Wall clock time and date at job start Tue Mar 31 2020 12:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47342 * 2 1 4 4 H 1.08997 * 109.47563 * 54.99885 * 3 2 1 5 5 C 1.50695 * 109.47448 * 175.00253 * 3 2 1 6 6 H 1.08004 * 120.00546 * 120.27461 * 5 3 2 7 7 C 1.37885 * 119.99721 * 299.99712 * 5 3 2 8 8 N 1.31514 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47093 * 60.00328 * 9 7 5 11 11 H 1.48495 * 109.47002 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47239 * 300.00048 * 9 7 5 13 13 N 1.46506 * 109.47094 * 295.00136 * 3 2 1 14 14 C 1.34767 * 120.00042 * 84.99823 * 13 3 2 15 15 O 1.21590 * 120.00137 * 0.02562 * 14 13 3 16 16 N 1.34778 * 120.00019 * 180.02562 * 14 13 3 17 17 C 1.39504 * 119.99934 * 179.97438 * 16 14 13 18 18 C 1.36099 * 126.21726 * 0.03466 * 17 16 14 19 19 C 1.39764 * 107.82685 * 179.97438 * 18 17 16 20 20 C 1.50704 * 125.84107 * 179.97438 * 19 18 17 21 21 H 1.08995 * 109.82419 * 245.70102 * 20 19 18 22 22 C 1.54380 * 109.83226 * 124.81034 * 20 19 18 23 23 C 1.55445 * 102.19011 * 219.18370 * 22 20 19 24 24 C 1.54955 * 100.98727 * 34.03849 * 23 22 20 25 25 O 1.43241 * 109.82968 * 6.58518 * 20 19 18 26 26 N 1.30844 * 108.32147 * 359.97438 * 19 18 17 27 27 N 1.35256 * 126.21325 * 179.70842 * 17 16 14 28 28 C 1.46499 * 126.04540 * 0.03813 * 27 17 16 29 29 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47014 * 300.00240 * 1 2 3 31 31 H 1.08997 * 109.46959 * 60.00091 * 1 2 3 32 32 H 1.09001 * 109.47014 * 239.99760 * 2 1 3 33 33 H 1.09007 * 109.47025 * 119.99887 * 2 1 3 34 34 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00021 * 265.00203 * 13 3 2 36 36 H 0.97000 * 120.00044 * 0.02562 * 16 14 13 37 37 H 1.07999 * 126.08939 * 0.02562 * 18 17 16 38 38 H 1.09003 * 110.84777 * 337.32539 * 22 20 19 39 39 H 1.08998 * 110.84893 * 100.94024 * 22 20 19 40 40 H 1.09000 * 111.06242 * 276.12597 * 23 22 20 41 41 H 1.09001 * 111.18625 * 152.00582 * 23 22 20 42 42 H 1.08999 * 110.31045 * 204.68883 * 24 23 22 43 43 H 1.09002 * 110.39226 * 82.56689 * 24 23 22 44 44 H 1.08997 * 109.47404 * 89.98928 * 28 27 17 45 45 H 1.08991 * 109.47045 * 209.99610 * 28 27 17 46 46 H 1.09007 * 109.47014 * 329.99325 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8928 -0.6502 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3811 10 1 6.5005 2.2799 1.3807 11 1 6.3979 0.2157 2.6497 12 1 6.5967 0.1451 0.2343 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3412 2.6326 -0.4318 16 7 0.0785 3.2665 -2.5188 17 6 -1.1817 3.8528 -2.6381 18 6 -2.1450 3.8914 -1.6774 19 6 -3.2477 4.5696 -2.2041 20 6 -4.5424 4.8430 -1.4829 21 1 -5.3553 4.2988 -1.9635 22 6 -4.8427 6.3572 -1.5016 23 6 -5.4183 6.5953 -0.0774 24 6 -4.5932 5.5765 0.7487 25 8 -4.4303 4.4390 -0.1132 26 7 -2.9638 4.9265 -3.4305 27 7 -1.6659 4.4916 -3.7276 28 6 -0.9591 4.6907 -4.9952 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.8294 -0.0618 2.9495 35 1 2.2719 2.1231 -1.9978 36 1 0.6977 3.2915 -3.2650 37 1 -2.0702 3.4732 -0.6845 38 1 -3.9288 6.9321 -1.6515 39 1 -5.5825 6.5965 -2.2654 40 1 -6.4821 6.3609 -0.0406 41 1 -5.2314 7.6156 0.2575 42 1 -5.1355 5.2932 1.6507 43 1 -3.6214 5.9965 1.0086 44 1 -1.1639 3.8524 -5.6610 45 1 -1.3002 5.6156 -5.4600 46 1 0.1130 4.7521 -4.8077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278872950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:31 Heat of formation + Delta-G solvation = 11.361053 kcal Electronic energy + Delta-G solvation = -27881.635241 eV Core-core repulsion = 24001.618961 eV Total energy + Delta-G solvation = -3880.016279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.35993 -39.55939 -39.01619 -35.56393 -34.41540 -33.14861 -32.44210 -32.14996 -30.88930 -29.71534 -28.48310 -26.82219 -26.22008 -23.29472 -22.95513 -21.92194 -21.65817 -20.03244 -19.89006 -19.45880 -18.01613 -17.50652 -16.74086 -15.95122 -15.91012 -15.69350 -15.34355 -14.81883 -14.71193 -14.54922 -14.05067 -13.62627 -13.53389 -13.42187 -13.12186 -12.78427 -12.64900 -12.42378 -12.29308 -11.82427 -11.64062 -11.53607 -11.33129 -11.26536 -11.03357 -10.98878 -10.86233 -10.53723 -10.42530 -10.30493 -10.17617 -9.68270 -9.59024 -9.30131 -9.06619 -8.66166 -8.52929 -8.03357 -7.60897 -6.14750 -4.24569 2.00821 2.22727 3.04072 3.16266 3.23560 3.29566 3.30973 3.77893 3.89195 4.28907 4.36626 4.49517 4.70553 4.76586 4.82008 5.02313 5.06635 5.12660 5.16816 5.24734 5.39087 5.55712 5.64075 5.67277 5.74272 5.80521 5.87426 6.07919 6.24122 6.41043 6.43949 6.50112 6.67207 6.91237 6.95528 7.06705 7.14361 7.27690 7.34824 7.38426 7.49312 7.61633 7.79808 7.88542 8.00763 8.16601 8.67245 8.78770 9.17970 9.43122 10.90468 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016486 B = 0.003092 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.970508 B = 9052.853619 C = 9944.016212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.288 3.712 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.715 5.715 14 C 0.698 3.302 15 O -0.555 6.555 16 N -0.671 5.671 17 C 0.333 3.667 18 C -0.259 4.259 19 C 0.069 3.931 20 C 0.167 3.833 21 H 0.097 0.903 22 C -0.139 4.139 23 C -0.157 4.157 24 C 0.049 3.951 25 O -0.360 6.360 26 N -0.299 5.299 27 N -0.397 5.397 28 C 0.104 3.896 29 H 0.022 0.978 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.030 0.970 33 H 0.100 0.900 34 H 0.266 0.734 35 H 0.385 0.615 36 H 0.399 0.601 37 H 0.181 0.819 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.099 10.370 -10.981 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.186 3.814 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.366 5.366 14 C 0.398 3.602 15 O -0.430 6.430 16 N -0.322 5.322 17 C 0.112 3.888 18 C -0.291 4.291 19 C -0.097 4.097 20 C 0.107 3.893 21 H 0.114 0.886 22 C -0.177 4.177 23 C -0.195 4.195 24 C -0.028 4.028 25 O -0.277 6.277 26 N -0.124 5.124 27 N -0.186 5.186 28 C -0.038 4.038 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.217 0.783 36 H 0.233 0.767 37 H 0.198 0.802 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.986 10.542 -10.911 19.971 hybrid contribution 2.165 -0.230 -0.307 2.199 sum -10.821 10.312 -11.218 18.689 Atomic orbital electron populations 1.21822 0.98099 0.98062 1.01397 1.21966 0.92805 0.99726 1.02265 1.18765 0.94024 0.88936 0.79647 0.93015 1.21163 0.90570 1.39285 1.06506 0.92167 1.24869 0.98600 0.94779 0.95324 1.69883 1.35237 1.37276 1.09296 0.86505 0.84791 0.78287 0.77478 1.20211 1.21091 1.20201 1.45817 1.12782 1.58558 1.19483 1.15857 0.83905 0.78902 0.81533 1.90871 1.51180 1.63339 1.37605 1.42241 1.13621 1.59133 1.17188 1.17750 0.86797 0.95209 0.89002 1.21496 0.91890 1.12627 1.03046 1.22372 0.97104 0.97948 0.92256 1.20695 0.90979 0.94917 0.82722 0.88579 1.23118 1.02140 0.94928 0.97546 1.23329 1.00573 1.00530 0.95062 1.23422 0.99321 0.86236 0.93788 1.88528 1.93558 1.31283 1.14363 1.77229 0.93433 1.25511 1.16191 1.48324 1.12267 1.46844 1.11149 1.21723 0.95765 1.03575 0.82749 0.95915 0.92955 0.94317 0.95104 0.88180 0.92414 0.78256 0.76662 0.80215 0.90240 0.89658 0.90294 0.89926 0.89464 0.91906 0.91083 0.89186 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.29 7.03 2.24 -69.08 -0.15 6.87 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.19 11.29 55.43 0.63 -23.56 16 9 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 13 N -0.71 -14.19 5.03 -59.82 -0.30 -14.49 16 14 C 0.70 13.76 7.10 -86.93 -0.62 13.14 16 15 O -0.56 -12.87 10.60 5.29 0.06 -12.82 16 16 N -0.67 -10.41 5.42 -15.85 -0.09 -10.49 16 17 C 0.33 5.53 7.66 -153.14 -1.17 4.36 16 18 C -0.26 -4.80 9.00 -39.78 -0.36 -5.16 16 19 C 0.07 1.10 6.30 -82.44 -0.52 0.59 16 20 C 0.17 2.20 4.08 -27.16 -0.11 2.09 16 21 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 22 C -0.14 -1.42 6.53 -24.71 -0.16 -1.58 16 23 C -0.16 -1.35 7.16 -24.40 -0.17 -1.52 16 24 C 0.05 0.55 7.78 38.19 0.30 0.84 16 25 O -0.36 -5.31 10.39 -35.23 -0.37 -5.68 16 26 N -0.30 -4.59 12.54 33.65 0.42 -4.17 16 27 N -0.40 -5.62 4.02 -67.18 -0.27 -5.89 16 28 C 0.10 0.92 11.28 59.85 0.68 1.59 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 1.25 7.84 -51.93 -0.41 0.85 16 31 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.39 6.46 8.55 -40.82 -0.35 6.11 16 36 H 0.40 4.59 7.98 -40.82 -0.33 4.26 16 37 H 0.18 3.87 5.70 -52.49 -0.30 3.57 16 38 H 0.08 0.90 7.84 -51.93 -0.41 0.49 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.54 7.50 -51.92 -0.39 0.15 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -32.21 369.33 -8.84 -41.04 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.94 Total: 12.42 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -2.52 Total: 2.89 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.39 Total: -58.60 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.31 Total: -18.49 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.21 -8.84 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278872950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.403 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds