Wall clock time and date at job start Tue Mar 31 2020 14:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.48089 * 2 1 4 4 C 1.53090 * 109.48304 * 239.95940 * 2 1 3 5 5 C 1.53176 * 109.16668 * 182.40914 * 4 2 1 6 6 H 1.09005 * 109.54225 * 297.11519 * 5 4 2 7 7 C 1.52994 * 109.54603 * 176.84804 * 5 4 2 8 8 N 1.46501 * 109.47324 * 175.44463 * 7 5 4 9 9 C 1.34774 * 120.00251 * 180.02562 * 8 7 5 10 10 O 1.21589 * 120.00160 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99705 * 180.02562 * 9 8 7 12 12 C 1.40196 * 119.99630 * 180.02562 * 11 9 8 13 13 C 1.40399 * 125.97547 * 359.97438 * 12 11 9 14 14 C 1.35242 * 107.87012 * 180.02562 * 13 12 11 15 15 N 1.34964 * 107.86149 * 0.02562 * 14 13 12 16 16 C 1.46494 * 125.97657 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46756 * 125.00264 * 16 15 14 18 18 H 1.07999 * 120.00419 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99829 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99941 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00037 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47073 * 90.00273 * 21 19 17 23 23 H 1.48501 * 109.46879 * 210.00230 * 21 19 17 24 24 H 1.48500 * 109.47079 * 330.00041 * 21 19 17 25 25 N 1.31212 * 125.97438 * 179.69361 * 12 11 9 26 26 C 1.53181 * 109.03564 * 56.97896 * 5 4 2 27 27 C 1.53096 * 109.16280 * 303.02405 * 26 5 4 28 28 O 1.42902 * 109.47734 * 120.01994 * 2 1 3 29 29 H 1.08997 * 109.47579 * 299.98221 * 1 2 3 30 30 H 1.09002 * 109.47002 * 59.98634 * 1 2 3 31 31 H 1.09006 * 109.47335 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.52564 * 302.31806 * 4 2 1 33 33 H 1.08998 * 109.52249 * 62.43969 * 4 2 1 34 34 H 1.08995 * 109.47540 * 295.44470 * 7 5 4 35 35 H 1.09002 * 109.47335 * 55.44581 * 7 5 4 36 36 H 0.97009 * 119.99557 * 359.97438 * 8 7 5 37 37 H 0.97003 * 120.00569 * 359.97438 * 11 9 8 38 38 H 1.08001 * 126.06594 * 0.02562 * 13 12 11 39 39 H 1.08009 * 126.06960 * 180.02562 * 14 13 12 40 40 H 1.09004 * 109.46662 * 244.99668 * 16 15 14 41 41 H 1.08992 * 109.47755 * 4.99924 * 16 15 14 42 42 H 0.97003 * 120.00232 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.52547 * 183.11606 * 26 5 4 44 44 H 1.09004 * 109.52249 * 62.92485 * 26 5 4 45 45 H 1.08996 * 109.47593 * 177.59033 * 27 26 5 46 46 H 1.08997 * 109.48187 * 297.62027 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2494 5 6 3.5711 -0.7711 -1.2120 6 1 3.9690 0.2433 -1.2408 7 6 4.0878 -1.5599 -2.4168 8 7 5.5519 -1.5135 -2.4395 9 6 6.2310 -2.1430 -3.4188 10 8 5.6286 -2.7499 -4.2831 11 7 7.5779 -2.1007 -3.4393 12 6 8.2843 -2.7551 -4.4582 13 6 7.7192 -3.4879 -5.5141 14 6 8.7297 -3.9598 -6.2792 15 7 9.8917 -3.5448 -5.7323 16 6 11.2343 -3.8317 -6.2433 17 6 11.9793 -2.5385 -6.4519 18 1 11.5005 -1.5970 -6.2268 19 6 13.2724 -2.5573 -6.9302 20 7 13.8557 -3.7038 -7.2039 21 14 14.1957 -0.9543 -7.1894 22 1 14.9248 -0.5963 -5.9462 23 1 15.1652 -1.1159 -8.3027 24 1 13.2312 0.1237 -7.5256 25 7 9.5890 -2.7856 -4.5947 26 6 4.0177 -1.4601 0.0812 27 6 3.4307 -0.7091 1.2793 28 8 2.0065 -0.6740 1.1665 29 1 -0.3634 0.5135 0.8901 30 1 -0.3633 0.5141 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6443 -1.7378 -1.2706 33 1 1.7140 -0.1854 -2.1398 34 1 3.7583 -2.5961 -2.3412 35 1 3.6961 -1.1202 -3.3341 36 1 6.0325 -1.0290 -1.7501 37 1 8.0586 -1.6169 -2.7495 38 1 6.6647 -3.6466 -5.6850 39 1 8.6253 -4.5619 -7.1698 40 1 11.7724 -4.4492 -5.5240 41 1 11.1562 -4.3631 -7.1917 42 1 14.7652 -3.7170 -7.5407 43 1 5.1059 -1.4498 0.1425 44 1 3.6613 -2.4902 0.0870 45 1 3.7099 -1.2199 2.2007 46 1 3.8192 0.3092 1.2959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271411974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:27 Heat of formation + Delta-G solvation = -5.729911 kcal Electronic energy + Delta-G solvation = -26284.371869 eV Core-core repulsion = 22403.614470 eV Total energy + Delta-G solvation = -3880.757399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.75447 -40.15144 -39.37794 -36.18669 -34.64574 -33.56633 -33.27317 -32.90162 -30.84473 -29.28751 -28.73863 -26.95339 -26.17679 -23.86877 -23.13597 -22.13917 -21.41404 -20.74603 -20.32083 -19.75414 -17.97764 -16.87369 -16.72094 -16.56091 -16.25513 -15.97133 -15.69358 -15.16840 -14.87649 -14.78467 -14.45721 -14.10370 -14.09624 -13.85943 -13.15169 -12.97716 -12.78579 -12.69545 -12.51557 -12.32158 -12.29652 -12.19783 -11.76098 -11.57796 -11.39963 -11.11077 -11.03770 -10.88938 -10.71631 -10.41370 -10.25234 -10.08196 -9.89935 -9.68007 -9.48581 -9.23932 -8.62611 -8.08623 -7.39888 -6.23530 -4.28469 2.38344 2.67959 3.12689 3.23851 3.29564 3.33960 3.34706 3.60887 3.85429 4.14276 4.18620 4.26662 4.32800 4.40789 4.48264 4.71270 4.78967 4.92681 5.02776 5.05259 5.11510 5.17915 5.23657 5.30038 5.40684 5.45725 5.51977 5.57625 5.61734 5.66018 5.74859 5.82232 5.89333 6.20936 6.30126 6.55621 6.59136 6.82214 6.88542 7.01918 7.11796 7.51085 7.70518 7.83378 7.98556 8.08269 8.59653 8.67799 8.81964 9.36995 10.85112 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.001901 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.833959 B =14728.704911 C =15167.454609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.087 3.913 3 H 0.058 0.942 4 C -0.142 4.142 5 C -0.102 4.102 6 H 0.079 0.921 7 C 0.147 3.853 8 N -0.745 5.745 9 C 0.713 3.287 10 O -0.567 6.567 11 N -0.644 5.644 12 C 0.275 3.725 13 C -0.286 4.286 14 C 0.051 3.949 15 N -0.321 5.321 16 C 0.258 3.742 17 C -0.528 4.528 18 H 0.069 0.931 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 N -0.308 5.308 26 C -0.153 4.153 27 C 0.062 3.938 28 O -0.381 6.381 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.395 0.605 37 H 0.406 0.594 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.267 0.733 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.688 6.703 14.983 28.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.076 0.924 4 C -0.181 4.181 5 C -0.121 4.121 6 H 0.098 0.902 7 C 0.023 3.977 8 N -0.402 5.402 9 C 0.412 3.588 10 O -0.443 6.443 11 N -0.294 5.294 12 C 0.021 3.979 13 C -0.318 4.318 14 C -0.099 4.099 15 N -0.102 5.102 16 C 0.141 3.859 17 C -0.566 4.566 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 N -0.139 5.139 26 C -0.190 4.190 27 C -0.015 4.015 28 O -0.300 6.300 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.229 0.771 37 H 0.241 0.759 38 H 0.178 0.822 39 H 0.185 0.815 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.980 6.314 14.673 27.987 hybrid contribution 0.693 1.115 -0.070 1.315 sum -22.287 7.429 14.603 27.662 Atomic orbital electron populations 1.21773 0.92958 1.03093 1.02491 1.22081 0.95155 0.94923 0.84936 0.92438 1.22207 0.94338 1.02684 0.98830 1.21466 0.96178 0.99979 0.94485 0.90247 1.21207 0.78063 1.00768 0.97657 1.45023 1.07211 1.58035 1.29892 1.15620 0.80780 0.80122 0.82310 1.90870 1.67726 1.46902 1.38762 1.41382 1.04456 1.55041 1.28501 1.18784 0.90366 0.97779 0.90944 1.21508 1.00812 1.10649 0.98807 1.22556 0.85912 1.01413 1.00031 1.49049 1.07730 1.35891 1.17571 1.19732 0.73377 0.98095 0.94706 1.21265 0.98509 0.92455 1.44395 0.91314 1.24949 0.97092 0.97141 0.94936 1.69919 1.14210 1.24906 1.44324 0.86326 0.79361 0.82892 0.77896 1.20366 1.20990 1.19750 1.77318 1.10859 1.18790 1.06953 1.22292 1.01324 1.00923 0.94508 1.22564 0.80984 0.99546 0.98397 1.87946 1.21028 1.78006 1.43039 0.91851 0.90975 0.91690 0.90411 0.90331 0.91244 0.91245 0.77052 0.75943 0.82217 0.81532 0.93758 0.92534 0.92349 0.90658 0.90498 0.88741 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.56 37.16 0.36 -0.40 16 2 C 0.09 0.53 3.26 -26.68 -0.09 0.45 16 3 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 4 C -0.14 -0.81 4.70 -26.59 -0.13 -0.94 16 5 C -0.10 -0.60 2.31 -90.44 -0.21 -0.81 16 6 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 7 C 0.15 1.24 5.07 -4.04 -0.02 1.22 16 8 N -0.74 -7.15 5.32 -65.23 -0.35 -7.50 16 9 C 0.71 10.42 8.53 -86.92 -0.74 9.68 16 10 O -0.57 -10.31 13.47 5.29 0.07 -10.24 16 11 N -0.64 -10.01 5.46 -15.51 -0.08 -10.10 16 12 C 0.28 5.60 8.11 -154.36 -1.25 4.35 16 13 C -0.29 -5.81 9.61 -39.84 -0.38 -6.19 16 14 C 0.05 1.03 11.44 -17.24 -0.20 0.84 16 15 N -0.32 -7.53 3.67 -62.56 -0.23 -7.76 16 16 C 0.26 6.61 6.26 -5.20 -0.03 6.58 16 17 C -0.53 -14.75 9.23 -34.44 -0.32 -15.07 16 18 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.90 -25.37 13.29 55.43 0.74 -24.64 16 21 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 25 N -0.31 -7.15 12.41 31.44 0.39 -6.76 16 26 C -0.15 -0.89 5.25 -26.59 -0.14 -1.03 16 27 C 0.06 0.37 6.84 37.21 0.25 0.62 16 28 O -0.38 -3.04 10.41 -35.23 -0.37 -3.41 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.40 2.67 7.69 -40.82 -0.31 2.36 16 37 H 0.41 5.05 8.84 -40.82 -0.36 4.68 16 38 H 0.16 3.19 5.91 -52.49 -0.31 2.88 16 39 H 0.17 2.76 8.06 -52.48 -0.42 2.34 16 40 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.07 0.38 7.28 -51.93 -0.38 0.00 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -33.78 378.34 -9.39 -43.16 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.25 Total: 4.26 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -2.99 Total: 0.89 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.47 Total: -56.74 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.30 Total: -13.65 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.78 -9.39 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271411974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.434 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds