Wall clock time and date at job start Tue Mar 31 2020 12:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 H 1.09000 * 109.47267 * 305.69558 * 3 2 1 5 5 C 1.50703 * 109.47365 * 185.69080 * 3 2 1 6 6 H 1.08004 * 119.99450 * 275.00827 * 5 3 2 7 7 C 1.37870 * 120.00111 * 95.00623 * 5 3 2 8 8 N 1.31515 * 120.00165 * 184.83703 * 7 5 3 9 9 Si 1.86804 * 120.00062 * 4.82886 * 7 5 3 10 10 H 1.48497 * 109.46769 * 84.86274 * 9 7 5 11 11 H 1.48502 * 109.47379 * 204.86194 * 9 7 5 12 12 H 1.48498 * 109.47272 * 324.86319 * 9 7 5 13 13 N 1.46501 * 109.47003 * 65.69039 * 3 2 1 14 14 C 1.34776 * 120.00040 * 274.99838 * 13 3 2 15 15 O 1.21591 * 119.99963 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99851 * 179.97438 * 14 13 3 17 17 C 1.39507 * 119.99642 * 180.02562 * 16 14 13 18 18 C 1.36097 * 126.21645 * 0.15399 * 17 16 14 19 19 C 1.39769 * 107.82343 * 180.26008 * 18 17 16 20 20 C 1.50704 * 125.83730 * 179.79629 * 19 18 17 21 21 H 1.08997 * 109.82179 * 245.67672 * 20 19 18 22 22 C 1.54382 * 109.82976 * 124.79434 * 20 19 18 23 23 C 1.55444 * 102.18719 * 219.17871 * 22 20 19 24 24 C 1.54951 * 100.98754 * 34.04265 * 23 22 20 25 25 O 1.43236 * 109.83156 * 6.56812 * 20 19 18 26 26 N 1.30844 * 108.32169 * 359.75561 * 19 18 17 27 27 N 1.35254 * 126.21001 * 179.97438 * 17 16 14 28 28 C 1.46498 * 126.04802 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.47268 * 299.99978 * 1 2 3 30 30 H 1.09001 * 109.46965 * 60.00304 * 1 2 3 31 31 H 1.09001 * 109.46702 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47138 * 240.00703 * 2 1 3 33 33 H 1.08996 * 109.47296 * 120.00338 * 2 1 3 34 34 H 0.96995 * 119.99868 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99679 * 95.00108 * 13 3 2 36 36 H 0.96996 * 120.00430 * 0.02562 * 16 14 13 37 37 H 1.08001 * 126.08824 * 359.97438 * 18 17 16 38 38 H 1.09000 * 110.84707 * 337.32374 * 22 20 19 39 39 H 1.09004 * 110.84731 * 100.93809 * 22 20 19 40 40 H 1.08997 * 111.06419 * 276.12225 * 23 22 20 41 41 H 1.09001 * 111.18214 * 152.00972 * 23 22 20 42 42 H 1.09001 * 110.30620 * 204.68687 * 24 23 22 43 43 H 1.08996 * 110.39239 * 82.56242 * 24 23 22 44 44 H 1.09007 * 109.46651 * 269.70889 * 28 27 17 45 45 H 1.08997 * 109.46883 * 29.70703 * 28 27 17 46 46 H 1.08992 * 109.47339 * 149.71193 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4449 -0.1409 6 1 4.1650 1.3334 0.7332 7 6 4.1157 1.5895 -1.3855 8 7 5.4205 1.4965 -1.5216 9 14 3.0419 1.9172 -2.8785 10 1 2.7755 3.3741 -2.9863 11 1 3.7403 1.4498 -4.1028 12 1 1.7563 1.1883 -2.7332 13 7 1.6667 2.0924 1.2588 14 6 0.4508 2.6588 1.3900 15 8 -0.3365 2.6300 0.4638 16 7 0.1071 3.2563 2.5482 17 6 -1.1517 3.8421 2.6842 18 6 -2.1270 3.8813 1.7359 19 6 -3.2212 4.5633 2.2755 20 6 -4.5225 4.8430 1.5687 21 1 -4.6398 5.9165 1.4214 22 6 -5.7002 4.2974 2.4046 23 6 -6.6411 3.7217 1.3093 24 6 -5.6093 3.2135 0.2710 25 8 -4.5414 4.1737 0.3025 26 7 -2.9227 4.9167 3.4994 27 7 -1.6256 4.4712 3.7837 28 6 -0.9068 4.6596 5.0463 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 5.8252 1.5985 -2.3971 35 1 2.2946 2.1151 1.9977 36 1 0.7350 3.2789 3.2872 37 1 -2.0647 3.4642 0.7416 38 1 -5.3647 3.5106 3.0802 39 1 -6.1898 5.1005 2.9555 40 1 -7.2729 4.5024 0.8857 41 1 -7.2432 2.9009 1.6990 42 1 -6.0577 3.1787 -0.7219 43 1 -5.2402 2.2276 0.5535 44 1 -1.1093 3.8179 5.7087 45 1 0.1637 4.7178 4.8496 46 1 -1.2400 5.5830 5.5198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278872952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:33 Heat of formation + Delta-G solvation = -13.162012 kcal Electronic energy + Delta-G solvation = -28030.193514 eV Core-core repulsion = 24149.113835 eV Total energy + Delta-G solvation = -3881.079679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.62853 -41.05855 -40.10919 -37.37877 -35.92880 -34.43330 -34.27958 -33.10217 -32.96637 -30.70051 -29.96074 -29.04870 -27.17270 -24.87144 -24.07912 -23.35458 -22.59642 -21.57126 -21.32664 -21.09379 -19.66986 -18.86026 -18.19026 -17.66644 -17.26262 -16.94859 -16.80574 -16.33204 -16.12426 -15.78223 -15.50767 -15.11796 -14.76397 -14.55477 -14.51367 -14.34334 -14.04364 -13.77408 -13.72291 -13.51920 -13.33241 -12.93624 -12.70869 -12.65549 -12.52923 -12.39718 -12.12926 -11.94188 -11.87796 -11.80793 -11.67450 -11.53903 -11.21898 -10.97168 -10.83494 -10.67606 -9.88803 -9.74861 -9.02425 -8.39317 -6.44944 0.74578 0.96206 1.31035 1.36128 1.46625 1.69766 1.92377 2.27628 2.29790 2.83506 2.94871 3.27705 3.45986 3.64922 3.87954 3.96867 4.20175 4.25762 4.33511 4.38544 4.43199 4.45699 4.51539 4.57934 4.61962 4.64259 4.82141 4.84467 4.89124 4.93151 4.99781 5.03776 5.05415 5.16060 5.24440 5.27246 5.28467 5.41690 5.57139 5.68511 5.74980 5.85170 6.05024 6.12147 6.25720 6.61193 6.69779 7.10047 7.22571 7.56141 8.75302 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003521 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.271978 B = 7950.088816 C = 9007.277023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.123 4.123 3 C 0.261 3.739 4 H 0.031 0.969 5 C -0.524 4.524 6 H 0.061 0.939 7 C 0.038 3.962 8 N -0.928 5.928 9 Si 0.921 3.079 10 H -0.278 1.278 11 H -0.278 1.278 12 H -0.253 1.253 13 N -0.706 5.706 14 C 0.700 3.300 15 O -0.592 6.592 16 N -0.650 5.650 17 C 0.327 3.673 18 C -0.293 4.293 19 C 0.065 3.935 20 C 0.158 3.842 21 H 0.106 0.894 22 C -0.131 4.131 23 C -0.143 4.143 24 C 0.038 3.962 25 O -0.392 6.392 26 N -0.298 5.298 27 N -0.386 5.386 28 C 0.089 3.911 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.271 0.729 35 H 0.405 0.595 36 H 0.422 0.578 37 H 0.147 0.853 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.231 4.979 13.326 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.157 3.843 4 H 0.049 0.951 5 C -0.562 4.562 6 H 0.079 0.921 7 C -0.163 4.163 8 N -0.566 5.566 9 Si 0.746 3.254 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.177 1.177 13 N -0.360 5.360 14 C 0.400 3.600 15 O -0.470 6.470 16 N -0.302 5.302 17 C 0.105 3.895 18 C -0.326 4.326 19 C -0.101 4.101 20 C 0.098 3.902 21 H 0.124 0.876 22 C -0.170 4.170 23 C -0.180 4.180 24 C -0.038 4.038 25 O -0.310 6.310 26 N -0.123 5.123 27 N -0.175 5.175 28 C -0.051 4.051 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.240 0.760 36 H 0.260 0.740 37 H 0.164 0.836 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.120 0.880 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.852 5.524 13.322 25.354 hybrid contribution 1.255 -0.326 -0.778 1.512 sum -19.598 5.198 12.544 23.842 Atomic orbital electron populations 1.21741 0.95996 1.00066 1.01068 1.22002 0.94766 0.97941 1.01470 1.18844 0.93163 0.89974 0.82321 0.95129 1.21175 0.90078 1.50313 0.94646 0.92110 1.25524 0.95636 0.93912 1.01236 1.69960 1.11149 1.50182 1.25307 0.86145 0.80150 0.79195 0.79937 1.20369 1.20386 1.17745 1.45505 1.13257 1.58649 1.18550 1.15900 0.83310 0.78736 0.82060 1.90874 1.51428 1.64555 1.40095 1.41734 1.13686 1.58141 1.16634 1.17647 0.86549 0.95703 0.89625 1.21316 0.93815 1.14788 1.02652 1.22715 0.97676 0.97424 0.92243 1.20965 0.88515 0.97749 0.82930 0.87608 1.23086 0.93990 1.01873 0.98012 1.23304 0.97497 1.02432 0.94800 1.23622 0.86874 0.91802 1.01513 1.88496 1.54493 1.54911 1.33112 1.77188 0.94062 1.25090 1.15981 1.48676 1.11912 1.45394 1.11525 1.22234 0.96471 1.05338 0.81008 0.93554 0.94827 0.92643 0.92847 0.91709 0.92004 0.75978 0.73991 0.83591 0.91528 0.87491 0.88468 0.87984 0.88112 0.93242 0.89038 0.87988 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 8.53 71.98 0.61 -4.46 16 2 C -0.12 -5.07 5.59 30.59 0.17 -4.89 16 3 C 0.26 11.83 1.89 44.25 0.08 11.92 16 4 H 0.03 1.55 4.73 -2.39 -0.01 1.54 16 5 C -0.52 -27.30 9.05 25.60 0.23 -27.07 16 6 H 0.06 3.34 8.06 -2.91 -0.02 3.31 16 7 C 0.04 2.09 5.47 84.65 0.46 2.55 16 8 N -0.93 -54.30 13.96 21.44 0.30 -54.00 16 9 Si 0.92 44.34 26.99 68.60 1.85 46.19 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.25 -11.94 6.82 99.48 0.68 -11.27 16 13 N -0.71 -26.39 5.03 -461.40 -2.32 -28.71 16 14 C 0.70 26.09 7.13 179.05 1.28 27.37 16 15 O -0.59 -26.53 10.60 -4.00 -0.04 -26.57 16 16 N -0.65 -18.60 5.42 -322.30 -1.75 -20.35 16 17 C 0.33 10.25 7.66 131.31 1.01 11.25 16 18 C -0.29 -10.74 9.00 22.14 0.20 -10.54 16 19 C 0.06 2.02 6.30 43.08 0.27 2.29 16 20 C 0.16 3.98 4.08 30.32 0.12 4.11 16 21 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 22 C -0.13 -2.35 6.53 31.90 0.21 -2.14 16 23 C -0.14 -2.01 7.16 32.10 0.23 -1.78 16 24 C 0.04 0.79 7.78 72.65 0.57 1.36 16 25 O -0.39 -11.39 10.39 -148.98 -1.55 -12.94 16 26 N -0.30 -8.55 12.54 -47.44 -0.60 -9.14 16 27 N -0.39 -9.91 4.02 -366.45 -1.47 -11.39 16 28 C 0.09 1.24 11.29 127.77 1.44 2.68 16 29 H 0.05 1.81 5.63 -2.39 -0.01 1.80 16 30 H 0.03 1.40 7.88 -2.39 -0.02 1.39 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.40 12.71 8.61 -92.71 -0.80 11.92 16 36 H 0.42 8.32 7.97 -92.71 -0.74 7.58 16 37 H 0.15 6.40 5.70 -2.91 -0.02 6.38 16 38 H 0.07 1.36 7.84 -2.39 -0.02 1.34 16 39 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.10 0.98 7.49 -2.39 -0.02 0.96 16 46 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -73.57 369.22 0.76 -72.82 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.55 Total: 31.45 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 6.89 Total: 12.64 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -5.84 Total: -123.58 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.59 Total: -39.51 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.85 Total: 46.19 kcal Total: -73.57 0.76 -72.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278872952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.654 kcal (2) G-P(sol) polarization free energy of solvation -73.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds