Wall clock time and date at job start Tue Mar 31 2020 13:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47301 * 2 1 4 4 N 1.46502 * 109.47161 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00140 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99967 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00130 * 179.97438 * 5 4 3 8 8 C 1.53004 * 109.47297 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46888 * 179.97438 * 8 7 5 10 10 O 1.21291 * 120.00259 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99258 * 179.97438 * 9 8 7 12 12 C 1.40162 * 119.99437 * 180.02562 * 11 9 8 13 13 C 1.40415 * 125.97631 * 0.31570 * 12 11 9 14 14 C 1.35232 * 107.86655 * 180.13084 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84998 * 14 13 12 16 16 N 1.34968 * 107.86163 * 359.58679 * 14 13 12 17 17 C 1.46509 * 125.97450 * 180.23081 * 16 14 13 18 18 C 1.50698 * 109.47025 * 89.99735 * 17 16 14 19 19 H 1.08000 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99358 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00418 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47105 * 90.00179 * 22 20 18 24 24 H 1.48499 * 109.46684 * 210.00001 * 22 20 18 25 25 H 1.48503 * 109.47226 * 329.99788 * 22 20 18 26 26 N 1.31221 * 125.97269 * 179.97438 * 12 11 9 27 27 H 1.09000 * 109.46853 * 300.00603 * 1 2 3 28 28 H 1.09003 * 109.46649 * 60.00030 * 1 2 3 29 29 H 1.08995 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47308 * 239.99647 * 2 1 3 31 31 H 1.09003 * 109.47150 * 119.99803 * 2 1 3 32 32 H 1.08993 * 109.47412 * 60.00126 * 3 2 1 33 33 H 1.09000 * 109.46910 * 299.99211 * 3 2 1 34 34 H 0.97004 * 119.99850 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.47369 * 59.99833 * 7 5 4 36 36 H 1.09003 * 109.47238 * 299.99898 * 7 5 4 37 37 H 1.08995 * 109.46550 * 60.00023 * 8 7 5 38 38 H 1.08990 * 109.46928 * 299.99983 * 8 7 5 39 39 H 0.96991 * 120.00480 * 0.02562 * 11 9 8 40 40 H 1.07995 * 126.06342 * 0.02562 * 13 12 11 41 41 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 42 42 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 43 43 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 44 44 H 1.08994 * 109.46750 * 210.00045 * 17 16 14 45 45 H 1.09004 * 109.46474 * 329.99737 * 17 16 14 46 46 H 0.96998 * 120.00265 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1790 2.6095 -0.0012 6 8 3.5726 3.6599 -0.0018 7 6 5.6860 2.6095 -0.0013 8 6 6.1961 4.0520 -0.0027 9 6 7.7031 4.0519 -0.0021 10 8 8.3095 3.0014 -0.0012 11 7 8.3770 5.2191 -0.0037 12 6 9.7786 5.2190 -0.0037 13 6 10.6034 4.0826 -0.0084 14 6 11.8887 4.5029 -0.0037 15 6 13.1106 3.6208 -0.0032 16 7 11.8830 5.8526 -0.0056 17 6 13.0650 6.7182 -0.0067 18 6 13.4704 7.0130 -1.4279 19 1 12.9040 6.5976 -2.2483 20 6 14.5638 7.8141 -1.6807 21 7 15.2531 8.3204 -0.6818 22 14 15.0659 8.1801 -3.4424 23 1 14.3713 9.4064 -3.9104 24 1 16.5348 8.3887 -3.5052 25 1 14.6907 7.0362 -4.3119 26 7 10.5494 6.2809 -0.0056 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8901 34 1 3.9900 0.6023 -0.0006 35 1 6.0493 2.0952 -0.8910 36 1 6.0493 2.0961 0.8890 37 1 5.8328 4.5666 0.8868 38 1 5.8327 4.5649 -0.8931 39 1 7.8920 6.0591 -0.0048 40 1 10.2703 3.0554 -0.0131 41 1 13.4057 3.4095 1.0247 42 1 13.9259 4.1290 -0.5181 43 1 12.8840 2.6858 -0.5156 44 1 12.8322 7.6515 0.5058 45 1 13.8839 6.2155 0.5080 46 1 16.0225 8.8836 -0.8597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271178303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:56 Heat of formation + Delta-G solvation = -41.384939 kcal Electronic energy + Delta-G solvation = -25756.549575 eV Core-core repulsion = 21874.246058 eV Total energy + Delta-G solvation = -3882.303517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.29564 -41.03272 -40.30441 -36.80227 -36.34187 -35.29102 -34.10943 -33.40188 -32.88650 -32.56655 -28.87022 -27.92972 -27.81440 -25.96088 -24.74353 -22.66974 -22.45889 -21.26745 -21.13419 -20.58527 -18.81148 -18.48669 -17.68017 -17.25714 -17.17386 -17.11464 -16.86738 -16.59920 -16.20369 -15.91492 -15.44345 -15.17998 -14.77457 -14.40344 -14.28672 -14.12453 -13.80171 -13.78938 -13.59988 -13.55721 -13.29344 -13.14095 -13.12500 -12.81876 -12.80950 -12.69506 -12.25188 -12.16212 -12.07771 -12.01621 -11.73745 -11.53003 -11.33173 -10.93321 -10.86145 -10.73818 -10.08206 -9.57506 -9.12948 -8.33093 -6.51004 0.92467 1.33339 1.37643 1.39417 1.44664 1.51021 1.63824 2.13932 2.22667 2.33184 2.50778 2.96568 3.48020 3.79940 3.92128 3.98835 4.08595 4.12037 4.15257 4.17255 4.37626 4.49165 4.65443 4.68131 4.77490 4.78247 4.81455 4.86939 4.87272 4.89075 4.95253 5.00219 5.03564 5.16355 5.17102 5.26011 5.28197 5.35983 5.51448 5.53327 5.80737 5.96368 6.26883 6.28295 6.55043 6.61899 7.00067 7.12962 7.20154 7.25518 8.72801 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030891 B = 0.001786 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.199890 B =15674.791389 C =15935.823062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.115 3.885 4 N -0.721 5.721 5 C 0.515 3.485 6 O -0.583 6.583 7 C -0.119 4.119 8 C -0.109 4.109 9 C 0.524 3.476 10 O -0.544 6.544 11 N -0.627 5.627 12 C 0.271 3.729 13 C -0.297 4.297 14 C 0.086 3.914 15 C -0.085 4.085 16 N -0.344 5.344 17 C 0.275 3.725 18 C -0.554 4.554 19 H 0.049 0.951 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.270 1.270 25 H -0.269 1.269 26 N -0.362 5.362 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.417 0.583 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.424 0.576 40 H 0.171 0.829 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.023 0.977 45 H 0.052 0.948 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.727 -18.594 2.084 30.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.008 4.008 4 N -0.374 5.374 5 C 0.302 3.698 6 O -0.463 6.463 7 C -0.159 4.159 8 C -0.149 4.149 9 C 0.312 3.688 10 O -0.420 6.420 11 N -0.277 5.277 12 C 0.017 3.983 13 C -0.328 4.328 14 C -0.045 4.045 15 C -0.143 4.143 16 N -0.126 5.126 17 C 0.156 3.844 18 C -0.592 4.592 19 H 0.067 0.933 20 C -0.177 4.177 21 N -0.556 5.556 22 Si 0.795 3.205 23 H -0.201 1.201 24 H -0.194 1.194 25 H -0.194 1.194 26 N -0.193 5.193 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.254 0.746 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.262 0.738 40 H 0.188 0.812 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.490 -17.165 2.146 29.172 hybrid contribution 0.407 0.113 -0.683 0.803 sum -23.083 -17.052 1.463 28.735 Atomic orbital electron populations 1.21700 0.94385 1.02711 1.02160 1.21692 0.97071 0.94140 1.03668 1.21448 0.79302 0.98635 1.01447 1.45969 1.07680 1.08962 1.74777 1.20876 0.90585 0.83511 0.74788 1.90710 1.71437 1.32732 1.51424 1.21343 0.89992 0.97293 1.07240 1.21308 0.86867 0.99400 1.07340 1.21353 0.91208 0.81914 0.74318 1.90618 1.70637 1.31792 1.48905 1.42730 1.01008 1.11399 1.72556 1.19407 0.85700 0.92547 1.00675 1.21459 0.89649 1.00099 1.21578 1.21790 0.98497 0.84701 0.99464 1.20503 0.91901 0.97836 1.04108 1.48786 1.04159 1.05146 1.54511 1.19237 0.78487 0.88880 0.97761 1.21443 1.13459 1.32562 0.91779 0.93261 1.25723 0.95394 0.94412 1.02206 1.69995 1.19361 1.33184 1.33017 0.85361 0.77830 0.78639 0.78691 1.20077 1.19441 1.19402 1.77181 0.88433 1.21952 1.31697 0.92571 0.92606 0.91260 0.90380 0.90329 0.92539 0.92614 0.74606 0.86857 0.86709 0.86579 0.86756 0.73800 0.81162 0.88886 0.91554 0.87801 0.95873 0.92994 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 71.98 0.71 -0.17 16 2 C -0.13 -0.73 6.05 30.59 0.19 -0.55 16 3 C 0.12 1.28 5.67 86.38 0.49 1.77 16 4 N -0.72 -7.91 5.56 -463.08 -2.57 -10.48 16 5 C 0.51 8.53 7.83 87.66 0.69 9.22 16 6 O -0.58 -14.36 15.98 -3.03 -0.05 -14.41 16 7 C -0.12 -1.66 4.99 29.85 0.15 -1.52 16 8 C -0.11 -1.86 4.99 29.85 0.15 -1.71 16 9 C 0.52 13.29 7.80 87.66 0.68 13.97 16 10 O -0.54 -16.60 13.11 -3.06 -0.04 -16.64 16 11 N -0.63 -18.60 5.45 -307.50 -1.68 -20.28 16 12 C 0.27 10.94 8.11 133.32 1.08 12.02 16 13 C -0.30 -11.91 9.52 22.11 0.21 -11.70 16 14 C 0.09 3.60 6.92 41.38 0.29 3.89 16 15 C -0.09 -2.82 9.89 71.24 0.70 -2.11 16 16 N -0.34 -16.75 3.59 -338.43 -1.22 -17.97 16 17 C 0.28 14.68 5.81 85.63 0.50 15.18 16 18 C -0.55 -31.28 9.39 25.60 0.24 -31.04 16 19 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 20 C 0.02 1.30 5.46 84.66 0.46 1.77 16 21 N -0.92 -51.97 13.29 21.45 0.28 -51.68 16 22 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 N -0.36 -17.18 12.59 -54.44 -0.69 -17.86 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.34 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.42 2.15 8.47 -92.71 -0.79 1.37 16 35 H 0.11 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.11 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.12 1.79 8.10 -2.39 -0.02 1.77 16 38 H 0.11 1.81 8.10 -2.39 -0.02 1.79 16 39 H 0.42 10.24 8.82 -92.71 -0.82 9.42 16 40 H 0.17 6.39 5.92 -2.91 -0.02 6.38 16 41 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.07 2.41 7.71 -2.39 -0.02 2.39 16 43 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 44 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 2.73 7.65 -2.39 -0.02 2.72 16 46 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -75.24 391.27 2.01 -73.23 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -0.60 Total: 21.84 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.54 Total: 9.02 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -5.87 Total: -118.28 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.09 Total: -31.05 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.24 2.01 -73.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271178303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.847 kcal (2) G-P(sol) polarization free energy of solvation -75.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds