Wall clock time and date at job start Tue Mar 31 2020 14:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09009 * 109.47959 * 2 1 4 4 C 1.53089 * 109.48181 * 239.97992 * 2 1 3 5 5 C 1.53187 * 109.15766 * 297.61125 * 4 2 1 6 6 H 1.08998 * 109.53926 * 62.98140 * 5 4 2 7 7 C 1.53003 * 109.53928 * 183.15398 * 5 4 2 8 8 N 1.46497 * 109.46883 * 184.82702 * 7 5 4 9 9 C 1.34775 * 120.00131 * 180.02562 * 8 7 5 10 10 O 1.21600 * 119.99709 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00224 * 179.97438 * 9 8 7 12 12 C 1.40202 * 119.99946 * 179.97438 * 11 9 8 13 13 C 1.40397 * 125.97193 * 0.22529 * 12 11 9 14 14 C 1.35242 * 107.86857 * 180.14808 * 13 12 11 15 15 N 1.34965 * 107.85628 * 359.64252 * 14 13 12 16 16 C 1.46498 * 125.97905 * 180.24975 * 15 14 13 17 17 C 1.50698 * 109.47208 * 125.00102 * 16 15 14 18 18 H 1.07994 * 120.00338 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99732 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00331 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00089 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46929 * 89.99176 * 21 19 17 23 23 H 1.48495 * 109.47236 * 209.99803 * 21 19 17 24 24 H 1.48500 * 109.46903 * 329.99913 * 21 19 17 25 25 N 1.31203 * 125.97023 * 179.97438 * 12 11 9 26 26 C 1.53176 * 109.10963 * 303.06273 * 5 4 2 27 27 C 1.53109 * 109.15591 * 56.85224 * 26 5 4 28 28 O 1.42898 * 109.49025 * 120.02589 * 2 1 3 29 29 H 1.08993 * 109.46818 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47073 * 300.02528 * 1 2 3 31 31 H 1.09004 * 109.46776 * 60.02112 * 1 2 3 32 32 H 1.09000 * 109.52395 * 177.71213 * 4 2 1 33 33 H 1.08996 * 109.52462 * 57.51831 * 4 2 1 34 34 H 1.08998 * 109.47103 * 64.82439 * 7 5 4 35 35 H 1.09005 * 109.47201 * 304.82331 * 7 5 4 36 36 H 0.96997 * 120.00194 * 359.97438 * 8 7 5 37 37 H 0.96997 * 120.00094 * 359.97438 * 11 9 8 38 38 H 1.08005 * 126.06625 * 0.04555 * 13 12 11 39 39 H 1.08002 * 126.07629 * 179.91223 * 14 13 12 40 40 H 1.09002 * 109.47113 * 245.00600 * 16 15 14 41 41 H 1.08998 * 109.47135 * 4.99618 * 16 15 14 42 42 H 0.96994 * 120.00521 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.51994 * 176.84331 * 26 5 4 44 44 H 1.08997 * 109.52618 * 297.03412 * 26 5 4 45 45 H 1.08995 * 109.48225 * 182.49482 * 27 26 5 46 46 H 1.09004 * 109.41735 * 62.50566 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0277 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 1.5760 -2.1813 -1.2121 6 1 0.4871 -2.2181 -1.2424 7 6 2.1471 -2.9313 -2.4173 8 7 1.6101 -4.2940 -2.4436 9 6 1.9768 -5.1441 -3.4231 10 8 2.7530 -4.7797 -4.2852 11 7 1.4832 -6.3980 -3.4470 12 6 1.8642 -7.2820 -4.4663 13 6 2.7506 -6.9965 -5.5169 14 6 2.8525 -8.1039 -6.2865 15 7 2.0689 -9.0590 -5.7431 16 6 1.8888 -10.4193 -6.2562 17 6 2.2091 -11.4127 -5.1692 18 1 2.5158 -11.0656 -4.1936 19 6 2.1107 -12.7649 -5.4202 20 7 1.7367 -13.1877 -6.6081 21 14 2.5071 -13.9964 -4.0727 22 1 1.2744 -14.3017 -3.3030 23 1 3.0324 -15.2446 -4.6818 24 1 3.5296 -13.4215 -3.1620 25 7 1.4583 -8.5223 -4.6023 26 6 2.0753 -2.8334 0.0808 27 6 1.5650 -2.0284 1.2791 28 8 2.0068 -0.6741 1.1663 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 3.1299 -0.6871 -1.2711 33 1 1.6420 -0.2356 -2.1398 34 1 3.2336 -2.9703 -2.3394 35 1 1.8669 -2.4126 -3.3342 36 1 0.9912 -4.5848 -1.7557 37 1 0.8643 -6.6888 -2.7591 38 1 3.2595 -6.0582 -5.6823 39 1 3.4573 -8.2073 -7.1753 40 1 0.8557 -10.5527 -6.5774 41 1 2.5560 -10.5795 -7.1030 42 1 1.6671 -14.1389 -6.7846 43 1 1.7014 -3.8555 0.1411 44 1 3.1652 -2.8423 0.0871 45 1 1.9537 -2.4621 2.2004 46 1 0.4755 -2.0551 1.2961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271411962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:17 Heat of formation + Delta-G solvation = -24.939123 kcal Electronic energy + Delta-G solvation = -26478.410226 eV Core-core repulsion = 22596.819853 eV Total energy + Delta-G solvation = -3881.590373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.21866 -41.15357 -40.49794 -37.00071 -36.10602 -35.27711 -34.16007 -33.04249 -32.53243 -30.93088 -29.62773 -28.57198 -27.15690 -24.99467 -24.45046 -23.43531 -22.58957 -21.92085 -21.28124 -20.20049 -19.18739 -18.68485 -18.24396 -17.32436 -17.19774 -16.93430 -16.78627 -16.38639 -16.15234 -15.69283 -15.59449 -15.43718 -15.23738 -14.59569 -14.40743 -14.27448 -14.13740 -13.79400 -13.69226 -13.55365 -13.13543 -12.97126 -12.92163 -12.73157 -12.64904 -12.28697 -12.11937 -12.06444 -11.89995 -11.64179 -11.54097 -11.38895 -11.14180 -10.94507 -10.71696 -10.38320 -10.20438 -9.71407 -9.04352 -8.32132 -6.46266 1.08116 1.15087 1.38618 1.39245 1.50838 1.71281 2.12586 2.36539 2.42085 2.99007 2.99367 3.16634 3.63606 3.75225 3.79359 3.98160 4.05557 4.21028 4.29059 4.39676 4.45073 4.47071 4.53255 4.69229 4.72549 4.78923 4.79860 4.88478 4.93200 4.95949 5.02180 5.03050 5.05207 5.13840 5.17874 5.21890 5.29373 5.42320 5.52168 5.57595 5.77333 5.89101 5.98531 6.30180 6.36297 6.64438 6.77109 7.15890 7.23516 7.43931 8.75263 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024722 B = 0.002007 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.332142 B =13945.934401 C =14715.400527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.108 0.892 4 C -0.140 4.140 5 C -0.091 4.091 6 H 0.096 0.904 7 C 0.147 3.853 8 N -0.720 5.720 9 C 0.710 3.290 10 O -0.603 6.603 11 N -0.636 5.636 12 C 0.285 3.715 13 C -0.293 4.293 14 C 0.056 3.944 15 N -0.345 5.345 16 C 0.272 3.728 17 C -0.546 4.546 18 H 0.052 0.948 19 C 0.017 3.983 20 N -0.920 5.920 21 Si 0.972 3.028 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.273 1.273 25 N -0.347 5.347 26 C -0.151 4.151 27 C 0.054 3.946 28 O -0.400 6.400 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.413 0.587 37 H 0.421 0.579 38 H 0.166 0.834 39 H 0.201 0.799 40 H 0.022 0.978 41 H 0.058 0.942 42 H 0.272 0.728 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 26.204 13.753 29.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.026 3.974 3 H 0.125 0.875 4 C -0.178 4.178 5 C -0.110 4.110 6 H 0.114 0.886 7 C 0.024 3.976 8 N -0.377 5.377 9 C 0.410 3.590 10 O -0.481 6.481 11 N -0.288 5.288 12 C 0.029 3.971 13 C -0.325 4.325 14 C -0.092 4.092 15 N -0.127 5.127 16 C 0.154 3.846 17 C -0.585 4.585 18 H 0.070 0.930 19 C -0.183 4.183 20 N -0.559 5.559 21 Si 0.796 3.204 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.198 1.198 25 N -0.178 5.178 26 C -0.188 4.188 27 C -0.022 4.022 28 O -0.320 6.320 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.250 0.750 37 H 0.258 0.742 38 H 0.183 0.817 39 H 0.217 0.783 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.115 0.885 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.671 25.468 13.454 28.927 hybrid contribution -0.044 -0.763 0.397 0.861 sum -2.715 24.705 13.851 28.452 Atomic orbital electron populations 1.22450 0.95438 1.03102 1.03227 1.22284 0.94222 0.96561 0.84370 0.87453 1.22152 1.01937 0.94416 0.99313 1.21415 1.01673 0.94897 0.93028 0.88583 1.21320 0.98143 0.79352 0.98822 1.44879 1.51113 1.12973 1.28733 1.15813 0.80641 0.79772 0.82809 1.90843 1.39649 1.76930 1.40670 1.41377 1.49406 1.10109 1.27931 1.19083 0.97257 0.89294 0.91479 1.21682 1.09890 1.01787 0.99117 1.23152 0.96834 0.88341 1.00911 1.48815 1.33642 1.12005 1.18262 1.19335 0.97439 0.73170 0.94694 1.21395 1.47485 0.91408 0.98162 0.92960 1.25751 0.94338 0.99896 0.98326 1.69992 1.47160 1.16310 1.22453 0.85338 0.78604 0.77815 0.78593 1.19743 1.19732 1.19780 1.77236 1.25169 1.08243 1.07192 1.22264 1.01743 1.00231 0.94593 1.22677 0.99492 0.81588 0.98447 1.87977 1.74283 1.25621 1.44104 0.91564 0.92127 0.90325 0.91329 0.89176 0.92483 0.91598 0.75016 0.74195 0.81669 0.78267 0.96053 0.92374 0.91853 0.89720 0.91931 0.88531 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 8.65 71.98 0.62 -0.76 16 2 C 0.08 0.83 3.91 30.63 0.12 0.95 16 3 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 4 C -0.14 -1.31 4.93 30.69 0.15 -1.16 16 5 C -0.09 -0.87 2.00 -10.67 -0.02 -0.89 16 6 H 0.10 0.70 6.62 -2.39 -0.02 0.68 16 7 C 0.15 2.22 5.07 86.38 0.44 2.66 16 8 N -0.72 -12.33 5.32 -478.52 -2.55 -14.88 16 9 C 0.71 19.78 8.53 179.05 1.53 21.31 16 10 O -0.60 -21.39 13.47 -4.03 -0.05 -21.44 16 11 N -0.64 -19.03 5.46 -321.22 -1.75 -20.78 16 12 C 0.28 11.45 8.11 133.31 1.08 12.53 16 13 C -0.29 -11.73 9.61 22.10 0.21 -11.52 16 14 C 0.06 2.25 11.44 83.52 0.96 3.20 16 15 N -0.35 -16.37 3.67 -351.85 -1.29 -17.66 16 16 C 0.27 14.22 6.26 85.63 0.54 14.76 16 17 C -0.55 -30.94 9.24 25.60 0.24 -30.70 16 18 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 19 C 0.02 0.95 5.46 84.66 0.46 1.41 16 20 N -0.92 -52.23 13.29 21.45 0.28 -51.95 16 21 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 N -0.35 -16.22 12.42 -54.44 -0.68 -16.89 16 26 C -0.15 -1.52 5.26 30.69 0.16 -1.36 16 27 C 0.05 0.56 6.51 72.02 0.47 1.03 16 28 O -0.40 -5.81 10.60 -148.98 -1.58 -7.39 16 29 H 0.07 0.46 4.98 -2.39 -0.01 0.45 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.41 4.40 7.70 -92.71 -0.71 3.69 16 37 H 0.42 9.81 8.84 -92.71 -0.82 8.99 16 38 H 0.17 6.48 5.91 -2.91 -0.02 6.46 16 39 H 0.20 6.34 8.06 -2.91 -0.02 6.31 16 40 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 2.96 8.07 -2.39 -0.02 2.95 16 42 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 43 H 0.08 0.68 7.29 -2.39 -0.02 0.66 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 45 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 0.52 6.34 -2.39 -0.02 0.51 16 Total: -1.00 -72.71 371.40 0.85 -71.86 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.52 Total: 21.99 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.95 Total: 11.47 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -5.98 Total: -122.17 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -1.63 Total: -28.83 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -72.71 0.85 -71.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271411962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.921 kcal (2) G-P(sol) polarization free energy of solvation -72.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds