Wall clock time and date at job start Tue Mar 31 2020 12:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47342 * 2 1 4 4 H 1.08997 * 109.47563 * 54.99885 * 3 2 1 5 5 C 1.50695 * 109.47448 * 175.00253 * 3 2 1 6 6 H 1.08004 * 120.00546 * 120.27461 * 5 3 2 7 7 C 1.37885 * 119.99721 * 299.99712 * 5 3 2 8 8 N 1.31514 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47093 * 60.00328 * 9 7 5 11 11 H 1.48495 * 109.47002 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47239 * 300.00048 * 9 7 5 13 13 N 1.46506 * 109.47094 * 295.00136 * 3 2 1 14 14 C 1.34767 * 120.00042 * 84.99823 * 13 3 2 15 15 O 1.21590 * 120.00137 * 0.02562 * 14 13 3 16 16 N 1.34778 * 120.00019 * 180.02562 * 14 13 3 17 17 C 1.39504 * 119.99934 * 179.97438 * 16 14 13 18 18 C 1.36099 * 126.21726 * 0.03466 * 17 16 14 19 19 C 1.39764 * 107.82685 * 179.97438 * 18 17 16 20 20 C 1.50704 * 125.84107 * 179.97438 * 19 18 17 21 21 H 1.08995 * 109.82419 * 245.70102 * 20 19 18 22 22 C 1.54380 * 109.83226 * 124.81034 * 20 19 18 23 23 C 1.55445 * 102.19011 * 219.18370 * 22 20 19 24 24 C 1.54955 * 100.98727 * 34.03849 * 23 22 20 25 25 O 1.43241 * 109.82968 * 6.58518 * 20 19 18 26 26 N 1.30844 * 108.32147 * 359.97438 * 19 18 17 27 27 N 1.35256 * 126.21325 * 179.70842 * 17 16 14 28 28 C 1.46499 * 126.04540 * 0.03813 * 27 17 16 29 29 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47014 * 300.00240 * 1 2 3 31 31 H 1.08997 * 109.46959 * 60.00091 * 1 2 3 32 32 H 1.09001 * 109.47014 * 239.99760 * 2 1 3 33 33 H 1.09007 * 109.47025 * 119.99887 * 2 1 3 34 34 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00021 * 265.00203 * 13 3 2 36 36 H 0.97000 * 120.00044 * 0.02562 * 16 14 13 37 37 H 1.07999 * 126.08939 * 0.02562 * 18 17 16 38 38 H 1.09003 * 110.84777 * 337.32539 * 22 20 19 39 39 H 1.08998 * 110.84893 * 100.94024 * 22 20 19 40 40 H 1.09000 * 111.06242 * 276.12597 * 23 22 20 41 41 H 1.09001 * 111.18625 * 152.00582 * 23 22 20 42 42 H 1.08999 * 110.31045 * 204.68883 * 24 23 22 43 43 H 1.09002 * 110.39226 * 82.56689 * 24 23 22 44 44 H 1.08997 * 109.47404 * 89.98928 * 28 27 17 45 45 H 1.08991 * 109.47045 * 209.99610 * 28 27 17 46 46 H 1.09007 * 109.47014 * 329.99325 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8928 -0.6502 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3811 10 1 6.5005 2.2799 1.3807 11 1 6.3979 0.2157 2.6497 12 1 6.5967 0.1451 0.2343 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3412 2.6326 -0.4318 16 7 0.0785 3.2665 -2.5188 17 6 -1.1817 3.8528 -2.6381 18 6 -2.1450 3.8914 -1.6774 19 6 -3.2477 4.5696 -2.2041 20 6 -4.5424 4.8430 -1.4829 21 1 -5.3553 4.2988 -1.9635 22 6 -4.8427 6.3572 -1.5016 23 6 -5.4183 6.5953 -0.0774 24 6 -4.5932 5.5765 0.7487 25 8 -4.4303 4.4390 -0.1132 26 7 -2.9638 4.9265 -3.4305 27 7 -1.6659 4.4916 -3.7276 28 6 -0.9591 4.6907 -4.9952 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.8294 -0.0618 2.9495 35 1 2.2719 2.1231 -1.9978 36 1 0.6977 3.2915 -3.2650 37 1 -2.0702 3.4732 -0.6845 38 1 -3.9288 6.9321 -1.6515 39 1 -5.5825 6.5965 -2.2654 40 1 -6.4821 6.3609 -0.0406 41 1 -5.2314 7.6156 0.2575 42 1 -5.1355 5.2932 1.6507 43 1 -3.6214 5.9965 1.0086 44 1 -1.1639 3.8524 -5.6610 45 1 -1.3002 5.6156 -5.4600 46 1 0.1130 4.7521 -4.8077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278872950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:30 Heat of formation + Delta-G solvation = -10.979959 kcal Electronic energy + Delta-G solvation = -27882.604020 eV Core-core repulsion = 24001.618961 eV Total energy + Delta-G solvation = -3880.985058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.61670 -41.00976 -40.10093 -37.31443 -35.91572 -34.37823 -34.21863 -33.04577 -32.70323 -30.69000 -29.84795 -28.67351 -27.16639 -25.13577 -24.07517 -23.29765 -22.59334 -21.58481 -21.27645 -21.04823 -19.49167 -18.82734 -17.81309 -17.61152 -17.19534 -16.95716 -16.77974 -16.32122 -16.15759 -15.74081 -15.44583 -15.11509 -14.57634 -14.54517 -14.48631 -14.20239 -14.01965 -13.61697 -13.45772 -13.33844 -13.16298 -12.89396 -12.66551 -12.65030 -12.58904 -12.18998 -12.13987 -12.09660 -11.92030 -11.75348 -11.63123 -11.51851 -11.08253 -10.94245 -10.67305 -10.51757 -9.83728 -9.71776 -9.01032 -8.14307 -6.31648 0.75177 0.98401 1.47348 1.48661 1.56474 1.70605 1.95225 2.33247 2.43688 2.84098 3.15219 3.28948 3.46735 3.65128 3.88518 3.97100 4.20462 4.26170 4.39244 4.47387 4.51531 4.53535 4.58876 4.62896 4.64212 4.76880 4.84660 4.88537 4.92862 4.99093 5.03952 5.08503 5.09669 5.26991 5.28943 5.45325 5.51152 5.60732 5.66051 5.80437 5.86123 5.96902 6.12045 6.17495 6.23206 6.70164 6.75856 7.17473 7.36070 7.64427 8.90942 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016486 B = 0.003092 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.970508 B = 9052.853619 C = 9944.016212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.298 3.702 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.707 5.707 14 C 0.699 3.301 15 O -0.593 6.593 16 N -0.649 5.649 17 C 0.328 3.672 18 C -0.295 4.295 19 C 0.065 3.935 20 C 0.158 3.842 21 H 0.108 0.892 22 C -0.131 4.131 23 C -0.142 4.142 24 C 0.037 3.963 25 O -0.392 6.392 26 N -0.297 5.297 27 N -0.386 5.386 28 C 0.089 3.911 29 H 0.042 0.958 30 H 0.025 0.975 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.265 0.735 35 H 0.404 0.596 36 H 0.422 0.578 37 H 0.143 0.857 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.046 0.954 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.775 11.482 -13.591 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.195 3.805 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.360 5.360 14 C 0.398 3.602 15 O -0.470 6.470 16 N -0.302 5.302 17 C 0.105 3.895 18 C -0.328 4.328 19 C -0.101 4.101 20 C 0.098 3.902 21 H 0.126 0.874 22 C -0.170 4.170 23 C -0.180 4.180 24 C -0.039 4.039 25 O -0.311 6.311 26 N -0.122 5.122 27 N -0.175 5.175 28 C -0.050 4.050 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.260 0.740 37 H 0.160 0.840 38 H 0.084 0.916 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.125 0.875 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.649 11.690 -13.622 21.959 hybrid contribution 2.028 -0.548 0.470 2.153 sum -10.621 11.142 -13.152 20.246 Atomic orbital electron populations 1.21645 0.97178 0.98889 1.00136 1.21812 0.93460 0.99248 1.01451 1.18312 0.93549 0.88769 0.79884 0.98101 1.21518 0.91143 1.39053 1.06935 0.90752 1.25749 1.03212 0.94402 0.94996 1.70044 1.37129 1.38142 1.09835 0.85426 0.79150 0.78386 0.77519 1.19719 1.21395 1.18873 1.45378 1.13373 1.58504 1.18789 1.15893 0.83349 0.78820 0.82093 1.90888 1.52194 1.64485 1.39452 1.41719 1.13802 1.58044 1.16598 1.17631 0.86575 0.95514 0.89747 1.21303 0.94243 1.14713 1.02502 1.22719 0.97589 0.97345 0.92411 1.20982 0.89987 0.97220 0.81975 0.87412 1.23090 1.02242 0.92302 0.99325 1.23305 1.00987 1.00580 0.93087 1.23625 0.99395 0.86398 0.94482 1.88500 1.93697 1.33332 1.15553 1.77174 0.94091 1.25269 1.15642 1.48675 1.11781 1.45241 1.11792 1.22240 0.96784 1.05278 0.80726 0.93876 0.95555 0.94211 0.93870 0.90792 0.92571 0.76099 0.74003 0.83959 0.91632 0.87294 0.88298 0.88019 0.88082 0.93535 0.89175 0.87507 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.51 71.98 0.61 -4.98 16 2 C -0.12 -5.89 5.45 30.59 0.17 -5.72 16 3 C 0.30 14.93 2.24 44.24 0.10 15.03 16 4 H 0.00 0.07 7.58 -2.39 -0.02 0.05 16 5 C -0.55 -28.07 8.73 25.60 0.22 -27.85 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -51.52 11.29 21.45 0.24 -51.28 16 9 Si 0.97 41.12 29.54 68.60 2.03 43.15 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 13 N -0.71 -28.05 5.03 -461.43 -2.32 -30.37 16 14 C 0.70 27.95 7.10 179.06 1.27 29.22 16 15 O -0.59 -29.01 10.60 -4.00 -0.04 -29.06 16 16 N -0.65 -19.60 5.42 -322.30 -1.75 -21.35 16 17 C 0.33 10.78 7.66 131.31 1.01 11.78 16 18 C -0.30 -11.42 9.00 22.14 0.20 -11.22 16 19 C 0.06 2.11 6.30 43.08 0.27 2.38 16 20 C 0.16 4.19 4.08 30.32 0.12 4.31 16 21 H 0.11 2.52 8.14 -2.39 -0.02 2.51 16 22 C -0.13 -2.51 6.53 31.90 0.21 -2.30 16 23 C -0.14 -2.20 7.16 32.10 0.23 -1.97 16 24 C 0.04 0.85 7.78 72.65 0.57 1.41 16 25 O -0.39 -12.14 10.39 -148.98 -1.55 -13.69 16 26 N -0.30 -8.79 12.54 -47.44 -0.60 -9.38 16 27 N -0.39 -10.27 4.02 -366.44 -1.47 -11.74 16 28 C 0.09 1.28 11.28 127.77 1.44 2.72 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 31 H 0.04 1.80 5.64 -2.39 -0.01 1.78 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 4.04 5.95 -2.38 -0.01 4.03 16 34 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.40 12.93 8.55 -92.71 -0.79 12.13 16 36 H 0.42 8.68 7.98 -92.71 -0.74 7.94 16 37 H 0.14 6.67 5.70 -2.91 -0.02 6.65 16 38 H 0.06 1.43 7.84 -2.39 -0.02 1.41 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 44 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.10 1.00 7.50 -2.38 -0.02 0.98 16 Total: -1.00 -73.83 369.33 0.89 -72.94 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.52 Total: 36.61 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 6.87 Total: 14.16 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -5.89 Total: -124.12 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -1.59 Total: -42.75 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -73.83 0.89 -72.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278872950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.956 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds