Wall clock time and date at job start Tue Mar 31 2020 12:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46866 * 2 1 4 4 H 1.09001 * 110.77824 * 303.21069 * 3 2 1 5 5 C 1.54325 * 110.72433 * 66.45225 * 3 2 1 6 6 N 1.47013 * 107.27270 * 140.55575 * 5 3 2 7 7 C 1.34783 * 125.64810 * 181.02234 * 6 5 3 8 8 O 1.21589 * 119.99917 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00162 * 180.02562 * 7 6 5 10 10 C 1.40194 * 120.00016 * 180.02562 * 9 7 6 11 11 C 1.40395 * 125.97373 * 0.02562 * 10 9 7 12 12 C 1.35243 * 107.86909 * 179.75947 * 11 10 9 13 13 C 1.50700 * 126.07286 * 180.25582 * 12 11 10 14 14 N 1.34973 * 107.85831 * 0.41942 * 12 11 10 15 15 C 1.46491 * 125.97659 * 179.84189 * 14 12 11 16 16 C 1.50702 * 109.46957 * 269.71271 * 15 14 12 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 N 1.31213 * 125.96930 * 180.02562 * 10 9 7 25 25 C 1.47427 * 108.70697 * 1.29032 * 6 5 3 26 26 C 1.55132 * 104.71686 * 335.54968 * 25 6 5 27 27 H 1.09001 * 111.22745 * 279.17794 * 26 25 6 28 28 O 1.42898 * 110.90410 * 155.27299 * 26 25 6 29 29 H 1.09000 * 109.46486 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46872 * 299.99919 * 1 2 3 31 31 H 1.09001 * 109.46969 * 60.00315 * 1 2 3 32 32 H 1.08992 * 109.47305 * 239.99804 * 2 1 3 33 33 H 1.08997 * 109.47142 * 119.99199 * 2 1 3 34 34 H 1.09001 * 109.88101 * 21.13851 * 5 3 2 35 35 H 1.09004 * 110.00877 * 260.04746 * 5 3 2 36 36 H 0.97003 * 119.99670 * 359.97438 * 9 7 6 37 37 H 1.07997 * 126.06624 * 0.02562 * 11 10 9 38 38 H 1.09001 * 109.47342 * 270.18770 * 13 12 11 39 39 H 1.08994 * 109.47244 * 30.19032 * 13 12 11 40 40 H 1.09004 * 109.46892 * 150.19494 * 13 12 11 41 41 H 1.09004 * 109.47166 * 149.71537 * 15 14 12 42 42 H 1.08994 * 109.47507 * 29.71244 * 15 14 12 43 43 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 44 44 H 1.08995 * 110.36752 * 94.48106 * 25 6 5 45 45 H 1.09000 * 110.36348 * 216.80942 * 25 6 5 46 46 H 0.96704 * 113.99876 * 67.98144 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6426 1.9931 -0.8527 5 6 1.6783 2.1496 1.3232 6 7 2.8293 2.9820 1.7021 7 6 2.9165 3.7444 2.8101 8 8 1.9903 3.7815 3.5970 9 7 4.0303 4.4658 3.0459 10 6 4.1212 5.2584 4.1987 11 6 3.1331 5.3929 5.1870 12 6 3.6038 6.2382 6.1320 13 6 2.8774 6.6658 7.3812 14 7 4.8382 6.6337 5.7558 15 6 5.7081 7.5549 6.4910 16 6 5.4454 8.9667 6.0338 17 1 4.7043 9.1585 5.2720 18 6 6.1469 10.0141 6.5925 19 7 5.9138 11.2466 6.1974 20 14 7.4283 9.6823 7.9105 21 1 8.7507 9.4634 7.2713 22 1 7.5085 10.8478 8.8274 23 1 7.0444 8.4721 8.6808 24 7 5.1445 6.0041 4.5426 25 6 3.8699 2.8498 0.6662 26 6 3.5912 1.4764 0.0007 27 1 3.9996 0.6595 0.5956 28 8 4.1048 1.4423 -1.3324 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.4855 1.4085 2.0989 35 1 0.7977 2.7765 1.1825 36 1 4.7693 4.4359 2.4183 37 1 2.1700 4.9044 5.1938 38 1 2.2930 7.5620 7.1730 39 1 2.2124 5.8659 7.7067 40 1 3.6015 6.8790 8.1676 41 1 6.7507 7.2996 6.3013 42 1 5.5029 7.4746 7.5585 43 1 6.4075 11.9833 6.5901 44 1 3.7816 3.6532 -0.0650 45 1 4.8606 2.8564 1.1207 46 1 5.0703 1.4616 -1.3825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272084940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:43 Heat of formation + Delta-G solvation = 6.054055 kcal Electronic energy + Delta-G solvation = -27040.352036 eV Core-core repulsion = 23160.105628 eV Total energy + Delta-G solvation = -3880.246408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98259 -40.23483 -38.63320 -36.05726 -34.88005 -34.41359 -33.24564 -31.54494 -31.11293 -29.75782 -28.42881 -27.08137 -26.39264 -24.90114 -22.71393 -22.48060 -21.32033 -20.44551 -19.73372 -19.34682 -18.08752 -17.57248 -17.11661 -16.58717 -15.96130 -15.68744 -15.29249 -15.09831 -14.56956 -14.56276 -14.15451 -13.97571 -13.80408 -13.51279 -13.29621 -12.96540 -12.94049 -12.61284 -12.51476 -12.39336 -12.28981 -12.09872 -11.89144 -11.57763 -11.45451 -11.21693 -11.08583 -10.90206 -10.80475 -10.60218 -10.57851 -10.07375 -9.96432 -9.73201 -9.57930 -8.91838 -8.78153 -7.98021 -7.44066 -6.26030 -4.28958 2.16586 2.55945 3.01951 3.15032 3.19887 3.21439 3.28556 3.66131 3.76699 3.93107 4.05193 4.16168 4.21415 4.43211 4.69728 4.76574 4.87588 5.02398 5.03202 5.10624 5.15731 5.31050 5.35950 5.41115 5.51595 5.62246 5.62746 5.66200 5.76909 5.83965 5.89611 5.93499 6.05501 6.21443 6.36970 6.47750 6.51976 6.59516 6.79719 6.95894 7.12226 7.29217 7.44387 7.81047 7.87222 8.31926 8.51156 8.59314 8.79777 9.29120 10.86526 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.002407 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.187021 B =11627.806770 C =12284.321162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.092 4.092 4 H 0.096 0.904 5 C 0.134 3.866 6 N -0.633 5.633 7 C 0.732 3.268 8 O -0.560 6.560 9 N -0.641 5.641 10 C 0.286 3.714 11 C -0.286 4.286 12 C 0.095 3.905 13 C -0.085 4.085 14 N -0.318 5.318 15 C 0.232 3.768 16 C -0.540 4.540 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.887 5.887 20 Si 0.874 3.126 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.264 1.264 24 N -0.321 5.321 25 C 0.064 3.936 26 C 0.097 3.903 27 H 0.078 0.922 28 O -0.554 6.554 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.405 0.595 37 H 0.162 0.838 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.269 0.731 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.894 -22.585 -11.050 25.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.111 4.111 4 H 0.115 0.885 5 C 0.011 3.989 6 N -0.374 5.374 7 C 0.434 3.566 8 O -0.434 6.434 9 N -0.291 5.291 10 C 0.032 3.968 11 C -0.317 4.317 12 C -0.036 4.036 13 C -0.143 4.143 14 N -0.100 5.100 15 C 0.113 3.887 16 C -0.578 4.578 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.524 5.524 20 Si 0.700 3.300 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.189 1.189 24 N -0.152 5.152 25 C -0.060 4.060 26 C 0.037 3.963 27 H 0.096 0.904 28 O -0.359 6.359 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.241 0.759 37 H 0.180 0.820 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -5.920 -21.858 -10.772 25.077 hybrid contribution 1.117 -0.020 0.505 1.226 sum -4.803 -21.877 -10.268 24.640 Atomic orbital electron populations 1.21816 0.95245 1.01977 1.02305 1.21511 0.96412 0.94398 1.02654 1.22321 0.93362 0.97540 0.97904 0.88536 1.21896 0.88479 0.93273 0.95208 1.47285 1.19209 1.48960 1.21925 1.15060 0.82479 0.78396 0.80709 1.90884 1.38269 1.68000 1.46289 1.41387 1.18310 1.46288 1.23160 1.18639 0.94774 0.94896 0.88451 1.21241 1.03331 1.10713 0.96369 1.21052 0.87405 0.96966 0.98142 1.20353 0.99463 1.01957 0.92533 1.48485 1.12708 1.33858 1.14948 1.19991 0.89811 0.88117 0.90778 1.21181 1.24435 0.87862 1.24333 0.90116 1.24816 0.96536 0.94761 0.96473 1.69874 1.41254 0.98799 1.42438 0.86886 0.82505 0.78543 0.82035 1.19658 1.20549 1.18887 1.77248 1.21825 1.15095 1.00993 1.23097 0.92224 0.99199 0.91446 1.23019 0.94754 0.95017 0.83553 0.90408 1.86530 1.26620 1.96926 1.25790 0.92491 0.92255 0.92475 0.91000 0.91571 0.90801 0.90826 0.75944 0.82048 0.90068 0.90634 0.91130 0.93705 0.93218 0.92133 0.90163 0.90496 0.76925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.76 37.16 0.36 -0.51 16 2 C -0.11 -0.65 5.32 -26.73 -0.14 -0.80 16 3 C -0.09 -0.65 2.72 -88.78 -0.24 -0.89 16 4 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 5 C 0.13 1.25 5.61 -3.07 -0.02 1.23 16 6 N -0.63 -7.15 3.32 -176.10 -0.59 -7.74 16 7 C 0.73 11.47 8.46 -86.91 -0.74 10.74 16 8 O -0.56 -10.56 13.80 5.29 0.07 -10.49 16 9 N -0.64 -10.40 5.41 -15.51 -0.08 -10.49 16 10 C 0.29 5.90 8.11 -154.36 -1.25 4.65 16 11 C -0.29 -5.95 9.52 -39.84 -0.38 -6.32 16 12 C 0.10 2.00 6.92 -82.28 -0.57 1.43 16 13 C -0.08 -1.43 10.11 36.01 0.36 -1.07 16 14 N -0.32 -7.45 3.59 -58.33 -0.21 -7.65 16 15 C 0.23 5.61 5.06 -5.20 -0.03 5.59 16 16 C -0.54 -15.19 9.94 -34.44 -0.34 -15.53 16 17 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 20 Si 0.87 20.18 27.47 -169.99 -4.67 15.51 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 24 N -0.32 -7.38 12.59 31.44 0.40 -6.98 16 25 C 0.06 0.51 6.32 -2.41 -0.02 0.49 16 26 C 0.10 0.63 3.89 -24.46 -0.10 0.53 16 27 H 0.08 0.45 8.05 -51.93 -0.42 0.03 16 28 O -0.55 -3.45 13.47 -35.23 -0.47 -3.93 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.35 7.49 -51.93 -0.39 -0.04 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.37 8.06 -51.93 -0.42 -0.04 16 34 H 0.07 0.69 7.76 -51.93 -0.40 0.29 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.41 5.39 7.30 -40.82 -0.30 5.09 16 37 H 0.16 3.31 5.91 -52.49 -0.31 3.00 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.15 7.06 -51.93 -0.37 0.78 16 41 H 0.05 1.07 7.58 -51.93 -0.39 0.68 16 42 H 0.05 1.12 6.08 -51.93 -0.32 0.80 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.51 7.29 -51.93 -0.38 0.13 16 46 H 0.38 0.85 9.12 45.56 0.42 1.26 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -35.33 374.76 -8.57 -43.90 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.25 Total: 6.23 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -3.19 Total: 1.63 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.29 Total: -58.50 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.40 Total: -14.41 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.33 -8.57 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272084940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.955 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds