Wall clock time and date at job start Tue Mar 31 2020 12:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 H 1.08993 * 110.37137 * 55.73354 * 3 2 1 5 5 C 1.54005 * 110.32503 * 293.54657 * 3 2 1 6 6 N 1.47485 * 107.24392 * 242.31631 * 5 3 2 7 7 C 1.34786 * 127.03052 * 154.61643 * 6 5 3 8 8 O 1.21590 * 119.99872 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99862 * 180.02562 * 7 6 5 10 10 C 1.40196 * 120.00225 * 180.02562 * 9 7 6 11 11 C 1.40403 * 125.97144 * 359.97438 * 10 9 7 12 12 C 1.35235 * 107.86977 * 180.02562 * 11 10 9 13 13 C 1.50703 * 126.07089 * 179.97438 * 12 11 10 14 14 N 1.34961 * 107.86034 * 0.02562 * 12 11 10 15 15 C 1.46499 * 125.97825 * 180.02562 * 14 12 11 16 16 C 1.50692 * 109.47602 * 89.99221 * 15 14 12 17 17 H 1.08000 * 120.00094 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00166 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00132 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00028 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47176 * 89.99800 * 20 18 16 22 22 H 1.48495 * 109.47291 * 210.00135 * 20 18 16 23 23 H 1.48500 * 109.47084 * 329.99893 * 20 18 16 24 24 N 1.31203 * 125.97507 * 179.68657 * 10 9 7 25 25 C 1.48377 * 105.79701 * 334.78511 * 6 5 3 26 26 C 1.54616 * 110.32548 * 177.92609 * 3 2 1 27 27 H 1.09002 * 110.74101 * 22.40549 * 26 3 2 28 28 O 1.42898 * 110.74039 * 259.25965 * 26 3 2 29 29 H 1.09001 * 109.47176 * 59.99915 * 1 2 3 30 30 H 1.09001 * 109.47335 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47167 * 300.00557 * 1 2 3 32 32 H 1.09001 * 109.46952 * 240.00196 * 2 1 3 33 33 H 1.09001 * 109.47176 * 120.00085 * 2 1 3 34 34 H 1.09002 * 109.91501 * 1.77607 * 5 3 2 35 35 H 1.08999 * 109.90987 * 122.86218 * 5 3 2 36 36 H 0.97006 * 120.00262 * 359.97438 * 9 7 6 37 37 H 1.08005 * 126.06174 * 0.02562 * 11 10 9 38 38 H 1.09007 * 109.46658 * 89.97837 * 13 12 11 39 39 H 1.09001 * 109.47373 * 209.98032 * 13 12 11 40 40 H 1.09004 * 109.47265 * 329.98160 * 13 12 11 41 41 H 1.08999 * 109.46891 * 209.99559 * 15 14 12 42 42 H 1.08998 * 109.46834 * 329.98975 * 15 14 12 43 43 H 0.96993 * 120.00106 * 180.02562 * 19 18 16 44 44 H 1.09005 * 110.51886 * 280.62106 * 25 6 5 45 45 H 1.09003 * 110.69336 * 157.59072 * 25 6 5 46 46 H 0.96697 * 114.00157 * 180.02562 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6241 1.9920 0.8444 5 6 1.6744 2.1392 -1.3239 6 7 2.9388 2.5040 -1.9897 7 6 3.1385 2.6830 -3.3106 8 8 2.2155 2.5423 -4.0895 9 7 4.3615 3.0167 -3.7681 10 6 4.5691 3.2034 -5.1420 11 6 3.5979 3.0750 -6.1478 12 6 4.1927 3.3337 -7.3344 13 6 3.5251 3.3107 -8.6853 14 7 5.4907 3.6148 -7.0942 15 6 6.4988 3.9532 -8.1020 16 6 6.5206 5.4457 -8.3093 17 1 5.8509 6.0789 -7.7464 18 6 7.3963 6.0029 -9.2169 19 7 7.4157 7.3055 -9.3975 20 14 8.5552 4.9077 -10.1900 21 1 7.8981 4.4921 -11.4552 22 1 9.7994 5.6563 -10.5010 23 1 8.8895 3.7039 -9.3872 24 7 5.7037 3.5336 -5.7121 25 6 3.9446 2.6290 -0.9059 26 6 3.5851 1.4658 0.0525 27 1 3.9980 0.5247 -0.3109 28 8 4.0424 1.7383 1.3786 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.1046 1.4586 -1.9566 35 1 1.0888 3.0361 -1.1220 36 1 5.0979 3.1286 -3.1467 37 1 2.5599 2.8158 -5.9999 38 1 3.1289 4.3007 -8.9115 39 1 4.2532 3.0282 -9.4457 40 1 2.7103 2.5868 -8.6757 41 1 7.4790 3.6193 -7.7617 42 1 6.2528 3.4594 -9.0420 43 1 8.0315 7.6974 -10.0362 44 1 3.8439 3.5893 -0.4001 45 1 4.9531 2.5048 -1.3002 46 1 5.0051 1.7642 1.4652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272084941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:45 Heat of formation + Delta-G solvation = -17.601606 kcal Electronic energy + Delta-G solvation = -27121.350830 eV Core-core repulsion = 23240.078636 eV Total energy + Delta-G solvation = -3881.272194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.40321 -41.37313 -39.59323 -36.70258 -36.31927 -35.38992 -34.89636 -33.16085 -32.80813 -30.51719 -29.19294 -28.74002 -27.89901 -25.97295 -24.45989 -23.18289 -22.57751 -21.27410 -21.00830 -20.63316 -19.23344 -18.96266 -18.54623 -17.81122 -17.23108 -16.91961 -16.52290 -16.21425 -15.95041 -15.52548 -15.43239 -15.06918 -14.82292 -14.66296 -14.45994 -14.40749 -13.92622 -13.78509 -13.66411 -13.54833 -13.33304 -13.21903 -13.03442 -12.88279 -12.62253 -12.52848 -12.29967 -11.98683 -11.83969 -11.64527 -11.56559 -11.51523 -11.46735 -11.27347 -10.99033 -10.88843 -9.94156 -9.59435 -9.06714 -8.40068 -6.51301 0.90182 0.98838 1.35530 1.38187 1.48301 1.58622 1.89547 2.27234 2.29501 2.70193 2.92263 3.22104 3.44142 3.52168 3.80487 3.85999 4.07644 4.18047 4.19353 4.32745 4.36930 4.50129 4.52599 4.54095 4.59625 4.68138 4.76471 4.79998 4.80556 4.82608 4.84864 4.97958 4.98967 5.10675 5.14191 5.19341 5.23361 5.28388 5.40081 5.45839 5.75609 5.86139 5.99536 6.36602 6.51284 6.55595 6.85445 7.00113 7.12572 7.29131 8.76673 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024510 B = 0.002462 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.105059 B =11372.280523 C =12013.219907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.088 4.088 4 H 0.103 0.897 5 C 0.127 3.873 6 N -0.630 5.630 7 C 0.732 3.268 8 O -0.596 6.596 9 N -0.634 5.634 10 C 0.293 3.707 11 C -0.298 4.298 12 C 0.092 3.908 13 C -0.084 4.084 14 N -0.343 5.343 15 C 0.242 3.758 16 C -0.550 4.550 17 H 0.022 0.978 18 C 0.021 3.979 19 N -0.938 5.938 20 Si 0.952 3.048 21 H -0.250 1.250 22 H -0.279 1.279 23 H -0.244 1.244 24 N -0.355 5.355 25 C 0.062 3.938 26 C 0.105 3.895 27 H 0.081 0.919 28 O -0.564 6.564 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.418 0.582 37 H 0.165 0.835 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.273 0.727 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 -16.698 19.278 27.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.107 4.107 4 H 0.122 0.878 5 C 0.005 3.995 6 N -0.369 5.369 7 C 0.434 3.566 8 O -0.474 6.474 9 N -0.286 5.286 10 C 0.038 3.962 11 C -0.329 4.329 12 C -0.038 4.038 13 C -0.142 4.142 14 N -0.125 5.125 15 C 0.122 3.878 16 C -0.588 4.588 17 H 0.041 0.959 18 C -0.179 4.179 19 N -0.576 5.576 20 Si 0.772 3.228 21 H -0.174 1.174 22 H -0.204 1.204 23 H -0.167 1.167 24 N -0.186 5.186 25 C -0.061 4.061 26 C 0.045 3.955 27 H 0.099 0.901 28 O -0.372 6.372 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.256 0.744 37 H 0.182 0.818 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -8.815 -16.325 18.796 26.410 hybrid contribution 0.795 0.469 -0.361 0.991 sum -8.020 -15.856 18.435 25.604 Atomic orbital electron populations 1.21829 0.94977 1.02322 1.02166 1.21559 0.96690 0.94168 1.02462 1.22118 0.94229 0.97851 0.96529 0.87845 1.22189 0.84863 0.99886 0.92589 1.47650 1.13984 1.72787 1.02449 1.15130 0.81797 0.78037 0.81663 1.90846 1.42591 1.59070 1.54899 1.41345 1.11626 1.72088 1.03519 1.18926 0.92857 0.99529 0.84922 1.21408 1.01838 1.20365 0.89250 1.21739 0.84814 0.98127 0.99134 1.20516 1.00721 1.04076 0.88906 1.48433 1.08566 1.51976 1.03516 1.19782 0.87185 0.95305 0.85546 1.21250 1.22274 0.91100 1.24220 0.95925 1.25851 0.98211 0.96615 0.97229 1.70038 1.38661 1.12637 1.36300 0.85667 0.78168 0.79208 0.79723 1.17401 1.20393 1.16705 1.77157 1.21382 1.30331 0.89682 1.23565 0.92952 1.01359 0.88201 1.22767 0.94574 0.95879 0.82294 0.90081 1.86502 1.29426 1.94436 1.26845 0.92958 0.92042 0.91857 0.92307 0.90530 0.90594 0.90947 0.74391 0.81763 0.90410 0.90185 0.87381 0.93176 0.90852 0.91741 0.89009 0.88777 0.74885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.73 71.98 0.70 -0.96 16 2 C -0.11 -1.25 5.13 30.59 0.16 -1.09 16 3 C -0.09 -1.09 2.80 -9.90 -0.03 -1.12 16 4 H 0.10 1.23 8.08 -2.39 -0.02 1.21 16 5 C 0.13 2.24 6.14 86.53 0.53 2.77 16 6 N -0.63 -13.49 3.30 -826.64 -2.73 -16.22 16 7 C 0.73 22.56 8.51 179.05 1.52 24.08 16 8 O -0.60 -22.54 13.81 -4.00 -0.06 -22.60 16 9 N -0.63 -20.24 5.42 -321.24 -1.74 -21.99 16 10 C 0.29 12.12 8.11 133.31 1.08 13.20 16 11 C -0.30 -12.41 9.52 22.10 0.21 -12.20 16 12 C 0.09 3.83 6.92 41.39 0.29 4.11 16 13 C -0.08 -2.72 10.11 71.24 0.72 -2.00 16 14 N -0.34 -16.09 3.59 -338.47 -1.22 -17.31 16 15 C 0.24 11.54 5.06 85.63 0.43 11.97 16 16 C -0.55 -31.73 9.94 25.60 0.25 -31.48 16 17 H 0.02 1.52 8.06 -2.91 -0.02 1.49 16 18 C 0.02 1.16 5.47 84.65 0.46 1.62 16 19 N -0.94 -57.23 13.96 21.45 0.30 -56.93 16 20 Si 0.95 40.68 27.47 68.60 1.88 42.57 16 21 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 24 N -0.36 -16.48 12.59 -54.44 -0.69 -17.16 16 25 C 0.06 0.84 6.68 86.68 0.58 1.42 16 26 C 0.11 1.17 3.98 31.81 0.13 1.29 16 27 H 0.08 0.83 7.86 -2.39 -0.02 0.82 16 28 O -0.56 -5.58 13.41 -148.98 -2.00 -7.57 16 29 H 0.05 0.63 6.88 -2.39 -0.02 0.62 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 1.51 6.64 -2.39 -0.02 1.49 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.42 10.69 7.18 -92.70 -0.67 10.02 16 37 H 0.17 6.75 5.91 -2.91 -0.02 6.74 16 38 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 39 H 0.08 2.42 7.07 -2.39 -0.02 2.40 16 40 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.05 2.37 7.20 -2.39 -0.02 2.35 16 42 H 0.07 3.08 6.46 -2.39 -0.02 3.06 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.09 1.02 6.85 -2.39 -0.02 1.01 16 46 H 0.40 0.73 9.12 -74.06 -0.68 0.05 16 Total: -1.00 -79.06 373.16 0.42 -78.64 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.38 Total: 26.96 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 7.04 Total: 11.61 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -6.08 Total: -129.61 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -2.05 Total: -30.17 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.88 Total: 42.57 kcal Total: -79.06 0.42 -78.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272084941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.043 kcal (2) G-P(sol) polarization free energy of solvation -79.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds