Wall clock time and date at job start Tue Mar 31 2020 14:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.48089 * 2 1 4 4 C 1.53090 * 109.48304 * 239.95940 * 2 1 3 5 5 C 1.53176 * 109.16668 * 182.40914 * 4 2 1 6 6 H 1.09005 * 109.54225 * 297.11519 * 5 4 2 7 7 C 1.52994 * 109.54603 * 176.84804 * 5 4 2 8 8 N 1.46501 * 109.47324 * 175.44463 * 7 5 4 9 9 C 1.34774 * 120.00251 * 180.02562 * 8 7 5 10 10 O 1.21589 * 120.00160 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99705 * 180.02562 * 9 8 7 12 12 C 1.40196 * 119.99630 * 180.02562 * 11 9 8 13 13 C 1.40399 * 125.97547 * 359.97438 * 12 11 9 14 14 C 1.35242 * 107.87012 * 180.02562 * 13 12 11 15 15 N 1.34964 * 107.86149 * 0.02562 * 14 13 12 16 16 C 1.46494 * 125.97657 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46756 * 125.00264 * 16 15 14 18 18 H 1.07999 * 120.00419 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99829 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99941 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00037 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47073 * 90.00273 * 21 19 17 23 23 H 1.48501 * 109.46879 * 210.00230 * 21 19 17 24 24 H 1.48500 * 109.47079 * 330.00041 * 21 19 17 25 25 N 1.31212 * 125.97438 * 179.69361 * 12 11 9 26 26 C 1.53181 * 109.03564 * 56.97896 * 5 4 2 27 27 C 1.53096 * 109.16280 * 303.02405 * 26 5 4 28 28 O 1.42902 * 109.47734 * 120.01994 * 2 1 3 29 29 H 1.08997 * 109.47579 * 299.98221 * 1 2 3 30 30 H 1.09002 * 109.47002 * 59.98634 * 1 2 3 31 31 H 1.09006 * 109.47335 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.52564 * 302.31806 * 4 2 1 33 33 H 1.08998 * 109.52249 * 62.43969 * 4 2 1 34 34 H 1.08995 * 109.47540 * 295.44470 * 7 5 4 35 35 H 1.09002 * 109.47335 * 55.44581 * 7 5 4 36 36 H 0.97009 * 119.99557 * 359.97438 * 8 7 5 37 37 H 0.97003 * 120.00569 * 359.97438 * 11 9 8 38 38 H 1.08001 * 126.06594 * 0.02562 * 13 12 11 39 39 H 1.08009 * 126.06960 * 180.02562 * 14 13 12 40 40 H 1.09004 * 109.46662 * 244.99668 * 16 15 14 41 41 H 1.08992 * 109.47755 * 4.99924 * 16 15 14 42 42 H 0.97003 * 120.00232 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.52547 * 183.11606 * 26 5 4 44 44 H 1.09004 * 109.52249 * 62.92485 * 26 5 4 45 45 H 1.08996 * 109.47593 * 177.59033 * 27 26 5 46 46 H 1.08997 * 109.48187 * 297.62027 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7225 -1.2494 5 6 3.5711 -0.7711 -1.2120 6 1 3.9690 0.2433 -1.2408 7 6 4.0878 -1.5599 -2.4168 8 7 5.5519 -1.5135 -2.4395 9 6 6.2310 -2.1430 -3.4188 10 8 5.6286 -2.7499 -4.2831 11 7 7.5779 -2.1007 -3.4393 12 6 8.2843 -2.7551 -4.4582 13 6 7.7192 -3.4879 -5.5141 14 6 8.7297 -3.9598 -6.2792 15 7 9.8917 -3.5448 -5.7323 16 6 11.2343 -3.8317 -6.2433 17 6 11.9793 -2.5385 -6.4519 18 1 11.5005 -1.5970 -6.2268 19 6 13.2724 -2.5573 -6.9302 20 7 13.8557 -3.7038 -7.2039 21 14 14.1957 -0.9543 -7.1894 22 1 14.9248 -0.5963 -5.9462 23 1 15.1652 -1.1159 -8.3027 24 1 13.2312 0.1237 -7.5256 25 7 9.5890 -2.7856 -4.5947 26 6 4.0177 -1.4601 0.0812 27 6 3.4307 -0.7091 1.2793 28 8 2.0065 -0.6740 1.1665 29 1 -0.3634 0.5135 0.8901 30 1 -0.3633 0.5141 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6443 -1.7378 -1.2706 33 1 1.7140 -0.1854 -2.1398 34 1 3.7583 -2.5961 -2.3412 35 1 3.6961 -1.1202 -3.3341 36 1 6.0325 -1.0290 -1.7501 37 1 8.0586 -1.6169 -2.7495 38 1 6.6647 -3.6466 -5.6850 39 1 8.6253 -4.5619 -7.1698 40 1 11.7724 -4.4492 -5.5240 41 1 11.1562 -4.3631 -7.1917 42 1 14.7652 -3.7170 -7.5407 43 1 5.1059 -1.4498 0.1425 44 1 3.6613 -2.4902 0.0870 45 1 3.7099 -1.2199 2.2007 46 1 3.8192 0.3092 1.2959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271411974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:26 Heat of formation + Delta-G solvation = -28.186219 kcal Electronic energy + Delta-G solvation = -26285.345648 eV Core-core repulsion = 22403.614470 eV Total energy + Delta-G solvation = -3881.731178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.21822 -41.06888 -40.32914 -37.01508 -36.11014 -35.27724 -34.13340 -33.55659 -32.57248 -30.92964 -29.35617 -28.54263 -27.12518 -24.99610 -24.33791 -23.21233 -22.29581 -21.88877 -21.41786 -20.96839 -19.15332 -18.68306 -18.22284 -17.33676 -17.17891 -16.92106 -16.68809 -16.46294 -15.94980 -15.92501 -15.49334 -15.48160 -15.13324 -14.77457 -14.42015 -14.27050 -13.86959 -13.79147 -13.62140 -13.44771 -13.12636 -13.07460 -12.91456 -12.75874 -12.72676 -12.28635 -12.07075 -12.02229 -11.90620 -11.66589 -11.56181 -11.39059 -11.19700 -11.11226 -10.71628 -10.39869 -10.20878 -9.71471 -9.04423 -8.32038 -6.46234 1.07985 1.14942 1.38681 1.39336 1.50910 1.71121 2.12447 2.36595 2.41898 2.90353 2.99404 3.15464 3.60626 3.72122 3.83954 3.98358 4.02470 4.26995 4.29046 4.33302 4.43615 4.51280 4.60418 4.67994 4.75513 4.79239 4.84243 4.86573 4.92673 4.94363 4.95928 5.03232 5.07325 5.12645 5.14780 5.18415 5.33792 5.38209 5.49636 5.57650 5.77243 5.88990 5.98442 6.30177 6.36975 6.64438 6.76987 7.15796 7.23614 7.43651 8.75347 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.001901 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.833959 B =14728.704911 C =15167.454609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.083 3.917 3 H 0.066 0.934 4 C -0.140 4.140 5 C -0.092 4.092 6 H 0.094 0.906 7 C 0.148 3.852 8 N -0.720 5.720 9 C 0.710 3.290 10 O -0.603 6.603 11 N -0.636 5.636 12 C 0.284 3.716 13 C -0.293 4.293 14 C 0.056 3.944 15 N -0.345 5.345 16 C 0.272 3.728 17 C -0.547 4.547 18 H 0.052 0.948 19 C 0.018 3.982 20 N -0.920 5.920 21 Si 0.972 3.028 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.273 1.273 25 N -0.347 5.347 26 C -0.150 4.150 27 C 0.059 3.941 28 O -0.404 6.404 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.421 0.579 38 H 0.166 0.834 39 H 0.201 0.799 40 H 0.022 0.978 41 H 0.059 0.941 42 H 0.272 0.728 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.338 8.279 15.461 29.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.026 3.974 3 H 0.084 0.916 4 C -0.178 4.178 5 C -0.110 4.110 6 H 0.112 0.888 7 C 0.024 3.976 8 N -0.377 5.377 9 C 0.410 3.590 10 O -0.481 6.481 11 N -0.288 5.288 12 C 0.029 3.971 13 C -0.325 4.325 14 C -0.092 4.092 15 N -0.127 5.127 16 C 0.153 3.847 17 C -0.585 4.585 18 H 0.071 0.929 19 C -0.183 4.183 20 N -0.559 5.559 21 Si 0.797 3.203 22 H -0.198 1.198 23 H -0.197 1.197 24 H -0.198 1.198 25 N -0.179 5.179 26 C -0.188 4.188 27 C -0.018 4.018 28 O -0.324 6.324 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.250 0.750 37 H 0.258 0.742 38 H 0.183 0.817 39 H 0.217 0.783 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.117 0.883 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.659 7.919 15.212 29.221 hybrid contribution 0.745 0.612 -0.146 0.975 sum -22.914 8.530 15.067 28.720 Atomic orbital electron populations 1.21795 0.92503 1.02831 1.03161 1.22205 0.95638 0.95168 0.84428 0.91589 1.22191 0.94031 1.02362 0.99254 1.21396 0.96297 1.00166 0.93177 0.88794 1.21300 0.76895 1.00635 0.98725 1.44882 1.07668 1.56490 1.28689 1.15806 0.80290 0.80135 0.82791 1.90841 1.68231 1.48549 1.40463 1.41377 1.04826 1.54740 1.27877 1.19085 0.89822 0.96743 0.91477 1.21681 1.00976 1.10840 0.98972 1.23152 0.84783 1.00666 1.00637 1.48813 1.07624 1.37613 1.18647 1.19337 0.74399 0.96883 0.94038 1.21406 0.99351 0.92657 1.45124 0.92926 1.25747 0.97697 1.00475 0.94334 1.69997 1.14711 1.26693 1.44508 0.85338 0.78067 0.78733 0.78206 1.19771 1.19725 1.19760 1.77238 1.12402 1.20458 1.07753 1.22272 1.01932 1.00147 0.94474 1.22669 0.80218 1.00289 0.98584 1.87924 1.22124 1.78407 1.43899 0.92023 0.89481 0.92417 0.91326 0.89239 0.92335 0.91702 0.74984 0.74185 0.81671 0.78265 0.96056 0.92368 0.91861 0.89575 0.91824 0.88267 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.56 71.98 0.69 -0.64 16 2 C 0.08 0.88 3.26 30.62 0.10 0.98 16 3 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 4 C -0.14 -1.37 4.70 30.68 0.14 -1.23 16 5 C -0.09 -0.89 2.31 -10.68 -0.02 -0.91 16 6 H 0.09 0.70 8.14 -2.38 -0.02 0.69 16 7 C 0.15 2.25 5.07 86.38 0.44 2.69 16 8 N -0.72 -12.38 5.32 -478.55 -2.55 -14.93 16 9 C 0.71 19.82 8.53 179.06 1.53 21.35 16 10 O -0.60 -21.41 13.47 -4.00 -0.05 -21.46 16 11 N -0.64 -19.05 5.46 -321.23 -1.75 -20.80 16 12 C 0.28 11.45 8.11 133.31 1.08 12.53 16 13 C -0.29 -11.73 9.61 22.10 0.21 -11.52 16 14 C 0.06 2.25 11.44 83.52 0.96 3.20 16 15 N -0.34 -16.36 3.67 -351.85 -1.29 -17.65 16 16 C 0.27 14.22 6.26 85.63 0.54 14.75 16 17 C -0.55 -30.98 9.23 25.60 0.24 -30.75 16 18 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 19 C 0.02 0.98 5.46 84.66 0.46 1.45 16 20 N -0.92 -52.21 13.29 21.45 0.28 -51.93 16 21 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 N -0.35 -16.24 12.41 -54.43 -0.68 -16.91 16 26 C -0.15 -1.48 5.25 30.69 0.16 -1.32 16 27 C 0.06 0.60 6.84 72.01 0.49 1.09 16 28 O -0.40 -5.95 10.41 -148.98 -1.55 -7.50 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.41 4.42 7.69 -92.70 -0.71 3.71 16 37 H 0.42 9.82 8.84 -92.71 -0.82 9.00 16 38 H 0.17 6.48 5.91 -2.91 -0.02 6.46 16 39 H 0.20 6.34 8.06 -2.91 -0.02 6.31 16 40 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 42 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.09 0.65 7.28 -2.39 -0.02 0.63 16 44 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 45 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -72.78 378.34 0.92 -71.86 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.53 Total: 22.02 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 7.01 Total: 11.68 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -5.98 Total: -122.22 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -1.60 Total: -28.96 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -72.78 0.92 -71.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271411974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.673 kcal (2) G-P(sol) polarization free energy of solvation -72.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds