Wall clock time and date at job start Tue Mar 31 2020 12:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47137 * 2 1 4 4 H 1.09003 * 110.77909 * 51.76334 * 3 2 1 5 5 C 1.54316 * 110.72220 * 288.51946 * 3 2 1 6 6 N 1.47020 * 107.27568 * 219.44342 * 5 3 2 7 7 C 1.34776 * 125.65281 * 178.97789 * 6 5 3 8 8 O 1.21592 * 119.99934 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00490 * 179.97438 * 7 6 5 10 10 C 1.40193 * 120.00312 * 180.02562 * 9 7 6 11 11 C 1.40404 * 125.97243 * 359.97438 * 10 9 7 12 12 C 1.35238 * 107.86685 * 180.02562 * 11 10 9 13 13 C 1.50702 * 126.06982 * 179.97438 * 12 11 10 14 14 N 1.34963 * 107.85908 * 359.97438 * 12 11 10 15 15 C 1.46497 * 125.97616 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47323 * 90.00345 * 15 14 12 17 17 H 1.08001 * 119.99787 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00103 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00000 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99928 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47345 * 59.99644 * 20 18 16 22 22 H 1.48506 * 109.47356 * 179.97438 * 20 18 16 23 23 H 1.48509 * 109.47109 * 299.99569 * 20 18 16 24 24 N 1.31204 * 125.97245 * 179.69176 * 10 9 7 25 25 C 1.47422 * 108.70191 * 358.94070 * 6 5 3 26 26 C 1.54917 * 104.83074 * 24.12901 * 25 6 5 27 27 H 1.09006 * 111.00207 * 204.91491 * 26 25 6 28 28 O 1.42904 * 111.00339 * 81.10296 * 26 25 6 29 29 H 1.08994 * 109.47124 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46841 * 299.99966 * 1 2 3 31 31 H 1.08999 * 109.46847 * 59.99785 * 1 2 3 32 32 H 1.09002 * 109.47513 * 239.99876 * 2 1 3 33 33 H 1.08999 * 109.46847 * 120.00215 * 2 1 3 34 34 H 1.09000 * 109.88340 * 338.86688 * 5 3 2 35 35 H 1.09005 * 109.88355 * 99.87449 * 5 3 2 36 36 H 0.97002 * 119.99560 * 359.97438 * 9 7 6 37 37 H 1.07997 * 126.06086 * 0.02562 * 11 10 9 38 38 H 1.09001 * 109.47465 * 90.02265 * 13 12 11 39 39 H 1.09001 * 109.46652 * 210.02525 * 13 12 11 40 40 H 1.09002 * 109.46855 * 330.02276 * 13 12 11 41 41 H 1.09006 * 109.47474 * 210.00463 * 15 14 12 42 42 H 1.09004 * 109.47346 * 330.00297 * 15 14 12 43 43 H 0.97008 * 119.99784 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.36873 * 265.28987 * 25 6 5 45 45 H 1.09005 * 110.36491 * 142.96394 * 25 6 5 46 46 H 0.96701 * 113.99862 * 61.45256 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5742 2.0173 0.8005 5 6 1.7898 2.1101 -1.3686 6 7 2.9692 2.9325 -1.6753 7 6 3.1486 3.6623 -2.7941 8 8 2.2907 3.6752 -3.6556 9 7 4.2790 4.3777 -2.9581 10 6 4.4653 5.1373 -4.1216 11 6 3.5619 5.2426 -5.1913 12 6 4.1077 6.0649 -6.1159 13 6 3.4841 6.4612 -7.4293 14 7 5.3100 6.4675 -5.6535 15 6 6.2393 7.3672 -6.3414 16 6 5.9428 8.7916 -5.9489 17 1 5.1418 9.0054 -5.2567 18 6 6.6932 9.8220 -6.4744 19 7 7.6682 9.5617 -7.3178 20 14 6.3251 11.5877 -5.9885 21 1 6.4844 11.7405 -4.5200 22 1 7.2672 12.4997 -6.6856 23 1 4.9313 11.9267 -6.3731 24 7 5.5121 5.8780 -4.3990 25 6 3.9229 2.8274 -0.5560 26 6 3.5860 1.4781 0.1265 27 1 3.8925 1.4822 1.1726 28 8 4.1835 0.3859 -0.5751 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6607 1.3464 -2.1355 35 1 0.9003 2.7381 -1.3176 36 1 4.9633 4.3677 -2.2707 37 1 2.6016 4.7537 -5.2628 38 1 2.8889 7.3639 -7.2913 39 1 4.2690 6.6518 -8.1613 40 1 2.8433 5.6544 -7.7854 41 1 7.2623 7.1180 -6.0592 42 1 6.1224 7.2554 -7.4194 43 1 8.1964 10.2866 -7.6872 44 1 3.7804 3.6519 0.1425 45 1 4.9469 2.8182 -0.9297 46 1 5.1494 0.4197 -0.6062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272084938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:34 Heat of formation + Delta-G solvation = -22.521905 kcal Electronic energy + Delta-G solvation = -27163.016575 eV Core-core repulsion = 23281.531021 eV Total energy + Delta-G solvation = -3881.485555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.37665 -41.37577 -39.58598 -36.46373 -36.18602 -35.42514 -34.90755 -33.00126 -32.62584 -30.59367 -29.20683 -28.46903 -27.88126 -25.81408 -24.74969 -23.20404 -22.49858 -21.26362 -20.95474 -20.63678 -19.11463 -18.77950 -18.29192 -17.58939 -17.20683 -17.07448 -16.48709 -16.22931 -15.89710 -15.65563 -15.46369 -14.87418 -14.82418 -14.60377 -14.28999 -14.15345 -13.84104 -13.72081 -13.63060 -13.51537 -13.27136 -13.16460 -13.05986 -12.86463 -12.66121 -12.57859 -12.24663 -12.14379 -11.84851 -11.72891 -11.57148 -11.39163 -11.36674 -11.26052 -10.90325 -10.73056 -9.84086 -9.56238 -9.08053 -8.32304 -6.50097 0.96953 1.03233 1.38236 1.39815 1.48758 1.61435 1.97294 2.32467 2.34876 2.82957 2.97128 3.20839 3.42709 3.58659 3.83558 3.86118 4.13791 4.19632 4.32046 4.41442 4.45760 4.53837 4.57889 4.60022 4.71170 4.72431 4.77100 4.87795 4.88801 4.93508 4.97087 4.99093 5.08427 5.11397 5.14794 5.24923 5.35707 5.42594 5.53673 5.55042 5.79729 5.81690 5.93147 6.25726 6.57877 6.63588 6.89727 7.05056 7.20563 7.32894 8.73296 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024820 B = 0.002401 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.873940 B =11661.352656 C =11985.648524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.098 4.098 3 C -0.086 4.086 4 H 0.121 0.879 5 C 0.131 3.869 6 N -0.624 5.624 7 C 0.725 3.275 8 O -0.602 6.602 9 N -0.633 5.633 10 C 0.291 3.709 11 C -0.299 4.299 12 C 0.089 3.911 13 C -0.081 4.081 14 N -0.342 5.342 15 C 0.276 3.724 16 C -0.553 4.553 17 H 0.049 0.951 18 C 0.023 3.977 19 N -0.918 5.918 20 Si 0.971 3.029 21 H -0.275 1.275 22 H -0.272 1.272 23 H -0.266 1.266 24 N -0.357 5.357 25 C 0.053 3.947 26 C 0.103 3.897 27 H 0.117 0.883 28 O -0.571 6.571 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.418 0.582 37 H 0.163 0.837 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.025 0.975 42 H 0.053 0.947 43 H 0.274 0.726 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.174 -17.778 17.398 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.136 4.136 3 C -0.105 4.105 4 H 0.139 0.861 5 C 0.009 3.991 6 N -0.361 5.361 7 C 0.426 3.574 8 O -0.481 6.481 9 N -0.285 5.285 10 C 0.036 3.964 11 C -0.330 4.330 12 C -0.041 4.041 13 C -0.139 4.139 14 N -0.125 5.125 15 C 0.157 3.843 16 C -0.591 4.591 17 H 0.067 0.933 18 C -0.178 4.178 19 N -0.556 5.556 20 Si 0.795 3.205 21 H -0.201 1.201 22 H -0.197 1.197 23 H -0.191 1.191 24 N -0.188 5.188 25 C -0.069 4.069 26 C 0.043 3.957 27 H 0.135 0.865 28 O -0.379 6.379 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.256 0.744 37 H 0.180 0.820 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.118 0.882 45 H 0.105 0.895 46 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.044 -17.375 16.890 26.230 hybrid contribution 0.449 0.962 -0.012 1.062 sum -9.595 -16.413 16.877 25.422 Atomic orbital electron populations 1.21852 0.95431 1.02102 1.02027 1.21250 0.95601 0.94040 1.02709 1.22495 0.94316 0.97952 0.95715 0.86107 1.22000 0.86711 0.92876 0.97536 1.47428 1.22608 1.48601 1.17486 1.15283 0.81269 0.78707 0.82129 1.90833 1.44680 1.69040 1.43510 1.41333 1.20838 1.47467 1.18826 1.18930 0.94000 0.94516 0.88909 1.21375 1.04563 1.11717 0.95385 1.21718 0.87081 0.96400 0.98940 1.20469 1.00645 1.03208 0.89609 1.48780 1.15401 1.35985 1.12322 1.19255 0.87165 0.86391 0.91505 1.21399 1.18136 0.91208 1.28402 0.93292 1.25734 0.94101 1.03709 0.94292 1.69999 1.20365 1.34703 1.30503 0.85413 0.78656 0.78053 0.78402 1.20060 1.19696 1.19072 1.77156 1.23132 1.17791 1.00736 1.23534 0.93716 1.00897 0.88792 1.23045 0.93153 0.83457 0.95996 0.86530 1.86506 1.26465 1.46245 1.78723 0.92322 0.91485 0.93583 0.92892 0.90275 0.93016 0.91822 0.74429 0.81992 0.89764 0.91104 0.87699 0.95676 0.92952 0.91719 0.88234 0.89459 0.75481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.80 71.98 0.71 -0.94 16 2 C -0.10 -1.12 4.82 30.59 0.15 -0.97 16 3 C -0.09 -0.95 2.86 -9.61 -0.03 -0.98 16 4 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 5 C 0.13 2.56 5.86 86.73 0.51 3.06 16 6 N -0.62 -14.09 3.33 -829.75 -2.76 -16.85 16 7 C 0.72 23.61 8.46 179.05 1.51 25.13 16 8 O -0.60 -24.21 13.80 -4.00 -0.06 -24.26 16 9 N -0.63 -21.06 5.41 -321.23 -1.74 -22.80 16 10 C 0.29 12.53 8.11 133.32 1.08 13.61 16 11 C -0.30 -13.05 9.52 22.11 0.21 -12.84 16 12 C 0.09 3.91 6.92 41.39 0.29 4.20 16 13 C -0.08 -2.83 10.11 71.24 0.72 -2.11 16 14 N -0.34 -17.04 3.59 -338.45 -1.22 -18.25 16 15 C 0.28 14.79 5.99 85.63 0.51 15.30 16 16 C -0.55 -31.34 9.39 25.60 0.24 -31.10 16 17 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 18 C 0.02 1.25 5.46 84.65 0.46 1.71 16 19 N -0.92 -52.06 13.29 21.45 0.28 -51.78 16 20 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 N -0.36 -17.28 12.59 -54.44 -0.69 -17.97 16 25 C 0.05 0.66 6.30 86.86 0.55 1.21 16 26 C 0.10 0.93 4.16 31.99 0.13 1.06 16 27 H 0.12 0.33 8.14 -2.38 -0.02 0.32 16 28 O -0.57 -6.91 12.34 -148.98 -1.84 -8.75 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.58 7.68 -2.39 -0.02 0.57 16 32 H 0.05 0.85 7.52 -2.39 -0.02 0.83 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 1.22 7.68 -2.39 -0.02 1.20 16 35 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.42 11.11 7.30 -92.71 -0.68 10.44 16 37 H 0.16 7.00 5.91 -2.91 -0.02 6.98 16 38 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.07 2.49 7.07 -2.39 -0.02 2.47 16 40 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.05 2.78 7.04 -2.38 -0.02 2.76 16 43 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 0.96 7.30 -2.38 -0.02 0.95 16 46 H 0.39 2.02 9.11 -74.06 -0.67 1.34 16 Total: -1.00 -76.45 377.12 0.72 -75.74 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.34 Total: 23.28 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 7.04 Total: 16.36 kcal Atomic # 7 Polarization: -121.53 SS G_CDS: -6.11 Total: -127.65 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -1.89 Total: -33.01 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -76.45 0.72 -75.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272084938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.213 kcal (2) G-P(sol) polarization free energy of solvation -76.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds