Wall clock time and date at job start Tue Mar 31 2020 12:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47137 * 2 1 4 4 H 1.09003 * 110.77909 * 51.76334 * 3 2 1 5 5 C 1.54316 * 110.72220 * 288.51946 * 3 2 1 6 6 N 1.47020 * 107.27568 * 219.44342 * 5 3 2 7 7 C 1.34776 * 125.65281 * 178.97789 * 6 5 3 8 8 O 1.21592 * 119.99934 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00490 * 179.97438 * 7 6 5 10 10 C 1.40193 * 120.00312 * 180.02562 * 9 7 6 11 11 C 1.40404 * 125.97243 * 359.97438 * 10 9 7 12 12 C 1.35238 * 107.86685 * 180.02562 * 11 10 9 13 13 C 1.50702 * 126.06982 * 179.97438 * 12 11 10 14 14 N 1.34963 * 107.85908 * 359.97438 * 12 11 10 15 15 C 1.46497 * 125.97616 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47323 * 90.00345 * 15 14 12 17 17 H 1.08001 * 119.99787 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00103 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00000 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99928 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47345 * 59.99644 * 20 18 16 22 22 H 1.48506 * 109.47356 * 179.97438 * 20 18 16 23 23 H 1.48509 * 109.47109 * 299.99569 * 20 18 16 24 24 N 1.31204 * 125.97245 * 179.69176 * 10 9 7 25 25 C 1.47422 * 108.70191 * 358.94070 * 6 5 3 26 26 C 1.54917 * 104.83074 * 24.12901 * 25 6 5 27 27 H 1.09006 * 111.00207 * 204.91491 * 26 25 6 28 28 O 1.42904 * 111.00339 * 81.10296 * 26 25 6 29 29 H 1.08994 * 109.47124 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46841 * 299.99966 * 1 2 3 31 31 H 1.08999 * 109.46847 * 59.99785 * 1 2 3 32 32 H 1.09002 * 109.47513 * 239.99876 * 2 1 3 33 33 H 1.08999 * 109.46847 * 120.00215 * 2 1 3 34 34 H 1.09000 * 109.88340 * 338.86688 * 5 3 2 35 35 H 1.09005 * 109.88355 * 99.87449 * 5 3 2 36 36 H 0.97002 * 119.99560 * 359.97438 * 9 7 6 37 37 H 1.07997 * 126.06086 * 0.02562 * 11 10 9 38 38 H 1.09001 * 109.47465 * 90.02265 * 13 12 11 39 39 H 1.09001 * 109.46652 * 210.02525 * 13 12 11 40 40 H 1.09002 * 109.46855 * 330.02276 * 13 12 11 41 41 H 1.09006 * 109.47474 * 210.00463 * 15 14 12 42 42 H 1.09004 * 109.47346 * 330.00297 * 15 14 12 43 43 H 0.97008 * 119.99784 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.36873 * 265.28987 * 25 6 5 45 45 H 1.09005 * 110.36491 * 142.96394 * 25 6 5 46 46 H 0.96701 * 113.99862 * 61.45256 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5742 2.0173 0.8005 5 6 1.7898 2.1101 -1.3686 6 7 2.9692 2.9325 -1.6753 7 6 3.1486 3.6623 -2.7941 8 8 2.2907 3.6752 -3.6556 9 7 4.2790 4.3777 -2.9581 10 6 4.4653 5.1373 -4.1216 11 6 3.5619 5.2426 -5.1913 12 6 4.1077 6.0649 -6.1159 13 6 3.4841 6.4612 -7.4293 14 7 5.3100 6.4675 -5.6535 15 6 6.2393 7.3672 -6.3414 16 6 5.9428 8.7916 -5.9489 17 1 5.1418 9.0054 -5.2567 18 6 6.6932 9.8220 -6.4744 19 7 7.6682 9.5617 -7.3178 20 14 6.3251 11.5877 -5.9885 21 1 6.4844 11.7405 -4.5200 22 1 7.2672 12.4997 -6.6856 23 1 4.9313 11.9267 -6.3731 24 7 5.5121 5.8780 -4.3990 25 6 3.9229 2.8274 -0.5560 26 6 3.5860 1.4781 0.1265 27 1 3.8925 1.4822 1.1726 28 8 4.1835 0.3859 -0.5751 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6607 1.3464 -2.1355 35 1 0.9003 2.7381 -1.3176 36 1 4.9633 4.3677 -2.2707 37 1 2.6016 4.7537 -5.2628 38 1 2.8889 7.3639 -7.2913 39 1 4.2690 6.6518 -8.1613 40 1 2.8433 5.6544 -7.7854 41 1 7.2623 7.1180 -6.0592 42 1 6.1224 7.2554 -7.4194 43 1 8.1964 10.2866 -7.6872 44 1 3.7804 3.6519 0.1425 45 1 4.9469 2.8182 -0.9297 46 1 5.1494 0.4197 -0.6062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272084938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:36 Heat of formation + Delta-G solvation = 1.822529 kcal Electronic energy + Delta-G solvation = -27161.960922 eV Core-core repulsion = 23281.531021 eV Total energy + Delta-G solvation = -3880.429901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.90425 -40.17358 -38.58548 -35.66006 -34.77891 -34.33241 -33.29169 -31.40937 -30.83370 -29.79857 -28.45587 -26.63615 -26.29169 -24.79681 -22.95810 -22.55630 -21.23597 -20.24724 -19.68738 -19.34760 -18.06022 -17.39658 -16.66821 -16.25342 -16.13125 -15.54229 -15.20888 -14.93506 -14.84063 -14.34560 -14.15219 -13.98326 -13.76212 -13.49572 -13.13556 -12.82785 -12.68495 -12.52483 -12.44758 -12.25235 -12.13186 -11.97435 -11.64091 -11.36911 -11.31212 -11.15889 -11.07336 -10.82830 -10.80159 -10.56184 -10.44002 -10.22648 -9.95993 -9.62467 -9.52482 -8.79942 -8.62522 -7.88409 -7.37304 -6.23799 -4.31337 2.28848 2.66845 3.11236 3.24095 3.27722 3.31648 3.44674 3.66103 3.85224 4.01458 4.07217 4.19354 4.32543 4.42565 4.77783 4.83408 4.95775 5.09096 5.09665 5.10056 5.21896 5.32597 5.40399 5.44099 5.61141 5.69420 5.73680 5.74249 5.87147 5.94639 5.98054 6.06994 6.15173 6.29992 6.49228 6.64044 6.71832 6.94144 7.06334 7.14611 7.21570 7.54665 7.68783 7.90585 7.92735 8.09754 8.60540 8.69637 8.77702 9.34684 10.83282 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.002401 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.873940 B =11661.352656 C =11985.648524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.104 4.104 3 C -0.093 4.093 4 H 0.097 0.903 5 C 0.137 3.863 6 N -0.630 5.630 7 C 0.731 3.269 8 O -0.562 6.562 9 N -0.642 5.642 10 C 0.282 3.718 11 C -0.289 4.289 12 C 0.091 3.909 13 C -0.083 4.083 14 N -0.319 5.319 15 C 0.259 3.741 16 C -0.535 4.535 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.892 5.892 20 Si 0.906 3.094 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.274 1.274 24 N -0.324 5.324 25 C 0.063 3.937 26 C 0.096 3.904 27 H 0.081 0.919 28 O -0.550 6.550 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.404 0.596 37 H 0.160 0.840 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.268 0.732 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 -17.707 15.348 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.112 4.112 4 H 0.115 0.885 5 C 0.014 3.986 6 N -0.370 5.370 7 C 0.433 3.567 8 O -0.437 6.437 9 N -0.292 5.292 10 C 0.029 3.971 11 C -0.320 4.320 12 C -0.040 4.040 13 C -0.142 4.142 14 N -0.101 5.101 15 C 0.142 3.858 16 C -0.574 4.574 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.530 5.530 20 Si 0.733 3.267 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.199 1.199 24 N -0.155 5.155 25 C -0.061 4.061 26 C 0.036 3.964 27 H 0.099 0.901 28 O -0.356 6.356 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.239 0.761 37 H 0.177 0.823 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -9.429 -17.257 14.780 24.600 hybrid contribution 0.297 1.083 0.561 1.255 sum -9.132 -16.174 15.341 24.090 Atomic orbital electron populations 1.21854 0.95765 1.01858 1.01996 1.21314 0.95341 0.94287 1.03210 1.22437 0.93238 0.98055 0.97464 0.88481 1.21834 0.87325 0.93547 0.95917 1.47352 1.21238 1.50307 1.18085 1.15073 0.81979 0.78434 0.81247 1.90878 1.43558 1.67637 1.41608 1.41383 1.20038 1.48007 1.19765 1.18656 0.95024 0.95528 0.87895 1.21230 1.04327 1.11402 0.95030 1.21052 0.88017 0.97292 0.97652 1.20329 1.00433 1.01772 0.91629 1.48955 1.14591 1.34938 1.11608 1.19666 0.88021 0.86585 0.91558 1.21289 1.18031 0.89935 1.28117 0.91838 1.24927 0.94554 0.99701 0.94628 1.69915 1.19857 1.33220 1.30032 0.86414 0.78312 0.83068 0.78869 1.20033 1.20968 1.19931 1.77235 1.21708 1.16251 1.00320 1.23124 0.94210 0.98903 0.89842 1.22937 0.93973 0.84889 0.94636 0.90124 1.86530 1.24955 1.45848 1.78293 0.92594 0.92767 0.92405 0.90697 0.91581 0.90971 0.91399 0.76130 0.82274 0.90451 0.90885 0.90824 0.93066 0.92800 0.92228 0.90291 0.90374 0.77146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.80 37.16 0.36 -0.57 16 2 C -0.10 -0.68 4.82 -26.73 -0.13 -0.81 16 3 C -0.09 -0.63 2.86 -88.79 -0.25 -0.88 16 4 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 5 C 0.14 1.38 5.86 -3.07 -0.02 1.36 16 6 N -0.63 -7.45 3.33 -176.24 -0.59 -8.03 16 7 C 0.73 11.97 8.46 -86.92 -0.74 11.23 16 8 O -0.56 -11.11 13.80 5.29 0.07 -11.04 16 9 N -0.64 -10.76 5.41 -15.51 -0.08 -10.85 16 10 C 0.28 6.00 8.11 -154.37 -1.25 4.75 16 11 C -0.29 -6.23 9.52 -39.84 -0.38 -6.60 16 12 C 0.09 1.99 6.92 -82.28 -0.57 1.42 16 13 C -0.08 -1.47 10.11 36.01 0.36 -1.11 16 14 N -0.32 -7.73 3.59 -58.33 -0.21 -7.94 16 15 C 0.26 6.74 5.99 -5.20 -0.03 6.71 16 16 C -0.54 -14.90 9.39 -34.44 -0.32 -15.22 16 17 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 20 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 24 N -0.32 -7.68 12.59 31.44 0.40 -7.28 16 25 C 0.06 0.48 6.30 -2.53 -0.02 0.46 16 26 C 0.10 0.58 4.16 -24.58 -0.10 0.48 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 O -0.55 -3.94 12.34 -35.23 -0.43 -4.37 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 7.68 -51.93 -0.40 -0.02 16 32 H 0.07 0.62 7.52 -51.93 -0.39 0.23 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.83 7.68 -51.93 -0.40 0.43 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.40 5.53 7.30 -40.82 -0.30 5.23 16 37 H 0.16 3.40 5.91 -52.49 -0.31 3.09 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.07 1.29 7.07 -51.93 -0.37 0.92 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.05 1.38 7.04 -51.93 -0.37 1.02 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.53 7.30 -51.93 -0.38 0.15 16 46 H 0.38 1.40 9.11 45.56 0.42 1.82 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -34.65 377.12 -8.89 -43.54 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.27 Total: 5.62 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -3.18 Total: 2.91 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.25 Total: -58.57 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.36 Total: -15.41 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.65 -8.89 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272084938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.362 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds