Wall clock time and date at job start Tue Mar 31 2020 12:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47046 * 2 1 4 4 H 1.08994 * 109.47176 * 54.99919 * 3 2 1 5 5 C 1.50699 * 109.47013 * 175.00167 * 3 2 1 6 6 H 1.07998 * 120.00377 * 119.99803 * 5 3 2 7 7 C 1.37878 * 119.99895 * 299.99496 * 5 3 2 8 8 N 1.31513 * 119.99887 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99908 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47237 * 60.00000 * 9 7 5 11 11 H 1.48506 * 109.47100 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46971 * 299.99630 * 9 7 5 13 13 N 1.46506 * 109.46750 * 294.99708 * 3 2 1 14 14 C 1.34771 * 119.99515 * 85.00464 * 13 3 2 15 15 O 1.21583 * 120.00543 * 0.26795 * 14 13 3 16 16 N 1.34784 * 119.99547 * 179.97438 * 14 13 3 17 17 C 1.39503 * 119.99970 * 179.97438 * 16 14 13 18 18 C 1.36102 * 126.21429 * 0.02562 * 17 16 14 19 19 C 1.39769 * 107.82800 * 179.97438 * 18 17 16 20 20 C 1.50699 * 125.83857 * 179.97438 * 19 18 17 21 21 H 1.08995 * 109.87436 * 4.30433 * 20 19 18 22 22 C 1.54104 * 109.87436 * 125.31041 * 20 19 18 23 23 C 1.54808 * 104.18719 * 121.45270 * 22 20 19 24 24 C 1.54999 * 102.09283 * 20.87840 * 23 22 20 25 25 O 1.43744 * 109.87772 * 243.29167 * 20 19 18 26 26 N 1.30845 * 108.31599 * 0.02562 * 19 18 17 27 27 N 1.35244 * 126.21477 * 179.71624 * 17 16 14 28 28 C 1.46494 * 126.04833 * 359.97438 * 27 17 16 29 29 H 1.08997 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47126 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.46916 * 60.00547 * 1 2 3 32 32 H 1.09004 * 109.47481 * 240.00029 * 2 1 3 33 33 H 1.09004 * 109.47395 * 119.99678 * 2 1 3 34 34 H 0.97005 * 119.99741 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00076 * 265.00123 * 13 3 2 36 36 H 0.96999 * 120.00044 * 359.97438 * 16 14 13 37 37 H 1.08004 * 126.08712 * 359.97438 * 18 17 16 38 38 H 1.09003 * 110.48841 * 240.12560 * 22 20 19 39 39 H 1.08997 * 110.49196 * 2.77697 * 22 20 19 40 40 H 1.09005 * 110.90934 * 139.07337 * 23 22 20 41 41 H 1.09001 * 110.90869 * 262.68372 * 23 22 20 42 42 H 1.09000 * 110.61534 * 81.47764 * 24 23 22 43 43 H 1.09002 * 110.61933 * 204.47449 * 24 23 22 44 44 H 1.09009 * 109.46956 * 89.99669 * 28 27 17 45 45 H 1.08992 * 109.47770 * 210.00109 * 28 27 17 46 46 H 1.09006 * 109.46959 * 330.00588 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8814 1.3818 10 1 6.4995 2.2816 1.3820 11 1 6.3978 0.2169 2.6504 12 1 6.5975 0.1472 0.2349 13 7 1.6524 2.0975 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3395 2.6366 -0.4303 16 7 0.0788 3.2673 -2.5186 17 6 -1.1814 3.8536 -2.6380 18 6 -2.1450 3.8913 -1.6776 19 6 -3.2477 4.5698 -2.2041 20 6 -4.5426 4.8425 -1.4831 21 1 -4.4722 4.4975 -0.4516 22 6 -4.8498 6.3523 -1.5108 23 6 -6.2272 6.4465 -2.2112 24 6 -6.7898 5.0156 -2.0149 25 8 -5.6243 4.1710 -2.1503 26 7 -2.9636 4.9269 -3.4304 27 7 -1.6653 4.4930 -3.7271 28 6 -0.9577 4.6940 -4.9939 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0616 2.9495 35 1 2.2719 2.1231 -1.9979 36 1 0.6985 3.2935 -3.2643 37 1 -2.0709 3.4715 -0.6852 38 1 -4.9096 6.7482 -0.4970 39 1 -4.0924 6.8854 -2.0855 40 1 -6.8627 7.1848 -1.7220 41 1 -6.1102 6.6765 -3.2702 42 1 -7.2263 4.9077 -1.0220 43 1 -7.5246 4.7830 -2.7857 44 1 -1.1613 3.8561 -5.6608 45 1 -1.2992 5.6191 -5.4581 46 1 0.1142 4.7561 -4.8055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278872947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:28 Heat of formation + Delta-G solvation = -11.330596 kcal Electronic energy + Delta-G solvation = -27625.314362 eV Core-core repulsion = 23744.314099 eV Total energy + Delta-G solvation = -3881.000263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.63503 -41.01445 -40.06282 -37.30889 -35.91698 -34.38544 -34.26139 -32.97317 -32.70900 -30.61419 -29.92714 -28.68411 -27.16061 -25.11982 -24.08274 -23.43883 -22.50828 -21.65017 -21.33346 -21.01953 -19.57975 -18.83265 -17.74349 -17.34165 -17.09967 -16.98372 -16.71102 -16.38404 -16.16846 -15.97113 -15.48628 -15.14265 -14.56175 -14.50499 -14.45857 -14.18932 -14.04922 -13.67292 -13.50028 -13.31779 -13.15578 -12.89275 -12.65330 -12.63988 -12.56851 -12.22808 -12.18460 -12.07063 -11.88365 -11.63431 -11.61041 -11.51248 -11.07951 -10.94740 -10.75512 -10.51304 -9.89242 -9.75071 -9.03436 -8.14005 -6.30980 0.73363 0.98369 1.47922 1.48957 1.56654 1.58963 1.95421 2.31862 2.44022 3.09333 3.16002 3.33257 3.40452 3.70033 3.79001 3.98946 4.14777 4.31843 4.37947 4.44088 4.48730 4.52643 4.59781 4.61832 4.65734 4.77197 4.82829 4.86823 4.95008 4.99353 5.02083 5.08666 5.11025 5.22695 5.28256 5.45847 5.51770 5.60560 5.63764 5.78786 5.87070 5.93559 5.99916 6.17826 6.21822 6.68661 6.76429 7.17016 7.36569 7.63544 8.91215 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.002711 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.698156 B =10324.267216 C =10918.077191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.298 3.702 4 H 0.004 0.996 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.707 5.707 14 C 0.701 3.299 15 O -0.594 6.594 16 N -0.649 5.649 17 C 0.333 3.667 18 C -0.303 4.303 19 C 0.078 3.922 20 C 0.155 3.845 21 H 0.089 0.911 22 C -0.140 4.140 23 C -0.143 4.143 24 C 0.037 3.963 25 O -0.395 6.395 26 N -0.289 5.289 27 N -0.386 5.386 28 C 0.088 3.912 29 H 0.042 0.958 30 H 0.028 0.972 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.265 0.735 35 H 0.404 0.596 36 H 0.422 0.578 37 H 0.150 0.850 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.118 11.113 -13.758 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.194 3.806 4 H 0.022 0.978 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.360 5.360 14 C 0.400 3.600 15 O -0.471 6.471 16 N -0.301 5.301 17 C 0.110 3.890 18 C -0.336 4.336 19 C -0.088 4.088 20 C 0.096 3.904 21 H 0.107 0.893 22 C -0.179 4.179 23 C -0.180 4.180 24 C -0.038 4.038 25 O -0.315 6.315 26 N -0.113 5.113 27 N -0.175 5.175 28 C -0.051 4.051 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.260 0.740 37 H 0.168 0.832 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.122 0.878 44 H 0.107 0.893 45 H 0.124 0.876 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.023 11.327 -13.981 22.212 hybrid contribution 1.930 -0.556 0.527 2.076 sum -11.093 10.771 -13.454 20.496 Atomic orbital electron populations 1.21653 0.97118 0.98936 1.00220 1.21820 0.93543 0.99269 1.01416 1.18325 0.93528 0.88775 0.79928 0.97831 1.21515 0.91189 1.39087 1.06777 0.90777 1.25727 1.03111 0.94417 0.95052 1.70039 1.37092 1.38174 1.09856 0.85445 0.79282 0.78378 0.77491 1.19720 1.21429 1.18943 1.45388 1.13361 1.58475 1.18805 1.15858 0.83324 0.78739 0.82031 1.90850 1.52315 1.64648 1.39296 1.41737 1.13719 1.57937 1.16745 1.17582 0.86565 0.95310 0.89527 1.21432 0.94358 1.14842 1.02952 1.22164 0.96378 0.97832 0.92460 1.21084 0.81640 0.93766 0.93951 0.89308 1.22963 0.98599 0.93263 1.03040 1.23094 0.95359 0.97860 1.01721 1.23874 0.88158 0.88959 1.02856 1.88979 1.19569 1.45344 1.77562 1.77249 0.93471 1.24636 1.15986 1.48743 1.11777 1.45034 1.11912 1.22249 0.96883 1.05188 0.80807 0.93939 0.95305 0.94177 0.93977 0.90812 0.92578 0.76085 0.73961 0.83215 0.88346 0.91180 0.87428 0.90935 0.90429 0.87766 0.89316 0.87625 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.52 71.98 0.61 -4.87 16 2 C -0.12 -5.82 5.45 30.60 0.17 -5.65 16 3 C 0.30 14.61 2.24 44.25 0.10 14.71 16 4 H 0.00 0.22 7.57 -2.39 -0.02 0.20 16 5 C -0.55 -27.63 8.73 25.60 0.22 -27.41 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.91 5.29 84.66 0.45 1.35 16 8 N -0.91 -50.94 11.29 21.45 0.24 -50.70 16 9 Si 0.97 40.75 29.54 68.60 2.03 42.78 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 13 N -0.71 -27.32 5.03 -461.40 -2.32 -29.64 16 14 C 0.70 27.07 7.09 179.05 1.27 28.34 16 15 O -0.59 -27.77 10.62 -3.98 -0.04 -27.81 16 16 N -0.65 -18.97 5.42 -322.31 -1.75 -20.71 16 17 C 0.33 10.70 7.66 131.31 1.01 11.71 16 18 C -0.30 -11.25 9.57 22.14 0.21 -11.04 16 19 C 0.08 2.55 5.96 43.08 0.26 2.81 16 20 C 0.16 4.22 3.92 30.22 0.12 4.34 16 21 H 0.09 2.36 8.13 -2.39 -0.02 2.34 16 22 C -0.14 -2.82 6.62 31.58 0.21 -2.61 16 23 C -0.14 -2.21 7.16 31.90 0.23 -1.98 16 24 C 0.04 0.66 7.72 72.67 0.56 1.22 16 25 O -0.40 -11.16 11.19 -148.98 -1.67 -12.82 16 26 N -0.29 -9.01 12.38 -47.44 -0.59 -9.59 16 27 N -0.39 -10.43 4.02 -366.45 -1.47 -11.90 16 28 C 0.09 1.31 11.28 127.77 1.44 2.75 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.03 1.39 7.85 -2.39 -0.02 1.37 16 31 H 0.04 1.76 5.65 -2.39 -0.01 1.75 16 32 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.07 3.97 5.95 -2.38 -0.01 3.96 16 34 H 0.27 14.10 8.31 -92.70 -0.77 13.33 16 35 H 0.40 12.60 8.55 -92.71 -0.79 11.81 16 36 H 0.42 8.39 7.98 -92.71 -0.74 7.65 16 37 H 0.15 6.39 5.82 -2.91 -0.02 6.37 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.58 7.56 -2.39 -0.02 1.56 16 40 H 0.11 1.05 8.14 -2.38 -0.02 1.04 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.11 1.02 7.50 -2.38 -0.02 1.00 16 Total: -1.00 -72.25 369.92 0.77 -71.48 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.52 Total: 35.26 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 6.85 Total: 13.67 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -5.88 Total: -122.55 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -1.71 Total: -40.63 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -72.25 0.77 -71.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278872947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.150 kcal (2) G-P(sol) polarization free energy of solvation -72.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds