Wall clock time and date at job start Tue Mar 31 2020 12:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47158 * 2 1 4 4 H 1.09004 * 110.91452 * 302.54698 * 3 2 1 5 5 C 1.54905 * 111.00859 * 66.45294 * 3 2 1 6 6 N 1.47419 * 104.92834 * 155.14142 * 5 3 2 7 7 C 1.34780 * 125.65139 * 155.80015 * 6 5 3 8 8 O 1.21588 * 119.99369 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00233 * 179.97438 * 7 6 5 10 10 C 1.40195 * 120.00121 * 179.97438 * 9 7 6 11 11 C 1.40404 * 125.97074 * 359.97438 * 10 9 7 12 12 C 1.35249 * 107.86694 * 180.02562 * 11 10 9 13 13 C 1.50701 * 126.06565 * 179.97438 * 12 11 10 14 14 N 1.34961 * 107.85796 * 0.02562 * 12 11 10 15 15 C 1.46502 * 125.97219 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46559 * 90.00748 * 15 14 12 17 17 H 1.08001 * 120.00380 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99866 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00002 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00318 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46679 * 89.99908 * 20 18 16 22 22 H 1.48494 * 109.47386 * 209.99961 * 20 18 16 23 23 H 1.48494 * 109.47011 * 330.00513 * 20 18 16 24 24 N 1.31209 * 125.97629 * 179.68872 * 10 9 7 25 25 C 1.47026 * 108.70576 * 335.81449 * 6 5 3 26 26 C 1.54321 * 107.26791 * 1.06162 * 25 6 5 27 27 H 1.08998 * 110.71927 * 140.55469 * 26 25 6 28 28 O 1.42895 * 110.72353 * 263.65175 * 26 25 6 29 29 H 1.09004 * 109.47046 * 300.00427 * 1 2 3 30 30 H 1.08993 * 109.47097 * 59.99877 * 1 2 3 31 31 H 1.08995 * 109.47433 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47339 * 239.99765 * 2 1 3 33 33 H 1.09005 * 109.47071 * 119.99692 * 2 1 3 34 34 H 1.09002 * 110.36692 * 36.24515 * 5 3 2 35 35 H 1.08995 * 110.36664 * 274.03317 * 5 3 2 36 36 H 0.97000 * 120.00439 * 359.97438 * 9 7 6 37 37 H 1.08002 * 126.06505 * 0.02562 * 11 10 9 38 38 H 1.09005 * 109.46831 * 90.03081 * 13 12 11 39 39 H 1.08997 * 109.46921 * 210.02492 * 13 12 11 40 40 H 1.08994 * 109.47509 * 330.03084 * 13 12 11 41 41 H 1.08997 * 109.46903 * 209.99792 * 15 14 12 42 42 H 1.08988 * 109.47222 * 330.00715 * 15 14 12 43 43 H 0.96999 * 120.00405 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.88266 * 120.47537 * 25 6 5 45 45 H 1.09000 * 109.88221 * 241.64354 * 25 6 5 46 46 H 0.96705 * 114.00065 * 298.54600 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6532 1.9920 -0.8583 5 6 1.6804 2.1587 1.3257 6 7 2.6865 3.2271 1.4651 7 6 2.5331 4.3629 2.1742 8 8 1.4933 4.5727 2.7685 9 7 3.5321 5.2661 2.2246 10 6 3.3723 6.4478 2.9618 11 6 2.2306 6.8169 3.6909 12 6 2.4713 8.0214 4.2571 13 6 1.5184 8.7985 5.1284 14 7 3.7159 8.4042 3.9024 15 6 4.3791 9.6490 4.2985 16 6 5.1334 9.4289 5.5845 17 1 5.1197 8.4591 6.0594 18 6 5.8409 10.4658 6.1547 19 7 5.8572 11.6470 5.5767 20 14 6.7753 10.1934 7.7492 21 1 8.1582 9.7476 7.4424 22 1 6.8236 11.4631 8.5178 23 1 6.0871 9.1530 8.5546 24 7 4.2653 7.3998 3.0953 25 6 3.8851 2.8486 0.7023 26 6 3.5934 1.4873 0.0365 27 1 4.0037 1.4559 -0.9728 28 8 4.1148 0.4163 0.8258 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.7468 1.4634 2.1625 35 1 0.6793 2.5857 1.2667 36 1 4.3618 5.0986 1.7509 37 1 1.3215 6.2412 3.7833 38 1 1.6691 8.5189 6.1711 39 1 1.7041 9.8658 5.0080 40 1 0.4928 8.5729 4.8364 41 1 5.0748 9.9545 3.5170 42 1 3.6315 10.4284 4.4446 43 1 6.3552 12.3765 5.9776 44 1 4.0903 3.5985 -0.0617 45 1 4.7386 2.7575 1.3740 46 1 5.0746 0.4440 0.9414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272084939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:40 Heat of formation + Delta-G solvation = 0.551474 kcal Electronic energy + Delta-G solvation = -27104.524098 eV Core-core repulsion = 23224.039080 eV Total energy + Delta-G solvation = -3880.485018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.90622 -40.17270 -38.61173 -35.70360 -34.79368 -34.33091 -33.29665 -31.41441 -30.83630 -29.75830 -28.44160 -26.64459 -26.29877 -24.84105 -22.97295 -22.56251 -21.16082 -20.33355 -19.68250 -19.34002 -18.12519 -17.40670 -16.67213 -16.16975 -16.00805 -15.53413 -15.29269 -14.93685 -14.91819 -14.38898 -14.20970 -13.99700 -13.75063 -13.40730 -13.25409 -12.93641 -12.62416 -12.47191 -12.45384 -12.25536 -12.13161 -12.03713 -11.65853 -11.37456 -11.21351 -11.14309 -11.07567 -10.82666 -10.80690 -10.58291 -10.43099 -10.23373 -9.97034 -9.63695 -9.51779 -8.84793 -8.63237 -7.89232 -7.38265 -6.24258 -4.31713 2.27773 2.65520 3.09964 3.22249 3.28364 3.32729 3.43773 3.64613 3.84174 4.00997 4.05470 4.23809 4.32960 4.44328 4.78609 4.83431 4.99551 5.03006 5.09345 5.11670 5.20059 5.35409 5.42189 5.46953 5.59377 5.70440 5.71542 5.73333 5.87790 5.92610 5.96318 6.08264 6.14601 6.29165 6.48567 6.63187 6.71348 6.93432 7.05849 7.14066 7.17937 7.53703 7.68637 7.89886 7.91831 8.09052 8.58645 8.69117 8.77460 9.34450 10.82889 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023454 B = 0.002421 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.538371 B =11561.401374 C =12170.311424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.103 4.103 3 C -0.094 4.094 4 H 0.096 0.904 5 C 0.135 3.865 6 N -0.633 5.633 7 C 0.731 3.269 8 O -0.562 6.562 9 N -0.641 5.641 10 C 0.282 3.718 11 C -0.289 4.289 12 C 0.091 3.909 13 C -0.083 4.083 14 N -0.318 5.318 15 C 0.259 3.741 16 C -0.534 4.534 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.892 5.892 20 Si 0.906 3.094 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.324 5.324 25 C 0.064 3.936 26 C 0.098 3.902 27 H 0.080 0.920 28 O -0.553 6.553 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.404 0.596 37 H 0.160 0.840 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.268 0.732 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 -20.644 -12.931 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.141 4.141 3 C -0.114 4.114 4 H 0.114 0.886 5 C 0.012 3.988 6 N -0.373 5.373 7 C 0.432 3.568 8 O -0.437 6.437 9 N -0.291 5.291 10 C 0.028 3.972 11 C -0.320 4.320 12 C -0.040 4.040 13 C -0.142 4.142 14 N -0.101 5.101 15 C 0.141 3.859 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.530 5.530 20 Si 0.733 3.267 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.197 1.197 24 N -0.155 5.155 25 C -0.060 4.060 26 C 0.038 3.962 27 H 0.097 0.903 28 O -0.359 6.359 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.239 0.761 37 H 0.177 0.823 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.882 -19.878 -12.676 24.560 hybrid contribution 1.155 -0.132 0.720 1.367 sum -5.727 -20.010 -11.957 24.004 Atomic orbital electron populations 1.21846 0.95703 1.01829 1.02104 1.21260 0.95441 0.94243 1.03178 1.22608 0.92616 0.97795 0.98339 0.88565 1.22143 0.92255 0.87719 0.96664 1.47397 1.17565 1.19272 1.53040 1.15097 0.83360 0.78654 0.79646 1.90877 1.27587 1.76838 1.48380 1.41379 1.17935 1.17362 1.52447 1.18661 0.94366 0.87538 0.96589 1.21231 1.01982 0.98753 1.10025 1.21056 0.88186 0.95749 0.99017 1.20328 0.96142 0.99451 0.98243 1.48961 1.09865 1.16135 1.35116 1.19673 0.93503 0.76104 0.96587 1.21329 1.31276 0.97769 1.06933 0.91780 1.24928 0.96106 0.94703 0.98089 1.69919 1.41677 1.01677 1.39760 0.86356 0.80130 0.77725 0.82484 1.20374 1.20878 1.19665 1.77239 1.20592 0.99182 1.18469 1.22880 0.89278 0.97857 0.96011 1.22806 0.95142 0.84686 0.93522 0.90264 1.86519 1.27108 1.48259 1.74048 0.92357 0.92742 0.92592 0.91638 0.90554 0.91084 0.90089 0.76092 0.82265 0.90440 0.90884 0.90824 0.93062 0.92778 0.92282 0.90620 0.90803 0.77068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.76 37.16 0.36 -0.59 16 2 C -0.10 -0.66 5.08 -26.73 -0.14 -0.80 16 3 C -0.09 -0.66 3.01 -88.31 -0.27 -0.93 16 4 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 5 C 0.13 1.36 5.55 -2.53 -0.01 1.34 16 6 N -0.63 -7.45 3.33 -176.25 -0.59 -8.04 16 7 C 0.73 11.86 8.46 -86.92 -0.74 11.13 16 8 O -0.56 -10.97 13.72 5.29 0.07 -10.90 16 9 N -0.64 -10.72 5.41 -15.51 -0.08 -10.81 16 10 C 0.28 5.97 8.11 -154.36 -1.25 4.72 16 11 C -0.29 -6.19 9.52 -39.83 -0.38 -6.57 16 12 C 0.09 1.98 6.92 -82.28 -0.57 1.41 16 13 C -0.08 -1.47 10.11 36.01 0.36 -1.10 16 14 N -0.32 -7.71 3.59 -58.33 -0.21 -7.92 16 15 C 0.26 6.72 5.99 -5.19 -0.03 6.69 16 16 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 17 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 20 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 N -0.32 -7.65 12.59 31.44 0.40 -7.26 16 25 C 0.06 0.49 5.91 -3.06 -0.02 0.48 16 26 C 0.10 0.60 4.09 -24.74 -0.10 0.50 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 O -0.55 -3.58 12.13 -35.23 -0.43 -4.01 16 29 H 0.06 0.39 7.45 -51.93 -0.39 0.00 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.59 7.44 -51.93 -0.39 0.20 16 34 H 0.07 0.76 8.00 -51.93 -0.42 0.35 16 35 H 0.08 0.88 7.96 -51.93 -0.41 0.46 16 36 H 0.40 5.55 7.81 -40.82 -0.32 5.23 16 37 H 0.16 3.38 5.91 -52.49 -0.31 3.07 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.05 1.39 7.04 -51.94 -0.37 1.02 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 46 H 0.38 1.07 9.09 45.56 0.41 1.49 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -34.38 377.51 -8.95 -43.33 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.32 Total: 5.36 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -3.20 Total: 2.76 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.25 Total: -58.49 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.35 Total: -14.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.38 -8.95 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272084939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.882 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds