Wall clock time and date at job start Tue Mar 31 2020 12:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47391 * 2 1 4 4 H 1.09003 * 109.51218 * 55.00224 * 3 2 1 5 5 C 1.53297 * 109.51571 * 175.10271 * 3 2 1 6 6 N 1.47266 * 108.32384 * 172.23582 * 5 3 2 7 7 C 1.34774 * 120.95772 * 129.47354 * 6 5 3 8 8 O 1.21592 * 119.99952 * 175.03187 * 7 6 5 9 9 N 1.34773 * 119.99869 * 355.02458 * 7 6 5 10 10 C 1.40205 * 119.99844 * 185.21521 * 9 7 6 11 11 C 1.40398 * 125.97399 * 359.71942 * 10 9 7 12 12 C 1.35244 * 107.86820 * 179.82659 * 11 10 9 13 13 C 1.50697 * 126.06923 * 180.15783 * 12 11 10 14 14 N 1.34965 * 107.85528 * 0.43036 * 12 11 10 15 15 C 1.46496 * 125.97443 * 179.74591 * 14 12 11 16 16 C 1.50696 * 109.47565 * 270.00280 * 15 14 12 17 17 H 1.08001 * 119.99748 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00456 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00346 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99999 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47047 * 89.99583 * 20 18 16 22 22 H 1.48491 * 109.47242 * 209.99928 * 20 18 16 23 23 H 1.48503 * 109.47282 * 330.00238 * 20 18 16 24 24 N 1.31212 * 125.96728 * 180.02562 * 10 9 7 25 25 C 1.47149 * 118.06160 * 309.48848 * 6 5 3 26 26 C 1.53295 * 108.38381 * 50.53678 * 25 6 5 27 27 O 1.42963 * 109.22619 * 307.69621 * 26 25 6 28 28 H 1.08996 * 109.47235 * 59.99426 * 1 2 3 29 29 H 1.08991 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47083 * 299.99921 * 1 2 3 31 31 H 1.09000 * 109.47083 * 240.00079 * 2 1 3 32 32 H 1.08996 * 109.47328 * 120.00026 * 2 1 3 33 33 H 1.08998 * 109.67826 * 291.99748 * 5 3 2 34 34 H 1.08995 * 109.68036 * 52.55795 * 5 3 2 35 35 H 0.96995 * 120.00554 * 5.22122 * 9 7 6 36 36 H 1.08005 * 126.05957 * 0.02562 * 11 10 9 37 37 H 1.09002 * 109.46911 * 270.32067 * 13 12 11 38 38 H 1.09000 * 109.47558 * 30.31907 * 13 12 11 39 39 H 1.09000 * 109.46829 * 150.32346 * 13 12 11 40 40 H 1.09006 * 109.47087 * 30.00173 * 15 14 12 41 41 H 1.09000 * 109.47207 * 149.99517 * 15 14 12 42 42 H 0.96998 * 120.00442 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.68503 * 290.81846 * 25 6 5 44 44 H 1.08996 * 109.68806 * 170.26221 * 25 6 5 45 45 H 1.09000 * 109.51231 * 187.77278 * 26 25 6 46 46 H 1.08998 * 109.55387 * 67.64734 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6059 1.9822 0.8416 5 6 3.5681 1.4453 0.1234 6 7 4.0453 2.8254 -0.0671 7 6 4.8915 3.3942 0.8143 8 8 5.3456 4.5005 0.5942 9 7 5.2343 2.7368 1.9398 10 6 6.0261 3.3702 2.9081 11 6 6.5333 4.6772 2.8325 12 6 7.2407 4.9137 3.9606 13 6 7.9590 6.1928 4.3058 14 7 7.1943 3.7987 4.7196 15 6 7.8337 3.6192 6.0254 16 6 9.2249 3.0730 5.8327 17 1 9.5956 2.8785 4.8371 18 6 10.0246 2.8215 6.9273 19 7 11.2385 2.3443 6.7592 20 14 9.3838 3.1585 8.6493 21 1 8.7105 1.9431 9.1736 22 1 10.5178 3.5184 9.5378 23 1 8.4135 4.2818 8.6054 24 7 6.4274 2.8431 4.0407 25 6 3.5711 3.5652 -1.2474 26 6 2.0429 3.4580 -1.3033 27 8 1.6643 2.0818 -1.2223 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8572 1.0888 1.1120 34 1 3.9993 0.7991 -0.6412 35 1 4.9333 1.8254 2.0800 36 1 6.3822 5.3718 2.0193 37 1 8.9796 6.1503 3.9254 38 1 7.4373 7.0360 3.8530 39 1 7.9795 6.3171 5.3884 40 1 7.8883 4.5795 6.5383 41 1 7.2486 2.9207 6.6235 42 1 11.8010 2.1670 7.5293 43 1 4.0027 3.1323 -2.1499 44 1 3.8629 4.6122 -1.1662 45 1 1.6825 3.8802 -2.2414 46 1 1.6080 4.0052 -0.4670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272101883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:04 Heat of formation + Delta-G solvation = 17.120141 kcal Electronic energy + Delta-G solvation = -27362.739793 eV Core-core repulsion = 23482.973246 eV Total energy + Delta-G solvation = -3879.766546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08238 -40.28693 -38.81661 -35.15328 -35.00837 -34.34795 -33.27101 -31.59265 -31.11691 -30.37848 -28.19979 -26.95936 -26.39974 -24.67169 -23.59437 -22.42937 -21.54135 -20.78445 -19.82921 -19.24805 -17.83223 -17.12438 -17.08819 -16.56198 -16.07924 -15.73594 -15.39343 -15.23587 -14.77222 -14.60429 -14.33213 -14.14629 -13.99127 -13.66066 -13.46585 -13.21597 -12.62497 -12.52479 -12.36635 -12.30679 -12.24592 -11.91893 -11.88172 -11.58326 -11.45416 -11.37056 -11.24117 -10.90991 -10.80936 -10.59944 -10.44090 -10.09773 -9.97738 -9.74643 -9.58386 -8.83825 -8.78836 -7.99615 -7.45716 -6.26648 -4.29743 2.15327 2.53955 2.98858 3.14384 3.18603 3.20884 3.27284 3.31153 3.73342 3.93326 4.20566 4.20859 4.46496 4.59332 4.66224 4.78717 4.85053 4.95332 5.01713 5.07767 5.13893 5.28137 5.33085 5.39870 5.46277 5.58104 5.60563 5.61053 5.74978 5.81592 5.94461 5.97541 6.04503 6.20916 6.35607 6.45190 6.47236 6.58226 6.75803 6.77185 6.88424 7.28455 7.42275 7.76065 7.85937 8.31060 8.46695 8.57554 8.79054 9.28474 10.85918 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019928 B = 0.002648 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.699744 B =10572.444694 C =11425.877425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.078 3.922 4 H 0.065 0.935 5 C 0.079 3.921 6 N -0.632 5.632 7 C 0.719 3.281 8 O -0.561 6.561 9 N -0.644 5.644 10 C 0.285 3.715 11 C -0.286 4.286 12 C 0.096 3.904 13 C -0.085 4.085 14 N -0.318 5.318 15 C 0.232 3.768 16 C -0.540 4.540 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.887 5.887 20 Si 0.874 3.126 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.264 1.264 24 N -0.321 5.321 25 C 0.097 3.903 26 C 0.048 3.952 27 O -0.374 6.374 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.405 0.595 36 H 0.162 0.838 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.269 0.731 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.282 0.245 -14.070 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.019 3.981 4 H 0.083 0.917 5 C -0.045 4.045 6 N -0.371 5.371 7 C 0.420 3.580 8 O -0.436 6.436 9 N -0.295 5.295 10 C 0.031 3.969 11 C -0.317 4.317 12 C -0.035 4.035 13 C -0.143 4.143 14 N -0.100 5.100 15 C 0.113 3.887 16 C -0.579 4.579 17 H 0.099 0.901 18 C -0.125 4.125 19 N -0.524 5.524 20 Si 0.700 3.300 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.189 1.189 24 N -0.151 5.151 25 C -0.026 4.026 26 C -0.030 4.030 27 O -0.292 6.292 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.242 0.758 36 H 0.179 0.821 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.840 -0.137 -13.414 23.950 hybrid contribution -0.037 0.172 0.743 0.763 sum -19.877 0.035 -12.672 23.573 Atomic orbital electron populations 1.21695 0.94842 1.01747 1.02357 1.21535 0.97154 0.93488 1.03262 1.22540 0.92724 0.94981 0.87825 0.91657 1.22452 0.95436 0.83558 1.03027 1.47246 1.49229 1.14747 1.25891 1.15473 0.79397 0.83879 0.79262 1.90870 1.56900 1.19532 1.76317 1.41556 1.53259 1.17297 1.17426 1.18662 0.96001 0.92322 0.89877 1.21226 1.11037 0.97634 1.01768 1.21048 0.99142 0.91069 0.92273 1.20352 1.00087 0.91483 1.02378 1.48489 1.37252 1.07350 1.16891 1.19993 0.93838 0.98440 0.76428 1.21179 0.95785 1.44708 0.96183 0.90113 1.24809 0.94618 0.94176 0.98944 1.69871 1.08092 1.43244 1.31167 0.86888 0.79104 0.79487 0.84508 1.19647 1.20545 1.18881 1.77247 1.16566 1.14550 1.06765 1.22186 0.94352 0.99188 0.86864 1.23025 0.93737 0.83121 1.03076 1.87959 1.79722 1.23774 1.37784 0.91899 0.92535 0.92851 0.90676 0.90104 0.89431 0.89981 0.75790 0.82101 0.90053 0.90659 0.91120 0.93217 0.93695 0.92120 0.90672 0.87670 0.87417 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.81 37.16 0.36 -0.56 16 2 C -0.12 -0.72 5.65 -26.73 -0.15 -0.87 16 3 C 0.08 0.61 2.77 -26.58 -0.07 0.53 16 4 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 5 C 0.08 0.67 5.93 -3.47 -0.02 0.65 16 6 N -0.63 -7.11 3.02 -177.92 -0.54 -7.65 16 7 C 0.72 11.04 8.28 -86.92 -0.72 10.32 16 8 O -0.56 -10.30 12.99 5.28 0.07 -10.23 16 9 N -0.64 -10.31 5.37 -15.50 -0.08 -10.39 16 10 C 0.29 5.82 8.11 -154.35 -1.25 4.57 16 11 C -0.29 -5.89 9.52 -39.84 -0.38 -6.27 16 12 C 0.10 1.99 6.92 -82.28 -0.57 1.42 16 13 C -0.08 -1.42 10.11 36.00 0.36 -1.06 16 14 N -0.32 -7.40 3.59 -58.33 -0.21 -7.61 16 15 C 0.23 5.59 5.06 -5.20 -0.03 5.56 16 16 C -0.54 -15.16 9.94 -34.44 -0.34 -15.50 16 17 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 20 Si 0.87 20.12 27.47 -169.99 -4.67 15.45 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 24 N -0.32 -7.32 12.59 31.44 0.40 -6.92 16 25 C 0.10 0.90 6.62 -3.54 -0.02 0.87 16 26 C 0.05 0.36 6.98 37.31 0.26 0.62 16 27 O -0.37 -3.25 9.93 -35.23 -0.35 -3.60 16 28 H 0.06 0.44 7.83 -51.93 -0.41 0.03 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.67 5.67 -51.93 -0.29 0.38 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.40 5.31 6.34 -40.82 -0.26 5.05 16 36 H 0.16 3.26 5.93 -52.48 -0.31 2.94 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.14 7.07 -51.93 -0.37 0.78 16 40 H 0.05 1.11 6.09 -51.93 -0.32 0.80 16 41 H 0.05 1.07 7.57 -51.93 -0.39 0.68 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.11 1.06 7.12 -51.93 -0.37 0.69 16 45 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -34.36 370.37 -8.65 -43.02 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.96 Total: 5.57 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.67 Total: 2.39 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.34 Total: -58.17 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.28 Total: -13.83 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.36 -8.65 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272101883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.135 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds