Wall clock time and date at job start Tue Mar 31 2020 14:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09009 * 109.47959 * 2 1 4 4 C 1.53089 * 109.48181 * 239.97992 * 2 1 3 5 5 C 1.53187 * 109.15766 * 297.61125 * 4 2 1 6 6 H 1.08998 * 109.53926 * 62.98140 * 5 4 2 7 7 C 1.53003 * 109.53928 * 183.15398 * 5 4 2 8 8 N 1.46497 * 109.46883 * 184.82702 * 7 5 4 9 9 C 1.34775 * 120.00131 * 180.02562 * 8 7 5 10 10 O 1.21600 * 119.99709 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00224 * 179.97438 * 9 8 7 12 12 C 1.40202 * 119.99946 * 179.97438 * 11 9 8 13 13 C 1.40397 * 125.97193 * 0.22529 * 12 11 9 14 14 C 1.35242 * 107.86857 * 180.14808 * 13 12 11 15 15 N 1.34965 * 107.85628 * 359.64252 * 14 13 12 16 16 C 1.46498 * 125.97905 * 180.24975 * 15 14 13 17 17 C 1.50698 * 109.47208 * 125.00102 * 16 15 14 18 18 H 1.07994 * 120.00338 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99732 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00331 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00089 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46929 * 89.99176 * 21 19 17 23 23 H 1.48495 * 109.47236 * 209.99803 * 21 19 17 24 24 H 1.48500 * 109.46903 * 329.99913 * 21 19 17 25 25 N 1.31203 * 125.97023 * 179.97438 * 12 11 9 26 26 C 1.53176 * 109.10963 * 303.06273 * 5 4 2 27 27 C 1.53109 * 109.15591 * 56.85224 * 26 5 4 28 28 O 1.42898 * 109.49025 * 120.02589 * 2 1 3 29 29 H 1.08993 * 109.46818 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47073 * 300.02528 * 1 2 3 31 31 H 1.09004 * 109.46776 * 60.02112 * 1 2 3 32 32 H 1.09000 * 109.52395 * 177.71213 * 4 2 1 33 33 H 1.08996 * 109.52462 * 57.51831 * 4 2 1 34 34 H 1.08998 * 109.47103 * 64.82439 * 7 5 4 35 35 H 1.09005 * 109.47201 * 304.82331 * 7 5 4 36 36 H 0.96997 * 120.00194 * 359.97438 * 8 7 5 37 37 H 0.96997 * 120.00094 * 359.97438 * 11 9 8 38 38 H 1.08005 * 126.06625 * 0.04555 * 13 12 11 39 39 H 1.08002 * 126.07629 * 179.91223 * 14 13 12 40 40 H 1.09002 * 109.47113 * 245.00600 * 16 15 14 41 41 H 1.08998 * 109.47135 * 4.99618 * 16 15 14 42 42 H 0.96994 * 120.00521 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.51994 * 176.84331 * 26 5 4 44 44 H 1.08997 * 109.52618 * 297.03412 * 26 5 4 45 45 H 1.08995 * 109.48225 * 182.49482 * 27 26 5 46 46 H 1.09004 * 109.41735 * 62.50566 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0277 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 1.5760 -2.1813 -1.2121 6 1 0.4871 -2.2181 -1.2424 7 6 2.1471 -2.9313 -2.4173 8 7 1.6101 -4.2940 -2.4436 9 6 1.9768 -5.1441 -3.4231 10 8 2.7530 -4.7797 -4.2852 11 7 1.4832 -6.3980 -3.4470 12 6 1.8642 -7.2820 -4.4663 13 6 2.7506 -6.9965 -5.5169 14 6 2.8525 -8.1039 -6.2865 15 7 2.0689 -9.0590 -5.7431 16 6 1.8888 -10.4193 -6.2562 17 6 2.2091 -11.4127 -5.1692 18 1 2.5158 -11.0656 -4.1936 19 6 2.1107 -12.7649 -5.4202 20 7 1.7367 -13.1877 -6.6081 21 14 2.5071 -13.9964 -4.0727 22 1 1.2744 -14.3017 -3.3030 23 1 3.0324 -15.2446 -4.6818 24 1 3.5296 -13.4215 -3.1620 25 7 1.4583 -8.5223 -4.6023 26 6 2.0753 -2.8334 0.0808 27 6 1.5650 -2.0284 1.2791 28 8 2.0068 -0.6741 1.1663 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 3.1299 -0.6871 -1.2711 33 1 1.6420 -0.2356 -2.1398 34 1 3.2336 -2.9703 -2.3394 35 1 1.8669 -2.4126 -3.3342 36 1 0.9912 -4.5848 -1.7557 37 1 0.8643 -6.6888 -2.7591 38 1 3.2595 -6.0582 -5.6823 39 1 3.4573 -8.2073 -7.1753 40 1 0.8557 -10.5527 -6.5774 41 1 2.5560 -10.5795 -7.1030 42 1 1.6671 -14.1389 -6.7846 43 1 1.7014 -3.8555 0.1411 44 1 3.1652 -2.8423 0.0871 45 1 1.9537 -2.4621 2.2004 46 1 0.4755 -2.0551 1.2961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271411962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:18 Heat of formation + Delta-G solvation = -2.252854 kcal Electronic energy + Delta-G solvation = -26477.426476 eV Core-core repulsion = 22596.819853 eV Total energy + Delta-G solvation = -3880.606623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.78547 -40.34309 -39.42427 -36.17016 -34.64415 -33.57521 -33.18386 -32.46677 -30.84735 -29.30586 -29.03393 -26.97954 -26.20282 -23.97168 -23.24609 -22.46846 -21.52719 -20.41892 -19.91415 -19.60742 -18.05111 -16.91434 -16.63310 -16.55997 -16.41898 -15.98674 -15.63754 -15.16344 -14.99911 -14.75865 -14.38270 -14.20637 -13.96674 -13.80637 -13.59091 -13.05857 -12.76018 -12.60501 -12.51184 -12.29751 -12.23296 -12.19252 -11.75870 -11.68019 -11.39547 -11.09260 -11.01556 -10.89062 -10.51730 -10.41486 -10.25206 -10.07747 -9.89222 -9.67866 -9.48799 -9.23672 -8.62581 -8.08681 -7.39897 -6.23507 -4.28444 2.38565 2.67946 3.12757 3.23970 3.29675 3.34797 3.42841 3.61554 3.85453 4.18322 4.19915 4.24964 4.30065 4.38250 4.50804 4.63651 4.84749 4.91256 4.92003 4.99499 5.11493 5.19266 5.21046 5.31201 5.40992 5.48854 5.52211 5.55717 5.63912 5.66598 5.72689 5.82363 5.92342 6.21138 6.30272 6.55612 6.59189 6.80857 6.88538 7.01930 7.11723 7.51097 7.70541 7.83458 7.98577 8.08268 8.59761 8.67792 8.81954 9.37007 10.85149 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024722 B = 0.002007 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.332142 B =13945.934401 C =14715.400527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.087 3.913 3 H 0.103 0.897 4 C -0.142 4.142 5 C -0.103 4.103 6 H 0.081 0.919 7 C 0.147 3.853 8 N -0.744 5.744 9 C 0.712 3.288 10 O -0.567 6.567 11 N -0.644 5.644 12 C 0.275 3.725 13 C -0.286 4.286 14 C 0.051 3.949 15 N -0.321 5.321 16 C 0.258 3.742 17 C -0.527 4.527 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 N -0.308 5.308 26 C -0.152 4.152 27 C 0.057 3.943 28 O -0.377 6.377 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.395 0.605 37 H 0.406 0.594 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.267 0.733 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 25.448 12.584 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.029 3.971 3 H 0.121 0.879 4 C -0.180 4.180 5 C -0.121 4.121 6 H 0.100 0.900 7 C 0.022 3.978 8 N -0.401 5.401 9 C 0.412 3.588 10 O -0.443 6.443 11 N -0.294 5.294 12 C 0.021 3.979 13 C -0.318 4.318 14 C -0.099 4.099 15 N -0.103 5.103 16 C 0.141 3.859 17 C -0.566 4.566 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.139 5.139 26 C -0.190 4.190 27 C -0.020 4.020 28 O -0.296 6.296 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.229 0.771 37 H 0.240 0.760 38 H 0.178 0.822 39 H 0.185 0.815 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.309 24.670 12.235 27.634 hybrid contribution -0.157 -0.694 0.730 1.019 sum -2.466 23.976 12.964 27.368 Atomic orbital electron populations 1.22477 0.96362 1.02860 1.02840 1.22167 0.93479 0.96454 0.85002 0.87918 1.22164 1.02401 0.94632 0.98813 1.21486 1.01058 0.95154 0.94437 0.90044 1.21222 0.98692 0.80166 0.97681 1.45018 1.51834 1.13338 1.29945 1.15626 0.81014 0.79879 0.82324 1.90873 1.38033 1.76387 1.38973 1.41382 1.49121 1.10315 1.28564 1.18782 0.98474 0.89646 0.90959 1.21510 1.09675 1.01648 0.98946 1.22556 0.97798 0.89253 1.00304 1.49049 1.31854 1.12148 1.17203 1.19731 0.98914 0.72082 0.95174 1.21258 1.46793 0.90283 0.98241 0.91322 1.24952 0.94790 0.98306 0.96101 1.69916 1.46892 1.15598 1.20968 0.86323 0.78768 0.79995 0.81380 1.20362 1.20995 1.19741 1.77315 1.23476 1.06798 1.06337 1.22280 1.02574 0.99632 0.94512 1.22591 0.98801 0.82262 0.98351 1.88005 1.73691 1.24759 1.43171 0.91788 0.91849 0.91333 0.90438 0.90322 0.91263 0.91276 0.77077 0.75952 0.82214 0.81532 0.93778 0.92534 0.92345 0.90702 0.90536 0.88842 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.90 8.65 37.16 0.32 -0.58 16 2 C 0.09 0.50 3.91 -26.68 -0.10 0.40 16 3 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 4 C -0.14 -0.78 4.93 -26.59 -0.13 -0.91 16 5 C -0.10 -0.59 2.00 -90.43 -0.18 -0.77 16 6 H 0.08 0.42 6.62 -51.93 -0.34 0.08 16 7 C 0.15 1.22 5.07 -4.04 -0.02 1.20 16 8 N -0.74 -7.11 5.32 -65.22 -0.35 -7.46 16 9 C 0.71 10.40 8.53 -86.92 -0.74 9.66 16 10 O -0.57 -10.30 13.47 5.28 0.07 -10.23 16 11 N -0.64 -10.00 5.46 -15.50 -0.08 -10.08 16 12 C 0.28 5.60 8.11 -154.36 -1.25 4.35 16 13 C -0.29 -5.80 9.61 -39.84 -0.38 -6.19 16 14 C 0.05 1.03 11.44 -17.24 -0.20 0.84 16 15 N -0.32 -7.53 3.67 -62.56 -0.23 -7.76 16 16 C 0.26 6.61 6.26 -5.20 -0.03 6.58 16 17 C -0.53 -14.73 9.24 -34.44 -0.32 -15.05 16 18 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.90 -25.39 13.29 55.43 0.74 -24.65 16 21 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 N -0.31 -7.14 12.42 31.44 0.39 -6.75 16 26 C -0.15 -0.90 5.26 -26.58 -0.14 -1.04 16 27 C 0.06 0.34 6.51 37.21 0.24 0.58 16 28 O -0.38 -2.97 10.60 -35.23 -0.37 -3.34 16 29 H 0.06 0.31 4.98 -51.93 -0.26 0.05 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.40 2.66 7.70 -40.82 -0.31 2.34 16 37 H 0.41 5.04 8.84 -40.82 -0.36 4.68 16 38 H 0.16 3.19 5.91 -52.48 -0.31 2.88 16 39 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 40 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.07 0.39 7.29 -51.93 -0.38 0.01 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.28 6.34 -51.93 -0.33 -0.05 16 LS Contribution 371.40 15.07 5.60 5.60 Total: -1.00 -33.75 371.40 -9.20 -42.95 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.91 Total: 4.68 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -3.03 Total: 0.65 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.47 Total: -56.70 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.30 Total: -13.56 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.75 -9.20 -42.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271411962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.700 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds