Wall clock time and date at job start Tue Mar 31 2020 14:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47847 * 2 1 4 4 C 1.53091 * 109.47789 * 120.02326 * 2 1 3 5 5 C 1.53175 * 109.16456 * 62.37681 * 4 2 1 6 6 H 1.08998 * 109.54280 * 297.01822 * 5 4 2 7 7 C 1.53005 * 109.54340 * 176.84604 * 5 4 2 8 8 N 1.46505 * 109.46928 * 174.99727 * 7 5 4 9 9 C 1.34769 * 119.99765 * 179.97438 * 8 7 5 10 10 O 1.21595 * 120.00079 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00262 * 180.02562 * 9 8 7 12 12 C 1.40193 * 120.00543 * 180.02562 * 11 9 8 13 13 C 1.40405 * 125.96781 * 359.97438 * 12 11 9 14 14 C 1.35242 * 107.86398 * 180.02562 * 13 12 11 15 15 N 1.34967 * 107.86285 * 0.02562 * 14 13 12 16 16 C 1.46492 * 125.98111 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47740 * 124.99674 * 16 15 14 18 18 H 1.08003 * 119.99899 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00291 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00159 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99865 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46873 * 90.00385 * 21 19 17 23 23 H 1.48496 * 109.47245 * 209.99986 * 21 19 17 24 24 H 1.48500 * 109.47246 * 330.00323 * 21 19 17 25 25 N 1.31206 * 125.97571 * 180.02562 * 12 11 9 26 26 C 1.53176 * 109.03970 * 56.97609 * 5 4 2 27 27 C 1.53089 * 109.16363 * 303.02287 * 26 5 4 28 28 O 1.42899 * 109.48229 * 239.96616 * 2 1 3 29 29 H 1.09004 * 109.47240 * 299.97610 * 1 2 3 30 30 H 1.08996 * 109.47433 * 59.97614 * 1 2 3 31 31 H 1.08999 * 109.47479 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.52177 * 302.46617 * 4 2 1 33 33 H 1.09010 * 109.51977 * 182.28164 * 4 2 1 34 34 H 1.08997 * 109.47299 * 54.99999 * 7 5 4 35 35 H 1.09004 * 109.47117 * 294.99554 * 7 5 4 36 36 H 0.96994 * 120.00225 * 0.02562 * 8 7 5 37 37 H 0.97004 * 119.99659 * 359.97438 * 11 9 8 38 38 H 1.07998 * 126.07030 * 359.77731 * 13 12 11 39 39 H 1.08009 * 126.07276 * 179.97438 * 14 13 12 40 40 H 1.09006 * 109.46934 * 245.00093 * 16 15 14 41 41 H 1.09007 * 109.47302 * 4.99452 * 16 15 14 42 42 H 0.96995 * 120.00678 * 179.97438 * 20 19 17 43 43 H 1.09009 * 109.52091 * 62.92573 * 26 5 4 44 44 H 1.08996 * 109.52659 * 183.11555 * 26 5 4 45 45 H 1.09002 * 109.48152 * 297.62344 * 27 26 5 46 46 H 1.08999 * 109.48354 * 177.58997 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0404 -0.7222 1.2496 5 6 1.5757 -2.1812 1.2124 6 1 0.4867 -2.2179 1.2427 7 6 2.1467 -2.9312 2.4175 8 7 1.6062 -4.2926 2.4463 9 6 1.9722 -5.1423 3.4263 10 8 2.7514 -4.7792 4.2862 11 7 1.4754 -6.3949 3.4525 12 6 1.8557 -7.2787 4.4722 13 6 2.7415 -6.9929 5.5234 14 6 2.8458 -8.1014 6.2911 15 7 2.0586 -9.0551 5.7503 16 6 1.8751 -10.4140 6.2658 17 6 0.4068 -10.6754 6.4818 18 1 -0.3174 -9.9063 6.2571 19 6 -0.0121 -11.8964 6.9663 20 7 -1.2936 -12.1247 7.1543 21 14 1.2404 -13.2269 7.3542 22 1 1.6794 -13.0965 8.7668 23 1 0.6239 -14.5621 7.1487 24 1 2.4134 -13.0796 6.4556 25 7 1.4469 -8.5178 4.6105 26 6 2.0764 -2.8323 -0.0806 27 6 1.5645 -2.0286 -1.2788 28 8 2.0066 -0.6743 -1.1663 29 1 -0.3634 0.5135 0.8902 30 1 -0.3634 0.5142 -0.8897 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6420 -0.2355 2.1399 33 1 3.1298 -0.6873 1.2710 34 1 1.8693 -2.4108 3.3342 35 1 3.2330 -2.9732 2.3380 36 1 0.9855 -4.5826 1.7597 37 1 0.8541 -6.6847 2.7663 38 1 3.2524 -6.0556 5.6873 39 1 3.4522 -8.2054 7.1788 40 1 2.2700 -11.1317 5.5467 41 1 2.4058 -10.5184 7.2122 42 1 -1.5884 -12.9837 7.4948 43 1 3.1664 -2.8400 -0.0861 44 1 1.7036 -3.8547 -0.1417 45 1 0.4749 -2.0551 -1.2956 46 1 1.9530 -2.4624 -2.2002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271411966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:21 Heat of formation + Delta-G solvation = 3.801972 kcal Electronic energy + Delta-G solvation = -26484.679475 eV Core-core repulsion = 22604.335409 eV Total energy + Delta-G solvation = -3880.344066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.83398 -40.37110 -39.46961 -36.18363 -34.69280 -33.57417 -33.13324 -32.46916 -31.16252 -29.40476 -29.05081 -27.29665 -26.35308 -23.97095 -23.05968 -22.33880 -21.55133 -20.43908 -19.91497 -19.62592 -18.09307 -17.11447 -16.81991 -16.61303 -16.42359 -16.01655 -15.72981 -15.15295 -15.00697 -14.77436 -14.49389 -14.25395 -13.89388 -13.77622 -13.53513 -13.05845 -13.01742 -12.58767 -12.53585 -12.49686 -12.29992 -12.23181 -12.09870 -11.67955 -11.40427 -11.15392 -11.07131 -10.77654 -10.63777 -10.51270 -10.11125 -9.99263 -9.89533 -9.75506 -9.51762 -9.25194 -8.76142 -8.15721 -7.46333 -6.23013 -4.25102 2.34725 2.60843 3.06949 3.15724 3.22964 3.23683 3.42519 3.52479 3.80573 4.17854 4.18444 4.23418 4.25004 4.32327 4.50681 4.63899 4.85183 4.91411 4.92349 4.99914 5.04861 5.19346 5.21109 5.30748 5.39920 5.43793 5.51495 5.53118 5.63884 5.65558 5.70972 5.73011 5.91969 6.16140 6.25808 6.35343 6.47966 6.58483 6.73181 6.80798 6.96108 7.28678 7.44833 7.83508 7.89888 8.34779 8.57230 8.60710 8.87014 9.32080 10.89711 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.032471 B = 0.001927 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.102288 B =14528.212130 C =14833.566202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.087 3.913 3 H 0.103 0.897 4 C -0.142 4.142 5 C -0.103 4.103 6 H 0.082 0.918 7 C 0.147 3.853 8 N -0.744 5.744 9 C 0.713 3.287 10 O -0.568 6.568 11 N -0.644 5.644 12 C 0.279 3.721 13 C -0.282 4.282 14 C 0.050 3.950 15 N -0.321 5.321 16 C 0.232 3.768 17 C -0.534 4.534 18 H 0.085 0.915 19 C 0.075 3.925 20 N -0.888 5.888 21 Si 0.873 3.127 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.264 1.264 25 N -0.301 5.301 26 C -0.152 4.152 27 C 0.056 3.944 28 O -0.378 6.378 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.396 0.604 37 H 0.407 0.593 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.041 0.959 41 H 0.049 0.951 42 H 0.268 0.732 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.120 22.695 -15.053 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.029 3.971 3 H 0.121 0.879 4 C -0.180 4.180 5 C -0.122 4.122 6 H 0.100 0.900 7 C 0.022 3.978 8 N -0.401 5.401 9 C 0.412 3.588 10 O -0.443 6.443 11 N -0.294 5.294 12 C 0.024 3.976 13 C -0.314 4.314 14 C -0.099 4.099 15 N -0.103 5.103 16 C 0.113 3.887 17 C -0.572 4.572 18 H 0.103 0.897 19 C -0.128 4.128 20 N -0.525 5.525 21 Si 0.699 3.301 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.189 1.189 25 N -0.131 5.131 26 C -0.190 4.190 27 C -0.020 4.020 28 O -0.297 6.297 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.242 0.758 38 H 0.180 0.820 39 H 0.186 0.814 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.083 21.942 -14.758 27.134 hybrid contribution 0.078 -0.712 0.203 0.744 sum 6.161 21.231 -14.555 26.468 Atomic orbital electron populations 1.22477 0.96334 1.02888 1.02864 1.22164 0.93503 0.96441 0.84979 0.87915 1.22165 1.02365 0.94640 0.98841 1.21489 1.01118 0.95158 0.94407 0.89984 1.21228 0.98597 0.80195 0.97739 1.45016 1.51612 1.13456 1.29990 1.15615 0.81035 0.79838 0.82284 1.90868 1.38006 1.76367 1.39079 1.41386 1.48896 1.10428 1.28668 1.18788 0.97985 0.89879 0.90915 1.21535 1.09598 1.01438 0.98791 1.22553 0.97825 0.89399 1.00112 1.48581 1.31540 1.12066 1.18067 1.20032 0.99941 0.74632 0.94070 1.21113 0.89687 1.01529 1.44836 0.89662 1.24839 0.95372 0.97856 0.94757 1.69869 1.13993 1.24115 1.44571 0.86901 0.81853 0.81919 0.79396 1.19717 1.20559 1.18861 1.77380 1.21941 1.07441 1.06353 1.22276 1.02502 0.99648 0.94531 1.22593 0.98836 0.82266 0.98324 1.88004 1.73682 1.24772 1.43196 0.91311 0.91844 0.91773 0.90307 0.90461 0.91240 0.91271 0.77023 0.75824 0.82017 0.81429 0.94080 0.93343 0.92199 0.90559 0.90728 0.92794 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.93 8.65 37.16 0.32 -0.61 16 2 C 0.09 0.50 3.91 -26.69 -0.10 0.40 16 3 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.14 -0.78 4.92 -26.59 -0.13 -0.91 16 5 C -0.10 -0.59 2.00 -90.44 -0.18 -0.77 16 6 H 0.08 0.44 6.62 -51.93 -0.34 0.09 16 7 C 0.15 1.21 5.07 -4.04 -0.02 1.19 16 8 N -0.74 -7.06 5.32 -65.22 -0.35 -7.41 16 9 C 0.71 10.31 8.53 -86.92 -0.74 9.57 16 10 O -0.57 -10.16 13.47 5.28 0.07 -10.09 16 11 N -0.64 -9.93 5.45 -15.51 -0.08 -10.02 16 12 C 0.28 5.60 8.11 -154.37 -1.25 4.35 16 13 C -0.28 -5.58 9.61 -39.83 -0.38 -5.96 16 14 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 15 N -0.32 -7.32 3.67 -62.56 -0.23 -7.55 16 16 C 0.23 5.53 5.33 -5.20 -0.03 5.50 16 17 C -0.53 -15.09 9.79 -34.44 -0.34 -15.43 16 18 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 19 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 21 Si 0.87 20.16 27.47 -169.99 -4.67 15.49 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 25 N -0.30 -6.91 12.42 31.44 0.39 -6.52 16 26 C -0.15 -0.87 5.26 -26.59 -0.14 -1.01 16 27 C 0.06 0.33 6.52 37.20 0.24 0.58 16 28 O -0.38 -2.94 10.60 -35.23 -0.37 -3.31 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.32 4.98 -51.93 -0.26 0.06 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.40 2.65 7.72 -40.82 -0.32 2.34 16 37 H 0.41 5.06 8.84 -40.82 -0.36 4.70 16 38 H 0.16 3.14 5.91 -52.49 -0.31 2.83 16 39 H 0.17 2.58 8.06 -52.48 -0.42 2.16 16 40 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 41 H 0.05 1.04 7.50 -51.92 -0.39 0.66 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 44 H 0.07 0.37 7.31 -51.93 -0.38 -0.01 16 45 H 0.05 0.28 6.34 -51.93 -0.33 -0.05 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -35.10 367.83 -8.85 -43.95 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.88 Total: 6.08 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.05 Total: -0.30 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.50 Total: -57.35 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.30 Total: -13.40 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.10 -8.85 -43.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271411966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.754 kcal (2) G-P(sol) polarization free energy of solvation -35.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds