Wall clock time and date at job start Tue Mar 31 2020 12:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 H 1.08993 * 110.37137 * 55.73354 * 3 2 1 5 5 C 1.54005 * 110.32503 * 293.54657 * 3 2 1 6 6 N 1.47485 * 107.24392 * 242.31631 * 5 3 2 7 7 C 1.34786 * 127.03052 * 154.61643 * 6 5 3 8 8 O 1.21590 * 119.99872 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99862 * 180.02562 * 7 6 5 10 10 C 1.40196 * 120.00225 * 180.02562 * 9 7 6 11 11 C 1.40403 * 125.97144 * 359.97438 * 10 9 7 12 12 C 1.35235 * 107.86977 * 180.02562 * 11 10 9 13 13 C 1.50703 * 126.07089 * 179.97438 * 12 11 10 14 14 N 1.34961 * 107.86034 * 0.02562 * 12 11 10 15 15 C 1.46499 * 125.97825 * 180.02562 * 14 12 11 16 16 C 1.50692 * 109.47602 * 89.99221 * 15 14 12 17 17 H 1.08000 * 120.00094 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00166 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00132 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00028 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47176 * 89.99800 * 20 18 16 22 22 H 1.48495 * 109.47291 * 210.00135 * 20 18 16 23 23 H 1.48500 * 109.47084 * 329.99893 * 20 18 16 24 24 N 1.31203 * 125.97507 * 179.68657 * 10 9 7 25 25 C 1.48377 * 105.79701 * 334.78511 * 6 5 3 26 26 C 1.54616 * 110.32548 * 177.92609 * 3 2 1 27 27 H 1.09002 * 110.74101 * 22.40549 * 26 3 2 28 28 O 1.42898 * 110.74039 * 259.25965 * 26 3 2 29 29 H 1.09001 * 109.47176 * 59.99915 * 1 2 3 30 30 H 1.09001 * 109.47335 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47167 * 300.00557 * 1 2 3 32 32 H 1.09001 * 109.46952 * 240.00196 * 2 1 3 33 33 H 1.09001 * 109.47176 * 120.00085 * 2 1 3 34 34 H 1.09002 * 109.91501 * 1.77607 * 5 3 2 35 35 H 1.08999 * 109.90987 * 122.86218 * 5 3 2 36 36 H 0.97006 * 120.00262 * 359.97438 * 9 7 6 37 37 H 1.08005 * 126.06174 * 0.02562 * 11 10 9 38 38 H 1.09007 * 109.46658 * 89.97837 * 13 12 11 39 39 H 1.09001 * 109.47373 * 209.98032 * 13 12 11 40 40 H 1.09004 * 109.47265 * 329.98160 * 13 12 11 41 41 H 1.08999 * 109.46891 * 209.99559 * 15 14 12 42 42 H 1.08998 * 109.46834 * 329.98975 * 15 14 12 43 43 H 0.96993 * 120.00106 * 180.02562 * 19 18 16 44 44 H 1.09005 * 110.51886 * 280.62106 * 25 6 5 45 45 H 1.09003 * 110.69336 * 157.59072 * 25 6 5 46 46 H 0.96697 * 114.00157 * 180.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6241 1.9920 0.8444 5 6 1.6744 2.1392 -1.3239 6 7 2.9388 2.5040 -1.9897 7 6 3.1385 2.6830 -3.3106 8 8 2.2155 2.5423 -4.0895 9 7 4.3615 3.0167 -3.7681 10 6 4.5691 3.2034 -5.1420 11 6 3.5979 3.0750 -6.1478 12 6 4.1927 3.3337 -7.3344 13 6 3.5251 3.3107 -8.6853 14 7 5.4907 3.6148 -7.0942 15 6 6.4988 3.9532 -8.1020 16 6 6.5206 5.4457 -8.3093 17 1 5.8509 6.0789 -7.7464 18 6 7.3963 6.0029 -9.2169 19 7 7.4157 7.3055 -9.3975 20 14 8.5552 4.9077 -10.1900 21 1 7.8981 4.4921 -11.4552 22 1 9.7994 5.6563 -10.5010 23 1 8.8895 3.7039 -9.3872 24 7 5.7037 3.5336 -5.7121 25 6 3.9446 2.6290 -0.9059 26 6 3.5851 1.4658 0.0525 27 1 3.9980 0.5247 -0.3109 28 8 4.0424 1.7383 1.3786 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.1046 1.4586 -1.9566 35 1 1.0888 3.0361 -1.1220 36 1 5.0979 3.1286 -3.1467 37 1 2.5599 2.8158 -5.9999 38 1 3.1289 4.3007 -8.9115 39 1 4.2532 3.0282 -9.4457 40 1 2.7103 2.5868 -8.6757 41 1 7.4790 3.6193 -7.7617 42 1 6.2528 3.4594 -9.0420 43 1 8.0315 7.6974 -10.0362 44 1 3.8439 3.5893 -0.4001 45 1 4.9531 2.5048 -1.3002 46 1 5.0051 1.7642 1.4652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272084941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:46 Heat of formation + Delta-G solvation = 8.287710 kcal Electronic energy + Delta-G solvation = -27120.228185 eV Core-core repulsion = 23240.078636 eV Total energy + Delta-G solvation = -3880.149549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.96796 -40.22675 -38.63382 -36.05099 -34.87905 -34.34657 -33.24366 -31.54444 -31.11448 -29.71664 -28.36206 -27.09342 -26.39867 -25.06014 -22.72785 -22.47823 -21.33589 -20.29260 -19.74805 -19.34856 -18.06549 -17.67478 -17.11849 -16.47611 -15.93011 -15.70097 -15.19293 -15.12186 -14.64500 -14.49221 -14.25407 -13.95614 -13.91946 -13.55570 -13.27576 -12.94362 -12.69717 -12.57503 -12.45818 -12.38805 -12.29681 -12.02508 -11.97476 -11.54390 -11.46060 -11.22035 -11.02690 -10.96695 -10.79672 -10.60237 -10.54430 -10.07703 -9.96477 -9.74027 -9.58252 -8.95672 -8.78523 -7.98593 -7.44634 -6.26276 -4.29265 2.14354 2.55555 3.01397 3.13304 3.19451 3.22735 3.28242 3.67774 3.75061 3.97489 4.12312 4.17569 4.21368 4.42022 4.71847 4.77566 4.89073 5.01993 5.06978 5.13731 5.17871 5.29475 5.35023 5.41073 5.52859 5.60939 5.63311 5.66770 5.73591 5.83648 5.91796 5.97221 6.05022 6.20698 6.35453 6.47411 6.52410 6.59369 6.79488 6.97173 7.14218 7.29086 7.44011 7.81091 7.86845 8.31565 8.50884 8.58853 8.79467 9.28895 10.86278 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024510 B = 0.002462 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.105059 B =11372.280523 C =12013.219907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.095 4.095 4 H 0.098 0.902 5 C 0.131 3.869 6 N -0.636 5.636 7 C 0.736 3.264 8 O -0.560 6.560 9 N -0.642 5.642 10 C 0.286 3.714 11 C -0.286 4.286 12 C 0.095 3.905 13 C -0.085 4.085 14 N -0.318 5.318 15 C 0.232 3.768 16 C -0.540 4.540 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.887 5.887 20 Si 0.873 3.127 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.264 1.264 24 N -0.321 5.321 25 C 0.066 3.934 26 C 0.095 3.905 27 H 0.075 0.925 28 O -0.556 6.556 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.405 0.595 37 H 0.162 0.838 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.269 0.731 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.391 -14.479 18.683 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.114 4.114 4 H 0.116 0.884 5 C 0.008 3.992 6 N -0.377 5.377 7 C 0.438 3.562 8 O -0.434 6.434 9 N -0.292 5.292 10 C 0.032 3.968 11 C -0.317 4.317 12 C -0.036 4.036 13 C -0.143 4.143 14 N -0.100 5.100 15 C 0.113 3.887 16 C -0.578 4.578 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.524 5.524 20 Si 0.699 3.301 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.188 1.188 24 N -0.151 5.151 25 C -0.058 4.058 26 C 0.035 3.965 27 H 0.093 0.907 28 O -0.361 6.361 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.240 0.760 37 H 0.180 0.820 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.299 -14.090 18.113 24.761 hybrid contribution 1.068 -0.292 -0.372 1.168 sum -8.231 -14.381 17.742 24.277 Atomic orbital electron populations 1.21829 0.95239 1.02008 1.02223 1.21594 0.96460 0.94737 1.02495 1.22159 0.93627 0.97675 0.97955 0.88377 1.22010 0.85625 0.99662 0.91901 1.47645 1.12199 1.74455 1.03366 1.14986 0.82588 0.78175 0.80470 1.90886 1.41704 1.57495 1.53357 1.41374 1.10668 1.72190 1.04938 1.18638 0.93575 1.01410 0.83146 1.21243 1.01652 1.19801 0.88967 1.21052 0.85539 0.99685 0.97298 1.20355 0.99771 1.03262 0.90918 1.48490 1.07821 1.50300 1.03400 1.19980 0.86530 0.98117 0.84060 1.21182 1.22928 0.89195 1.24526 0.90122 1.24813 0.96467 0.95047 0.96241 1.69874 1.37301 1.10102 1.35094 0.86903 0.81196 0.81111 0.80935 1.19608 1.20513 1.18810 1.77246 1.20018 1.28418 0.89402 1.23298 0.93133 1.00285 0.89048 1.22913 0.95042 0.96298 0.82252 0.90743 1.86531 1.27502 1.94518 1.27563 0.92201 0.92494 0.92508 0.91566 0.91306 0.89605 0.91269 0.75974 0.82049 0.90062 0.91132 0.90635 0.93268 0.93650 0.92133 0.89742 0.90162 0.76982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.73 37.16 0.36 -0.56 16 2 C -0.12 -0.74 5.13 -26.73 -0.14 -0.88 16 3 C -0.10 -0.67 2.80 -89.25 -0.25 -0.92 16 4 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 5 C 0.13 1.21 6.14 -2.98 -0.02 1.19 16 6 N -0.64 -7.12 3.30 -175.26 -0.58 -7.70 16 7 C 0.74 11.44 8.51 -86.92 -0.74 10.70 16 8 O -0.56 -10.49 13.81 5.29 0.07 -10.42 16 9 N -0.64 -10.33 5.42 -15.51 -0.08 -10.41 16 10 C 0.29 5.87 8.11 -154.37 -1.25 4.62 16 11 C -0.29 -5.92 9.52 -39.84 -0.38 -6.30 16 12 C 0.10 1.99 6.92 -82.28 -0.57 1.42 16 13 C -0.08 -1.42 10.11 36.01 0.36 -1.06 16 14 N -0.32 -7.42 3.59 -58.33 -0.21 -7.63 16 15 C 0.23 5.60 5.06 -5.20 -0.03 5.57 16 16 C -0.54 -15.17 9.94 -34.44 -0.34 -15.51 16 17 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 20 Si 0.87 20.11 27.47 -169.99 -4.67 15.44 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 24 N -0.32 -7.34 12.59 31.44 0.40 -6.94 16 25 C 0.07 0.51 6.68 -1.98 -0.01 0.50 16 26 C 0.10 0.64 3.98 -24.86 -0.10 0.54 16 27 H 0.07 0.48 7.86 -51.93 -0.41 0.07 16 28 O -0.56 -3.52 13.41 -35.23 -0.47 -3.99 16 29 H 0.06 0.38 6.88 -51.93 -0.36 0.02 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.86 6.64 -51.93 -0.34 0.51 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.40 5.32 7.18 -40.82 -0.29 5.02 16 37 H 0.16 3.30 5.91 -52.48 -0.31 2.99 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.07 1.14 7.07 -51.93 -0.37 0.77 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.19 7.20 -51.93 -0.37 0.82 16 42 H 0.05 1.00 6.46 -51.93 -0.34 0.67 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.52 6.85 -51.93 -0.36 0.17 16 46 H 0.38 0.90 9.12 45.56 0.42 1.31 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -35.23 373.16 -8.47 -43.70 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.12 Total: 6.54 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -3.20 Total: 1.40 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.30 Total: -58.29 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.40 Total: -14.41 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.23 -8.47 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272084941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.983 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds