Wall clock time and date at job start Tue Mar 31 2020 12:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 H 1.09000 * 109.47267 * 305.69558 * 3 2 1 5 5 C 1.50703 * 109.47365 * 185.69080 * 3 2 1 6 6 H 1.08004 * 119.99450 * 275.00827 * 5 3 2 7 7 C 1.37870 * 120.00111 * 95.00623 * 5 3 2 8 8 N 1.31515 * 120.00165 * 184.83703 * 7 5 3 9 9 Si 1.86804 * 120.00062 * 4.82886 * 7 5 3 10 10 H 1.48497 * 109.46769 * 84.86274 * 9 7 5 11 11 H 1.48502 * 109.47379 * 204.86194 * 9 7 5 12 12 H 1.48498 * 109.47272 * 324.86319 * 9 7 5 13 13 N 1.46501 * 109.47003 * 65.69039 * 3 2 1 14 14 C 1.34776 * 120.00040 * 274.99838 * 13 3 2 15 15 O 1.21591 * 119.99963 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99851 * 179.97438 * 14 13 3 17 17 C 1.39507 * 119.99642 * 180.02562 * 16 14 13 18 18 C 1.36097 * 126.21645 * 0.15399 * 17 16 14 19 19 C 1.39769 * 107.82343 * 180.26008 * 18 17 16 20 20 C 1.50704 * 125.83730 * 179.79629 * 19 18 17 21 21 H 1.08997 * 109.82179 * 245.67672 * 20 19 18 22 22 C 1.54382 * 109.82976 * 124.79434 * 20 19 18 23 23 C 1.55444 * 102.18719 * 219.17871 * 22 20 19 24 24 C 1.54951 * 100.98754 * 34.04265 * 23 22 20 25 25 O 1.43236 * 109.83156 * 6.56812 * 20 19 18 26 26 N 1.30844 * 108.32169 * 359.75561 * 19 18 17 27 27 N 1.35254 * 126.21001 * 179.97438 * 17 16 14 28 28 C 1.46498 * 126.04802 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.47268 * 299.99978 * 1 2 3 30 30 H 1.09001 * 109.46965 * 60.00304 * 1 2 3 31 31 H 1.09001 * 109.46702 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47138 * 240.00703 * 2 1 3 33 33 H 1.08996 * 109.47296 * 120.00338 * 2 1 3 34 34 H 0.96995 * 119.99868 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99679 * 95.00108 * 13 3 2 36 36 H 0.96996 * 120.00430 * 0.02562 * 16 14 13 37 37 H 1.08001 * 126.08824 * 359.97438 * 18 17 16 38 38 H 1.09000 * 110.84707 * 337.32374 * 22 20 19 39 39 H 1.09004 * 110.84731 * 100.93809 * 22 20 19 40 40 H 1.08997 * 111.06419 * 276.12225 * 23 22 20 41 41 H 1.09001 * 111.18214 * 152.00972 * 23 22 20 42 42 H 1.09001 * 110.30620 * 204.68687 * 24 23 22 43 43 H 1.08996 * 110.39239 * 82.56242 * 24 23 22 44 44 H 1.09007 * 109.46651 * 269.70889 * 28 27 17 45 45 H 1.08997 * 109.46883 * 29.70703 * 28 27 17 46 46 H 1.08992 * 109.47339 * 149.71193 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4449 -0.1409 6 1 4.1650 1.3334 0.7332 7 6 4.1157 1.5895 -1.3855 8 7 5.4205 1.4965 -1.5216 9 14 3.0419 1.9172 -2.8785 10 1 2.7755 3.3741 -2.9863 11 1 3.7403 1.4498 -4.1028 12 1 1.7563 1.1883 -2.7332 13 7 1.6667 2.0924 1.2588 14 6 0.4508 2.6588 1.3900 15 8 -0.3365 2.6300 0.4638 16 7 0.1071 3.2563 2.5482 17 6 -1.1517 3.8421 2.6842 18 6 -2.1270 3.8813 1.7359 19 6 -3.2212 4.5633 2.2755 20 6 -4.5225 4.8430 1.5687 21 1 -4.6398 5.9165 1.4214 22 6 -5.7002 4.2974 2.4046 23 6 -6.6411 3.7217 1.3093 24 6 -5.6093 3.2135 0.2710 25 8 -4.5414 4.1737 0.3025 26 7 -2.9227 4.9167 3.4994 27 7 -1.6256 4.4712 3.7837 28 6 -0.9068 4.6596 5.0463 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 5.8252 1.5985 -2.3971 35 1 2.2946 2.1151 1.9977 36 1 0.7350 3.2789 3.2872 37 1 -2.0647 3.4642 0.7416 38 1 -5.3647 3.5106 3.0802 39 1 -6.1898 5.1005 2.9555 40 1 -7.2729 4.5024 0.8857 41 1 -7.2432 2.9009 1.6990 42 1 -6.0577 3.1787 -0.7219 43 1 -5.2402 2.2276 0.5535 44 1 -1.1093 3.8179 5.7087 45 1 0.1637 4.7178 4.8496 46 1 -1.2400 5.5830 5.5198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278872952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:34 Heat of formation + Delta-G solvation = 10.420591 kcal Electronic energy + Delta-G solvation = -28029.170895 eV Core-core repulsion = 24149.113835 eV Total energy + Delta-G solvation = -3880.057061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.42122 -39.66447 -39.09848 -35.72435 -34.49909 -33.20933 -32.42533 -32.20835 -31.41253 -29.77388 -28.59828 -27.31552 -26.27017 -23.20100 -22.90319 -22.03768 -21.76142 -20.11645 -19.96119 -19.64269 -18.15901 -17.56057 -16.81232 -16.37231 -16.01076 -15.78060 -15.44921 -14.97900 -14.69625 -14.50838 -14.15731 -13.70002 -13.61692 -13.49171 -13.15570 -12.92242 -12.78968 -12.58429 -12.36919 -11.94365 -11.90211 -11.87490 -11.66783 -11.38741 -11.05188 -10.96147 -10.79101 -10.73143 -10.54468 -10.47666 -9.94428 -9.85669 -9.73046 -9.43119 -9.21883 -8.74471 -8.71416 -8.20475 -7.69847 -6.27712 -4.32109 1.95342 2.16529 2.97612 3.08123 3.28140 3.34711 3.42631 3.72117 3.77611 4.30408 4.31152 4.44865 4.60579 4.69559 4.72223 4.99104 5.01501 5.06689 5.13748 5.22576 5.34301 5.50532 5.59015 5.61472 5.68230 5.74950 5.81521 6.02386 6.05677 6.09941 6.16515 6.25264 6.35895 6.60550 6.77681 6.87261 6.92778 6.94153 7.01935 7.13568 7.30436 7.33124 7.41544 7.54478 7.87758 8.19552 8.57685 8.73342 9.04640 9.34271 10.83600 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003521 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.271978 B = 7950.088816 C = 9007.277023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.254 3.746 4 H 0.054 0.946 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.083 3.917 8 N -0.887 5.887 9 Si 0.873 3.127 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.257 1.257 13 N -0.710 5.710 14 C 0.698 3.302 15 O -0.561 6.561 16 N -0.670 5.670 17 C 0.333 3.667 18 C -0.259 4.259 19 C 0.069 3.931 20 C 0.167 3.833 21 H 0.097 0.903 22 C -0.139 4.139 23 C -0.157 4.157 24 C 0.049 3.951 25 O -0.360 6.360 26 N -0.298 5.298 27 N -0.396 5.396 28 C 0.103 3.897 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.269 0.731 35 H 0.390 0.610 36 H 0.401 0.599 37 H 0.180 0.820 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.389 4.649 11.492 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.151 3.849 4 H 0.071 0.929 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.181 1.181 13 N -0.362 5.362 14 C 0.398 3.602 15 O -0.436 6.436 16 N -0.320 5.320 17 C 0.112 3.888 18 C -0.291 4.291 19 C -0.097 4.097 20 C 0.107 3.893 21 H 0.115 0.885 22 C -0.177 4.177 23 C -0.195 4.195 24 C -0.028 4.028 25 O -0.278 6.278 26 N -0.122 5.122 27 N -0.185 5.185 28 C -0.039 4.039 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.223 0.777 36 H 0.235 0.765 37 H 0.197 0.803 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.010 5.179 11.408 22.767 hybrid contribution 0.686 -0.247 -0.330 0.800 sum -18.324 4.931 11.079 21.973 Atomic orbital electron populations 1.21893 0.97229 0.98803 1.02207 1.22091 0.93820 0.99351 1.01237 1.19139 0.95339 0.88858 0.81520 0.92861 1.20986 0.88581 1.51904 0.95490 0.90356 1.24931 0.94898 0.93500 0.98874 1.69875 1.09807 1.47968 1.24637 0.86904 0.81301 0.79808 0.82068 1.19755 1.21182 1.18131 1.45981 1.12578 1.58509 1.19174 1.15954 0.83934 0.78842 0.81495 1.90859 1.50618 1.63595 1.38540 1.42217 1.13496 1.59163 1.17149 1.17752 0.86762 0.95406 0.88903 1.21479 0.91708 1.12813 1.03126 1.22365 0.97138 0.98009 0.92168 1.20702 0.88543 0.97159 0.82935 0.88535 1.23119 0.94836 1.01670 0.98096 1.23326 0.98289 1.01473 0.96403 1.23416 0.86773 0.92857 0.99706 1.88525 1.52929 1.54131 1.32189 1.77239 0.93393 1.25203 1.16410 1.48334 1.12348 1.46879 1.10901 1.21741 0.95599 1.03671 0.82863 0.93184 0.92908 0.95203 0.91951 0.93082 0.92142 0.77688 0.76457 0.80279 0.90241 0.89619 0.90269 0.89918 0.89495 0.91966 0.91041 0.90205 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.53 37.16 0.32 -2.53 16 2 C -0.13 -2.65 5.59 -26.73 -0.15 -2.80 16 3 C 0.25 5.79 1.89 -69.08 -0.13 5.66 16 4 H 0.05 1.34 4.73 -51.93 -0.25 1.10 16 5 C -0.53 -13.80 9.05 -34.44 -0.31 -14.11 16 6 H 0.08 2.14 8.06 -52.48 -0.42 1.71 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 9 Si 0.87 21.27 26.99 -169.99 -4.59 16.68 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.26 -6.15 6.82 56.52 0.39 -5.77 16 13 N -0.71 -13.54 5.03 -59.81 -0.30 -13.84 16 14 C 0.70 13.16 7.13 -86.92 -0.62 12.55 16 15 O -0.56 -12.35 10.60 5.29 0.06 -12.30 16 16 N -0.67 -10.02 5.42 -15.84 -0.09 -10.11 16 17 C 0.33 5.35 7.66 -153.14 -1.17 4.18 16 18 C -0.26 -4.66 9.00 -39.78 -0.36 -5.02 16 19 C 0.07 1.07 6.30 -82.44 -0.52 0.56 16 20 C 0.17 2.13 4.08 -27.16 -0.11 2.02 16 21 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 22 C -0.14 -1.36 6.53 -24.71 -0.16 -1.52 16 23 C -0.16 -1.27 7.16 -24.40 -0.17 -1.45 16 24 C 0.05 0.52 7.78 38.19 0.30 0.82 16 25 O -0.36 -5.13 10.39 -35.23 -0.37 -5.50 16 26 N -0.30 -4.47 12.54 33.65 0.42 -4.04 16 27 N -0.40 -5.45 4.02 -67.18 -0.27 -5.72 16 28 C 0.10 0.88 11.29 59.85 0.68 1.56 16 29 H 0.05 1.00 5.63 -51.93 -0.29 0.71 16 30 H 0.05 1.12 7.88 -51.93 -0.41 0.71 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.39 6.39 8.61 -40.82 -0.35 6.04 16 36 H 0.40 4.45 7.97 -40.82 -0.33 4.12 16 37 H 0.18 3.72 5.70 -52.49 -0.30 3.42 16 38 H 0.08 0.86 7.84 -51.93 -0.41 0.45 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.53 7.49 -51.93 -0.39 0.14 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -33.14 369.22 -8.26 -41.39 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.94 Total: 10.66 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.52 Total: 2.07 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.54 Total: -58.57 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.31 Total: -17.79 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.59 Total: 16.68 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.14 -8.26 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278872952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.815 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds