Wall clock time and date at job start Tue Mar 31 2020 14:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49255 * 2 1 4 4 C 1.53091 * 109.47862 * 120.03046 * 2 1 3 5 5 C 1.53176 * 109.21206 * 177.62293 * 4 2 1 6 6 H 1.08995 * 109.54674 * 62.85906 * 5 4 2 7 7 C 1.53002 * 109.53933 * 183.12122 * 5 4 2 8 8 N 1.46503 * 109.47131 * 185.00059 * 7 5 4 9 9 C 1.34776 * 120.00209 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00191 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99733 * 179.97438 * 9 8 7 12 12 C 1.40194 * 119.99749 * 180.02562 * 11 9 8 13 13 C 1.40414 * 125.97406 * 0.02562 * 12 11 9 14 14 C 1.35239 * 107.86586 * 179.97438 * 13 12 11 15 15 N 1.34965 * 107.86276 * 0.02562 * 14 13 12 16 16 C 1.46497 * 125.97575 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47234 * 124.99835 * 16 15 14 18 18 H 1.08005 * 119.99744 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00094 * 180.02562 * 17 16 15 20 20 N 1.31504 * 120.00074 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99683 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47243 * 90.00121 * 21 19 17 23 23 H 1.48505 * 109.47033 * 209.99639 * 21 19 17 24 24 H 1.48494 * 109.47297 * 329.99699 * 21 19 17 25 25 N 1.31211 * 125.97372 * 179.69390 * 12 11 9 26 26 C 1.53174 * 109.04061 * 302.98570 * 5 4 2 27 27 C 1.53097 * 109.16185 * 56.97999 * 26 5 4 28 28 O 1.42902 * 109.41493 * 302.39739 * 27 26 5 29 29 H 1.08995 * 109.47155 * 299.97244 * 1 2 3 30 30 H 1.09011 * 109.46982 * 59.97351 * 1 2 3 31 31 H 1.09002 * 109.47436 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.52401 * 57.68445 * 4 2 1 33 33 H 1.09004 * 109.52068 * 297.56090 * 4 2 1 34 34 H 1.09003 * 109.47242 * 304.99888 * 7 5 4 35 35 H 1.08999 * 109.47469 * 65.00074 * 7 5 4 36 36 H 0.97005 * 119.99848 * 359.97438 * 8 7 5 37 37 H 0.96997 * 120.00284 * 0.02562 * 11 9 8 38 38 H 1.08000 * 126.05964 * 359.97438 * 13 12 11 39 39 H 1.08002 * 126.06636 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.47390 * 245.00217 * 16 15 14 41 41 H 1.09003 * 109.47449 * 4.99768 * 16 15 14 42 42 H 0.97005 * 120.00226 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.52612 * 176.89131 * 26 5 4 44 44 H 1.09004 * 109.52214 * 297.01676 * 26 5 4 45 45 H 1.08997 * 109.47580 * 62.37620 * 27 26 5 46 46 H 1.08996 * 109.48015 * 182.39657 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 1.2495 5 6 3.5711 -0.7709 1.2137 6 1 3.9689 0.2435 1.2425 7 6 4.0864 -1.5590 2.4196 8 7 5.5501 -1.5037 2.4499 9 6 6.2280 -2.1311 3.4313 10 8 5.6250 -2.7435 4.2914 11 7 7.5746 -2.0806 3.4587 12 6 8.2798 -2.7337 4.4793 13 6 7.7139 -3.4731 5.5303 14 6 8.7234 -3.9410 6.2990 15 7 9.8854 -3.5163 5.7598 16 6 11.2272 -3.7962 6.2770 17 6 12.0625 -4.4257 5.1921 18 1 11.6364 -4.6002 4.2152 19 6 13.3705 -4.7798 5.4470 20 7 13.8892 -4.5677 6.6367 21 14 14.4060 -5.5594 4.1019 22 1 15.1041 -4.4961 3.3357 23 1 15.4088 -6.4683 4.7133 24 1 13.5286 -6.3335 3.1876 25 7 9.5844 -2.7660 4.6159 26 6 4.0190 -1.4606 -0.0785 27 6 3.4333 -0.7103 -1.2777 28 8 2.0091 -0.6751 -1.1665 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5143 -0.8898 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6442 -1.7375 1.2709 33 1 1.7138 -0.1850 2.1399 34 1 3.6874 -1.1236 3.3358 35 1 3.7636 -2.5971 2.3402 36 1 6.0313 -1.0155 1.7635 37 1 8.0557 -1.5925 2.7724 38 1 6.6595 -3.6387 5.6953 39 1 8.6182 -4.5463 7.1873 40 1 11.6933 -2.8656 6.6007 41 1 11.1553 -4.4798 7.1230 42 1 14.8093 -4.8172 6.8161 43 1 5.1073 -1.4504 -0.1386 44 1 3.6636 -2.4911 -0.0835 45 1 3.8219 0.3079 -1.2943 46 1 3.7137 -1.2215 -2.1986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271411970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:23 Heat of formation + Delta-G solvation = -28.211808 kcal Electronic energy + Delta-G solvation = -26293.874001 eV Core-core repulsion = 22412.141713 eV Total energy + Delta-G solvation = -3881.732287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.21757 -41.06598 -40.32075 -37.01044 -36.11005 -35.27867 -34.13351 -33.55753 -32.57268 -30.93033 -29.35640 -28.54272 -27.12396 -24.99589 -24.33645 -23.21152 -22.29554 -21.89021 -21.41894 -20.96681 -19.15237 -18.68324 -18.22313 -17.32872 -17.20038 -16.90618 -16.66997 -16.43786 -16.14126 -15.66140 -15.60116 -15.49219 -15.12626 -14.77242 -14.42049 -14.26477 -13.87770 -13.79409 -13.62004 -13.45005 -13.11417 -13.07202 -12.92960 -12.75177 -12.73126 -12.28599 -12.07213 -12.02101 -11.91266 -11.64778 -11.57940 -11.38813 -11.19744 -11.11163 -10.71720 -10.39991 -10.20869 -9.71502 -9.04406 -8.32109 -6.46264 1.08089 1.14808 1.38617 1.39253 1.50826 1.71133 2.12413 2.36518 2.41909 2.89799 2.99366 3.15465 3.60621 3.71949 3.84010 3.98350 4.02458 4.26928 4.29055 4.33308 4.43599 4.51247 4.60341 4.68046 4.75449 4.79042 4.84189 4.86527 4.92659 4.94290 4.95931 5.03257 5.07297 5.12656 5.14748 5.18416 5.33799 5.38217 5.49702 5.57590 5.77268 5.88993 5.98435 6.30151 6.36676 6.64403 6.76983 7.15788 7.23591 7.43650 8.75271 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026283 B = 0.001949 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.071450 B =14360.471650 C =15201.059204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.083 3.917 3 H 0.067 0.933 4 C -0.140 4.140 5 C -0.091 4.091 6 H 0.095 0.905 7 C 0.148 3.852 8 N -0.720 5.720 9 C 0.710 3.290 10 O -0.603 6.603 11 N -0.636 5.636 12 C 0.284 3.716 13 C -0.293 4.293 14 C 0.056 3.944 15 N -0.345 5.345 16 C 0.272 3.728 17 C -0.547 4.547 18 H 0.052 0.948 19 C 0.018 3.982 20 N -0.920 5.920 21 Si 0.972 3.028 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.273 1.273 25 N -0.347 5.347 26 C -0.151 4.151 27 C 0.059 3.941 28 O -0.404 6.404 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.413 0.587 37 H 0.421 0.579 38 H 0.166 0.834 39 H 0.201 0.799 40 H 0.022 0.978 41 H 0.058 0.942 42 H 0.272 0.728 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.450 10.843 -13.763 30.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.026 3.974 3 H 0.085 0.915 4 C -0.178 4.178 5 C -0.110 4.110 6 H 0.113 0.887 7 C 0.024 3.976 8 N -0.377 5.377 9 C 0.410 3.590 10 O -0.481 6.481 11 N -0.288 5.288 12 C 0.029 3.971 13 C -0.325 4.325 14 C -0.092 4.092 15 N -0.127 5.127 16 C 0.154 3.846 17 C -0.585 4.585 18 H 0.071 0.929 19 C -0.182 4.182 20 N -0.559 5.559 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.197 1.197 24 H -0.198 1.198 25 N -0.178 5.178 26 C -0.189 4.189 27 C -0.017 4.017 28 O -0.324 6.324 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.250 0.750 37 H 0.258 0.742 38 H 0.183 0.817 39 H 0.217 0.783 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -23.773 10.558 -13.462 29.290 hybrid contribution 0.787 -0.241 -0.426 0.927 sum -22.986 10.317 -13.888 28.770 Atomic orbital electron populations 1.21794 0.92490 1.02816 1.03184 1.22232 0.95625 0.95182 0.84399 0.91505 1.22192 0.94023 1.02343 0.99279 1.21393 0.96305 1.00189 0.93104 0.88681 1.21305 0.76916 1.00583 0.98759 1.44882 1.07720 1.56396 1.28731 1.15807 0.80292 0.80133 0.82792 1.90840 1.68179 1.48229 1.40836 1.41375 1.04877 1.54605 1.27961 1.19090 0.89793 0.96806 0.91443 1.21684 1.01008 1.10585 0.99192 1.23150 0.84775 1.00334 1.00974 1.48813 1.07597 1.38128 1.18163 1.19336 0.74403 0.96280 0.94630 1.21404 0.97474 1.41535 0.98134 0.92950 1.25739 0.98400 0.95804 0.98286 1.69992 1.15828 1.47756 1.22313 0.85342 0.78050 0.78374 0.78602 1.19762 1.19720 1.19793 1.77239 1.12340 1.21311 1.06958 1.22274 1.01918 1.00125 0.94571 1.22661 0.80224 1.00297 0.98533 1.87942 1.22083 1.78404 1.44007 0.89422 0.92022 0.92460 0.91397 0.89159 0.91565 0.92471 0.74984 0.74187 0.81669 0.78266 0.96033 0.92371 0.91856 0.89630 0.91926 0.91955 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.57 71.98 0.69 -0.63 16 2 C 0.08 0.88 3.27 30.62 0.10 0.98 16 3 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 4 C -0.14 -1.37 4.70 30.68 0.14 -1.22 16 5 C -0.09 -0.88 2.31 -10.68 -0.02 -0.91 16 6 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 7 C 0.15 2.24 5.07 86.38 0.44 2.68 16 8 N -0.72 -12.38 5.32 -478.52 -2.55 -14.93 16 9 C 0.71 19.82 8.53 179.05 1.53 21.35 16 10 O -0.60 -21.41 13.47 -3.99 -0.05 -21.46 16 11 N -0.64 -19.05 5.46 -321.22 -1.75 -20.81 16 12 C 0.28 11.45 8.11 133.32 1.08 12.53 16 13 C -0.29 -11.73 9.61 22.11 0.21 -11.52 16 14 C 0.06 2.25 11.44 83.52 0.96 3.21 16 15 N -0.35 -16.37 3.67 -351.86 -1.29 -17.66 16 16 C 0.27 14.22 6.26 85.63 0.54 14.75 16 17 C -0.55 -31.01 9.23 25.60 0.24 -30.77 16 18 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 19 C 0.02 1.00 5.46 84.66 0.46 1.46 16 20 N -0.92 -52.20 13.29 21.45 0.28 -51.91 16 21 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 N -0.35 -16.23 12.42 -54.43 -0.68 -16.91 16 26 C -0.15 -1.54 5.26 30.69 0.16 -1.37 16 27 C 0.06 0.62 6.84 72.01 0.49 1.11 16 28 O -0.40 -6.02 10.41 -148.98 -1.55 -7.57 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.41 4.42 7.72 -92.70 -0.72 3.70 16 37 H 0.42 9.82 8.84 -92.71 -0.82 9.00 16 38 H 0.17 6.48 5.91 -2.91 -0.02 6.46 16 39 H 0.20 6.34 8.06 -2.91 -0.02 6.31 16 40 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 42 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 43 H 0.09 0.68 7.31 -2.39 -0.02 0.66 16 44 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 46 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -72.85 378.41 0.91 -71.94 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.54 Total: 21.98 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 7.01 Total: 11.65 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -5.98 Total: -122.21 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -1.61 Total: -29.03 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -72.85 0.91 -71.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271411970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.725 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds