.042 Atomic orbital electron populations 1.21759 0.92980 1.02854 1.02558 1.22051 0.95097 0.95125 0.84637 0.92401 1.22646 0.95751 1.02453 0.99246 1.20839 0.92932 0.81525 0.98832 0.88506 1.45214 1.70816 1.16976 1.06884 1.15628 0.78321 0.80495 0.84220 1.90866 1.56617 1.65273 1.31333 1.41394 1.66947 1.14129 1.06884 1.18779 1.01666 0.92044 0.85393 1.21503 1.17429 1.03428 0.89372 1.22558 1.00241 0.87909 0.99221 1.49053 1.46148 1.13269 1.01773 1.19731 0.96426 0.76869 0.92855 1.21257 1.21607 0.90465 1.23287 0.91329 1.24946 0.95321 0.98968 0.94868 1.69912 1.32052 1.22306 1.29107 0.86330 0.80208 0.81212 0.78756 1.20352 1.20982 1.19725 1.77319 1.26831 1.13258 0.96482 1.22550 1.01990 1.00959 0.94128 1.22030 0.81743 0.98297 0.95095 0.92737 1.21767 1.01349 1.01158 0.95933 1.87934 1.20355 1.78099 1.43281 0.91923 0.90944 0.91826 0.89825 0.90090 0.77204 0.75976 0.82204 0.81543 0.93777 0.92542 0.92332 0.89244 0.89979 0.91003 0.91758 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.57 37.16 0.36 -0.79 16 2 C 0.09 0.78 3.10 -26.68 -0.08 0.70 16 3 H 0.06 0.54 7.75 -51.93 -0.40 0.14 16 4 C -0.16 -1.46 5.09 -26.59 -0.14 -1.59 16 5 C 0.16 1.45 2.82 -67.74 -0.19 1.26 16 6 H 0.10 0.99 7.57 -51.93 -0.39 0.60 16 7 N -0.74 -7.24 4.40 -58.49 -0.26 -7.50 16 8 C 0.71 10.20 8.51 -86.92 -0.74 9.47 16 9 O -0.57 -9.91 13.13 5.28 0.07 -9.84 16 10 N -0.64 -9.90 5.46 -15.51 -0.08 -9.99 16 11 C 0.28 5.54 8.11 -154.37 -1.25 4.29 16 12 C -0.29 -5.72 9.61 -39.83 -0.38 -6.10 16 13 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 14 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 15 C 0.26 6.60 6.26 -5.20 -0.03 6.56 16 16 C -0.53 -14.71 9.24 -34.44 -0.32 -15.03 16 17 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.90 -25.36 13.28 55.43 0.74 -24.62 16 20 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 N -0.31 -7.09 12.42 31.44 0.39 -6.70 16 25 C -0.16 -1.03 5.07 -26.59 -0.13 -1.16 16 26 C 0.09 0.60 3.09 -26.68 -0.08 0.51 16 27 H 0.05 0.35 6.71 -51.93 -0.35 0.00 16 28 C -0.14 -0.81 9.56 37.16 0.36 -0.45 16 29 O -0.38 -3.43 10.05 -35.23 -0.35 -3.78 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.39 2.94 7.08 -40.82 -0.29 2.65 16 36 H 0.41 5.06 8.84 -40.82 -0.36 4.70 16 37 H 0.16 3.13 5.91 -52.49 -0.31 2.82 16 38 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 39 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 41 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -32.85 375.85 -9.16 -42.01 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.14 Total: 6.05 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -2.93 Total: 0.08 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.56 Total: -56.53 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.28 Total: -13.62 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.85 -9.16 -42.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245564558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.689 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds