Wall clock time and date at job start Tue Mar 31 2020 13:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46770 * 2 1 4 4 N 1.46504 * 109.46892 * 180.02562 * 3 2 1 5 5 C 1.36957 * 119.99925 * 96.86467 * 4 3 2 6 6 H 1.07996 * 119.99599 * 165.07229 * 5 4 3 7 7 C 1.38984 * 119.99940 * 345.07651 * 5 4 3 8 8 N 1.31406 * 120.00311 * 341.04205 * 7 5 4 9 9 Si 1.86809 * 119.99840 * 161.04665 * 7 5 4 10 10 H 1.48497 * 109.46898 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46837 * 119.99661 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99598 * 9 7 5 13 13 C 1.34778 * 119.99810 * 276.86693 * 4 3 2 14 14 O 1.21623 * 119.99837 * 186.39477 * 13 4 3 15 15 C 1.47430 * 119.99988 * 6.39317 * 13 4 3 16 16 C 1.36675 * 125.77774 * 182.07081 * 15 13 4 17 17 N 1.34840 * 106.82335 * 179.71864 * 16 15 13 18 18 C 1.46500 * 126.58596 * 180.25709 * 17 16 15 19 19 C 1.50706 * 109.46957 * 125.00156 * 18 17 16 20 20 O 1.20760 * 119.99683 * 0.02562 * 19 18 17 21 21 C 1.50694 * 120.00284 * 179.97438 * 19 18 17 22 22 C 1.53001 * 109.47400 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.47068 * 300.00063 * 21 19 18 24 24 C 1.52995 * 109.47227 * 60.00012 * 21 19 18 25 25 N 1.40201 * 106.82017 * 0.25957 * 17 16 15 26 26 N 1.28756 * 108.38623 * 0.02562 * 25 17 16 27 27 H 1.09002 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46696 * 299.99633 * 1 2 3 29 29 H 1.08994 * 109.47747 * 60.00097 * 1 2 3 30 30 H 1.09006 * 109.46860 * 240.00047 * 2 1 3 31 31 H 1.09002 * 109.47422 * 119.99898 * 2 1 3 32 32 H 1.08995 * 109.46933 * 60.00248 * 3 2 1 33 33 H 1.09002 * 109.47064 * 300.00117 * 3 2 1 34 34 H 0.96995 * 119.99930 * 179.97438 * 8 7 5 35 35 H 1.08000 * 126.58459 * 359.97438 * 16 15 13 36 36 H 1.09000 * 109.47639 * 244.99691 * 18 17 16 37 37 H 1.09001 * 109.47632 * 5.00196 * 18 17 16 38 38 H 1.08999 * 109.46949 * 59.99619 * 22 21 19 39 39 H 1.08997 * 109.47375 * 179.97438 * 22 21 19 40 40 H 1.08995 * 109.46805 * 299.99964 * 22 21 19 41 41 H 1.09002 * 109.47403 * 59.99806 * 23 21 19 42 42 H 1.09001 * 109.47089 * 179.97438 * 23 21 19 43 43 H 1.09000 * 109.47256 * 299.99774 * 23 21 19 44 44 H 1.08995 * 109.47303 * 59.99837 * 24 21 19 45 45 H 1.09001 * 109.47366 * 180.02562 * 24 21 19 46 46 H 1.09003 * 109.47336 * 299.99908 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1893 1.5845 -1.1785 6 1 5.2419 1.8256 -1.1657 7 6 3.5290 1.4184 -2.3901 8 7 2.3831 0.7764 -2.4314 9 14 4.2705 2.1077 -3.9601 10 1 5.5561 2.7812 -3.6461 11 1 4.5136 1.0010 -4.9200 12 1 3.3315 3.0879 -4.5622 13 6 4.1793 1.3029 1.1579 14 8 5.3899 1.4190 1.1747 15 6 3.4495 1.0093 2.4049 16 6 4.0070 0.8842 3.6465 17 7 2.9985 0.6231 4.5026 18 6 3.1121 0.4156 5.9483 19 6 2.1983 1.3748 6.6668 20 8 1.5217 2.1512 6.0361 21 6 2.1280 1.3643 8.1720 22 6 1.1336 2.4272 8.6437 23 6 1.6679 -0.0139 8.6515 24 6 3.5116 1.6693 8.7494 25 7 1.8205 0.5883 3.7432 26 7 2.1236 0.8157 2.5127 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.9222 0.6608 -3.2769 35 1 5.0537 0.9806 3.8948 36 1 2.8280 -0.6082 6.1920 37 1 4.1414 0.5912 6.2610 38 1 0.1478 2.2103 8.2323 39 1 1.0824 2.4193 9.7324 40 1 1.4619 3.4088 8.3021 41 1 2.3766 -0.7708 8.3156 42 1 1.6175 -0.0216 9.7403 43 1 0.6821 -0.2312 8.2403 44 1 3.8395 2.6511 8.4078 45 1 3.4609 1.6613 9.8382 46 1 4.2205 0.9124 8.4135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266093651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:47 Heat of formation + Delta-G solvation = 21.871246 kcal Electronic energy + Delta-G solvation = -28080.046007 eV Core-core repulsion = 24200.485484 eV Total energy + Delta-G solvation = -3879.560523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.12694 -41.12105 -40.09611 -37.22520 -36.80747 -35.55039 -34.03786 -33.13191 -31.79093 -30.10347 -28.18929 -27.98532 -27.57003 -26.47018 -24.67133 -24.02419 -22.68469 -22.28951 -21.14458 -19.55448 -18.95327 -18.50846 -17.57487 -17.38204 -16.80278 -16.33966 -16.23238 -16.18661 -15.81276 -15.48453 -15.16197 -15.14419 -14.79514 -14.70068 -14.57012 -13.86679 -13.65457 -13.55686 -13.34003 -13.13462 -13.05372 -13.03217 -12.90818 -12.64104 -12.60862 -12.53407 -12.19335 -12.10531 -12.04101 -11.90292 -11.83928 -11.66204 -11.58441 -11.19775 -10.74541 -10.53517 -10.48618 -10.08798 -9.59899 -8.25512 -5.86624 0.25166 0.81020 0.89313 1.13492 1.44469 1.46133 1.59404 2.28615 2.47546 2.64163 3.01231 3.18043 3.44711 3.55943 3.66975 3.88910 3.91879 3.97718 4.10120 4.18301 4.34920 4.43905 4.51595 4.63320 4.71103 4.74656 4.81178 4.85775 4.86515 4.96931 4.97641 5.01873 5.03485 5.22756 5.23569 5.31980 5.35836 5.39420 5.40213 5.47513 5.51939 5.71188 6.04660 6.10093 6.38197 6.52955 7.06445 7.19418 7.46228 8.02386 8.67854 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025314 B = 0.003016 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.834394 B = 9280.834499 C = 9892.052971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.098 4.098 3 C 0.148 3.852 4 N -0.432 5.432 5 C -0.348 4.348 6 H 0.081 0.919 7 C 0.002 3.998 8 N -0.863 5.863 9 Si 0.992 3.008 10 H -0.274 1.274 11 H -0.273 1.273 12 H -0.268 1.268 13 C 0.499 3.501 14 O -0.631 6.631 15 C -0.102 4.102 16 C 0.090 3.910 17 N -0.352 5.352 18 C 0.058 3.942 19 C 0.349 3.651 20 O -0.472 6.472 21 C -0.100 4.100 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.142 4.142 25 N -0.086 5.086 26 N -0.217 5.217 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.274 0.726 35 H 0.234 0.766 36 H 0.161 0.839 37 H 0.182 0.818 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 -3.238 24.272 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.136 4.136 3 C 0.025 3.975 4 N -0.146 5.146 5 C -0.476 4.476 6 H 0.099 0.901 7 C -0.202 4.202 8 N -0.500 5.500 9 Si 0.815 3.185 10 H -0.198 1.198 11 H -0.198 1.198 12 H -0.193 1.193 13 C 0.287 3.713 14 O -0.520 6.520 15 C -0.241 4.241 16 C -0.066 4.066 17 N -0.138 5.138 18 C -0.062 4.062 19 C 0.224 3.776 20 O -0.344 6.344 21 C -0.101 4.101 22 C -0.194 4.194 23 C -0.199 4.199 24 C -0.199 4.199 25 N -0.065 5.065 26 N -0.090 5.090 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.250 0.750 36 H 0.178 0.822 37 H 0.199 0.801 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.107 0.893 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.533 -3.023 23.845 24.169 hybrid contribution 1.109 0.552 -1.021 1.605 sum -1.424 -2.471 22.824 23.001 Atomic orbital electron populations 1.21402 0.95246 1.00650 1.00393 1.21585 0.95751 0.96471 0.99811 1.21421 0.78391 0.98417 0.99308 1.43889 1.06960 1.58473 1.05319 1.19760 0.95926 1.48567 0.83367 0.90140 1.26090 0.96959 0.95495 1.01648 1.70218 1.16724 1.35264 1.27757 0.84921 0.78311 0.78282 0.77003 1.19836 1.19803 1.19349 1.17076 0.86059 0.85006 0.83111 1.90531 1.14458 1.60323 1.86655 1.21664 0.90498 1.15727 0.96179 1.23588 0.97043 0.97777 0.88206 1.50225 1.05765 1.48316 1.09487 1.23135 1.06483 1.04325 0.72264 1.25433 0.78795 0.80334 0.93068 1.90533 1.37596 1.35624 1.70649 1.21173 0.99814 0.99559 0.89573 1.21753 0.97940 0.97403 1.02298 1.21942 1.01737 0.92774 1.03426 1.21956 0.92477 1.02569 1.02938 1.81855 1.05629 1.22844 0.96219 1.74963 1.13230 1.10415 1.10421 0.92908 0.93638 0.93480 0.91324 0.95245 0.93208 0.91162 0.91541 0.75023 0.82163 0.80112 0.93890 0.89363 0.93809 0.89427 0.89212 0.93291 0.93027 0.89272 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 9.91 71.98 0.71 -4.10 16 2 C -0.10 -4.71 5.02 30.60 0.15 -4.55 16 3 C 0.15 7.66 4.15 86.38 0.36 8.02 16 4 N -0.43 -24.59 2.64 -639.23 -1.69 -26.28 16 5 C -0.35 -20.60 9.41 84.07 0.79 -19.81 16 6 H 0.08 5.02 7.30 -2.91 -0.02 5.00 16 7 C 0.00 0.10 4.97 84.94 0.42 0.52 16 8 N -0.86 -45.72 8.32 21.67 0.18 -45.54 16 9 Si 0.99 42.95 29.59 68.60 2.03 44.98 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 13 C 0.50 27.31 7.56 86.66 0.66 27.96 16 14 O -0.63 -36.93 16.49 -4.10 -0.07 -37.00 16 15 C -0.10 -4.60 6.39 40.80 0.26 -4.34 16 16 C 0.09 2.96 11.28 83.87 0.95 3.90 16 17 N -0.35 -10.05 3.41 -350.73 -1.20 -11.25 16 18 C 0.06 0.83 6.29 85.63 0.54 1.37 16 19 C 0.35 6.47 6.00 29.10 0.17 6.65 16 20 O -0.47 -14.50 15.35 -1.45 -0.02 -14.52 16 21 C -0.10 -1.04 0.87 -52.93 -0.05 -1.09 16 22 C -0.14 -1.91 7.76 71.98 0.56 -1.36 16 23 C -0.14 -0.84 8.26 71.98 0.59 -0.25 16 24 C -0.14 -0.72 8.25 71.98 0.59 -0.12 16 25 N -0.09 -3.30 12.89 37.02 0.48 -2.82 16 26 N -0.22 -9.63 6.88 -50.00 -0.34 -9.97 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 3.68 6.02 -2.38 -0.01 3.66 16 31 H 0.03 1.45 6.00 -2.39 -0.01 1.43 16 32 H 0.05 2.56 5.99 -2.39 -0.01 2.54 16 33 H 0.07 3.83 6.08 -2.39 -0.01 3.82 16 34 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 35 H 0.23 5.68 8.06 -2.91 -0.02 5.66 16 36 H 0.16 1.28 7.38 -2.39 -0.02 1.26 16 37 H 0.18 0.83 7.32 -2.39 -0.02 0.81 16 38 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 41 H 0.09 0.14 7.28 -2.39 -0.02 0.12 16 42 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.09 0.02 7.29 -2.39 -0.02 0.00 16 Total: -1.00 -82.99 371.38 7.07 -75.92 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.98 Total: 13.67 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 6.71 Total: 12.81 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -2.57 Total: -95.86 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -0.09 Total: -51.52 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -82.99 7.07 -75.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266093651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.790 kcal (2) G-P(sol) polarization free energy of solvation -82.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds