Wall clock time and date at job start Tue Mar 31 2020 12:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46866 * 2 1 4 4 H 1.09001 * 110.77824 * 303.21069 * 3 2 1 5 5 C 1.54325 * 110.72433 * 66.45225 * 3 2 1 6 6 N 1.47013 * 107.27270 * 140.55575 * 5 3 2 7 7 C 1.34783 * 125.64810 * 181.02234 * 6 5 3 8 8 O 1.21589 * 119.99917 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00162 * 180.02562 * 7 6 5 10 10 C 1.40194 * 120.00016 * 180.02562 * 9 7 6 11 11 C 1.40395 * 125.97373 * 0.02562 * 10 9 7 12 12 C 1.35243 * 107.86909 * 179.75947 * 11 10 9 13 13 C 1.50700 * 126.07286 * 180.25582 * 12 11 10 14 14 N 1.34973 * 107.85831 * 0.41942 * 12 11 10 15 15 C 1.46491 * 125.97659 * 179.84189 * 14 12 11 16 16 C 1.50702 * 109.46957 * 269.71271 * 15 14 12 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 N 1.31213 * 125.96930 * 180.02562 * 10 9 7 25 25 C 1.47427 * 108.70697 * 1.29032 * 6 5 3 26 26 C 1.55132 * 104.71686 * 335.54968 * 25 6 5 27 27 H 1.09001 * 111.22745 * 279.17794 * 26 25 6 28 28 O 1.42898 * 110.90410 * 155.27299 * 26 25 6 29 29 H 1.09000 * 109.46486 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46872 * 299.99919 * 1 2 3 31 31 H 1.09001 * 109.46969 * 60.00315 * 1 2 3 32 32 H 1.08992 * 109.47305 * 239.99804 * 2 1 3 33 33 H 1.08997 * 109.47142 * 119.99199 * 2 1 3 34 34 H 1.09001 * 109.88101 * 21.13851 * 5 3 2 35 35 H 1.09004 * 110.00877 * 260.04746 * 5 3 2 36 36 H 0.97003 * 119.99670 * 359.97438 * 9 7 6 37 37 H 1.07997 * 126.06624 * 0.02562 * 11 10 9 38 38 H 1.09001 * 109.47342 * 270.18770 * 13 12 11 39 39 H 1.08994 * 109.47244 * 30.19032 * 13 12 11 40 40 H 1.09004 * 109.46892 * 150.19494 * 13 12 11 41 41 H 1.09004 * 109.47166 * 149.71537 * 15 14 12 42 42 H 1.08994 * 109.47507 * 29.71244 * 15 14 12 43 43 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 44 44 H 1.08995 * 110.36752 * 94.48106 * 25 6 5 45 45 H 1.09000 * 110.36348 * 216.80942 * 25 6 5 46 46 H 0.96704 * 113.99876 * 67.98144 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6426 1.9931 -0.8527 5 6 1.6783 2.1496 1.3232 6 7 2.8293 2.9820 1.7021 7 6 2.9165 3.7444 2.8101 8 8 1.9903 3.7815 3.5970 9 7 4.0303 4.4658 3.0459 10 6 4.1212 5.2584 4.1987 11 6 3.1331 5.3929 5.1870 12 6 3.6038 6.2382 6.1320 13 6 2.8774 6.6658 7.3812 14 7 4.8382 6.6337 5.7558 15 6 5.7081 7.5549 6.4910 16 6 5.4454 8.9667 6.0338 17 1 4.7043 9.1585 5.2720 18 6 6.1469 10.0141 6.5925 19 7 5.9138 11.2466 6.1974 20 14 7.4283 9.6823 7.9105 21 1 8.7507 9.4634 7.2713 22 1 7.5085 10.8478 8.8274 23 1 7.0444 8.4721 8.6808 24 7 5.1445 6.0041 4.5426 25 6 3.8699 2.8498 0.6662 26 6 3.5912 1.4764 0.0007 27 1 3.9996 0.6595 0.5956 28 8 4.1048 1.4423 -1.3324 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.4855 1.4085 2.0989 35 1 0.7977 2.7765 1.1825 36 1 4.7693 4.4359 2.4183 37 1 2.1700 4.9044 5.1938 38 1 2.2930 7.5620 7.1730 39 1 2.2124 5.8659 7.7067 40 1 3.6015 6.8790 8.1676 41 1 6.7507 7.2996 6.3013 42 1 5.5029 7.4746 7.5585 43 1 6.4075 11.9833 6.5901 44 1 3.7816 3.6532 -0.0650 45 1 4.8606 2.8564 1.1207 46 1 5.0703 1.4616 -1.3825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272084940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:42 Heat of formation + Delta-G solvation = -19.982257 kcal Electronic energy + Delta-G solvation = -27041.481055 eV Core-core repulsion = 23160.105628 eV Total energy + Delta-G solvation = -3881.375427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.41332 -41.40467 -39.58339 -36.71229 -36.32895 -35.40580 -34.93137 -33.16649 -32.81061 -30.55218 -29.24061 -28.76491 -27.90035 -25.81561 -24.43344 -23.17880 -22.55758 -21.25987 -21.12676 -20.66310 -19.23499 -18.99600 -18.44095 -17.83721 -17.27220 -16.96766 -16.54699 -16.18994 -16.05084 -15.59755 -15.35941 -14.98111 -14.78122 -14.63792 -14.48269 -14.29674 -13.90961 -13.76703 -13.69495 -13.64550 -13.49654 -13.23853 -13.08587 -12.89365 -12.66213 -12.57057 -12.27072 -11.95842 -11.82853 -11.65762 -11.57428 -11.48426 -11.42960 -11.30404 -10.97863 -10.89636 -9.92332 -9.59422 -9.06796 -8.40168 -6.51385 0.91144 0.98733 1.35725 1.37933 1.47582 1.58132 1.89700 2.26921 2.29106 2.70988 2.92308 3.20018 3.39863 3.45994 3.80159 3.90829 4.08138 4.14914 4.22325 4.30559 4.37223 4.49084 4.50699 4.54415 4.57132 4.69824 4.76800 4.79445 4.80529 4.83298 4.87700 4.97700 5.01941 5.10756 5.12060 5.21049 5.23173 5.30255 5.38352 5.47002 5.73984 5.85772 5.99308 6.36528 6.50778 6.54545 6.85182 6.99780 7.12365 7.28066 8.76561 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.002407 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.187021 B =11627.806770 C =12284.321162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.106 4.106 3 C -0.086 4.086 4 H 0.093 0.907 5 C 0.131 3.869 6 N -0.626 5.626 7 C 0.728 3.272 8 O -0.596 6.596 9 N -0.634 5.634 10 C 0.293 3.707 11 C -0.298 4.298 12 C 0.092 3.908 13 C -0.084 4.084 14 N -0.342 5.342 15 C 0.241 3.759 16 C -0.550 4.550 17 H 0.022 0.978 18 C 0.020 3.980 19 N -0.938 5.938 20 Si 0.952 3.048 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.233 1.233 24 N -0.355 5.355 25 C 0.058 3.942 26 C 0.108 3.892 27 H 0.092 0.908 28 O -0.563 6.563 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.418 0.582 37 H 0.165 0.835 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.273 0.727 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 -24.919 -10.527 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.144 4.144 3 C -0.105 4.105 4 H 0.111 0.889 5 C 0.008 3.992 6 N -0.365 5.365 7 C 0.429 3.571 8 O -0.474 6.474 9 N -0.286 5.286 10 C 0.037 3.963 11 C -0.329 4.329 12 C -0.038 4.038 13 C -0.142 4.142 14 N -0.125 5.125 15 C 0.122 3.878 16 C -0.588 4.588 17 H 0.041 0.959 18 C -0.179 4.179 19 N -0.576 5.576 20 Si 0.773 3.227 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.156 1.156 24 N -0.186 5.186 25 C -0.065 4.065 26 C 0.048 3.952 27 H 0.110 0.890 28 O -0.371 6.371 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.256 0.744 37 H 0.182 0.818 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.111 0.889 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -4.938 -24.246 -10.320 26.809 hybrid contribution 0.693 0.674 0.141 0.977 sum -4.245 -23.572 -10.178 26.024 Atomic orbital electron populations 1.21824 0.95230 1.02387 1.01986 1.21479 0.96399 0.93427 1.03115 1.22275 0.94118 0.97956 0.96122 0.88909 1.22063 0.87644 0.92948 0.96507 1.47307 1.20683 1.47492 1.20971 1.15223 0.81741 0.78618 0.81514 1.90844 1.39306 1.69254 1.47971 1.41361 1.19212 1.45767 1.22224 1.18927 0.93978 0.94067 0.89282 1.21407 1.03555 1.11162 0.96736 1.21743 0.86685 0.96096 0.99301 1.20512 0.99791 1.02931 0.90963 1.48429 1.13673 1.34776 1.15586 1.19799 0.90301 0.85788 0.91960 1.21250 1.23457 0.90766 1.23358 0.95944 1.25856 0.98919 0.94001 0.99165 1.70037 1.42967 1.00231 1.44394 0.85660 0.78734 0.79721 0.78564 1.19008 1.19974 1.15577 1.77159 1.23245 1.16523 1.01649 1.23369 0.91962 1.00470 0.90682 1.22905 0.94200 0.94234 0.83854 0.88999 1.86500 1.28540 1.96786 1.25289 0.91739 0.92923 0.92480 0.90437 0.91098 0.90764 0.91697 0.74379 0.81762 0.90394 0.87370 0.90229 0.93256 0.90696 0.91740 0.90053 0.88914 0.74793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.76 71.98 0.70 -0.85 16 2 C -0.11 -1.04 5.32 30.60 0.16 -0.87 16 3 C -0.09 -1.06 2.72 -9.60 -0.03 -1.09 16 4 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 5 C 0.13 2.32 5.61 86.73 0.49 2.81 16 6 N -0.63 -13.56 3.32 -829.31 -2.76 -16.32 16 7 C 0.73 22.60 8.46 179.05 1.51 24.12 16 8 O -0.60 -22.65 13.80 -4.00 -0.06 -22.70 16 9 N -0.63 -20.41 5.41 -321.23 -1.74 -22.15 16 10 C 0.29 12.16 8.11 133.31 1.08 13.24 16 11 C -0.30 -12.46 9.52 22.10 0.21 -12.25 16 12 C 0.09 3.84 6.92 41.38 0.29 4.12 16 13 C -0.08 -2.73 10.11 71.24 0.72 -2.01 16 14 N -0.34 -16.11 3.59 -338.46 -1.22 -17.32 16 15 C 0.24 11.53 5.06 85.64 0.43 11.96 16 16 C -0.55 -31.77 9.94 25.60 0.25 -31.51 16 17 H 0.02 1.51 8.06 -2.91 -0.02 1.48 16 18 C 0.02 1.14 5.47 84.66 0.46 1.60 16 19 N -0.94 -57.33 13.96 21.45 0.30 -57.03 16 20 Si 0.95 40.78 27.47 68.60 1.88 42.66 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.23 -8.75 6.54 99.48 0.65 -8.10 16 24 N -0.36 -16.52 12.59 -54.44 -0.69 -17.20 16 25 C 0.06 0.81 6.32 86.93 0.55 1.36 16 26 C 0.11 1.14 3.89 32.07 0.12 1.27 16 27 H 0.09 0.77 8.05 -2.39 -0.02 0.75 16 28 O -0.56 -5.52 13.47 -148.98 -2.01 -7.53 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.59 7.49 -2.39 -0.02 0.57 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.65 8.06 -2.39 -0.02 0.63 16 34 H 0.07 1.33 7.76 -2.39 -0.02 1.32 16 35 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.42 10.84 7.30 -92.71 -0.68 10.17 16 37 H 0.17 6.78 5.91 -2.91 -0.02 6.76 16 38 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.08 2.43 7.06 -2.39 -0.02 2.41 16 41 H 0.05 2.30 7.58 -2.38 -0.02 2.28 16 42 H 0.08 3.19 6.08 -2.39 -0.01 3.17 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.09 1.03 7.29 -2.39 -0.02 1.01 16 46 H 0.40 0.63 9.12 -74.05 -0.68 -0.05 16 Total: -1.00 -79.40 374.76 0.29 -79.11 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -0.40 Total: 26.58 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 6.96 Total: 11.91 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -6.10 Total: -130.03 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -2.06 Total: -30.23 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.88 Total: 42.66 kcal Total: -79.40 0.29 -79.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272084940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.125 kcal (2) G-P(sol) polarization free energy of solvation -79.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds