Wall clock time and date at job start Tue Mar 31 2020 12:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47517 * 2 1 4 4 H 1.08999 * 109.46798 * 305.69079 * 3 2 1 5 5 C 1.50703 * 109.47280 * 185.68890 * 3 2 1 6 6 H 1.08000 * 119.99846 * 275.00814 * 5 3 2 7 7 C 1.37874 * 119.99833 * 95.00138 * 5 3 2 8 8 N 1.31513 * 120.00128 * 184.82872 * 7 5 3 9 9 Si 1.86802 * 119.99917 * 4.83305 * 7 5 3 10 10 H 1.48499 * 109.47225 * 84.86181 * 9 7 5 11 11 H 1.48502 * 109.46866 * 204.85732 * 9 7 5 12 12 H 1.48498 * 109.47312 * 324.85828 * 9 7 5 13 13 N 1.46497 * 109.46773 * 65.68896 * 3 2 1 14 14 C 1.34780 * 119.99886 * 274.99871 * 13 3 2 15 15 O 1.21580 * 120.00210 * 0.02562 * 14 13 3 16 16 N 1.34781 * 119.99610 * 180.02562 * 14 13 3 17 17 C 1.39509 * 119.99547 * 180.02562 * 16 14 13 18 18 C 1.36103 * 126.21637 * 0.02562 * 17 16 14 19 19 C 1.39763 * 107.82472 * 179.97438 * 18 17 16 20 20 C 1.50698 * 125.83810 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.87092 * 4.30119 * 20 19 18 22 22 C 1.54104 * 109.87972 * 125.30727 * 20 19 18 23 23 C 1.54809 * 104.18811 * 121.60014 * 22 20 19 24 24 C 1.55004 * 102.09102 * 20.88690 * 23 22 20 25 25 O 1.43745 * 109.87790 * 243.29210 * 20 19 18 26 26 N 1.30846 * 108.32403 * 0.24649 * 19 18 17 27 27 N 1.35250 * 126.21263 * 180.02562 * 17 16 14 28 28 C 1.46497 * 126.04406 * 0.02562 * 27 17 16 29 29 H 1.09002 * 109.47041 * 59.99914 * 1 2 3 30 30 H 1.09002 * 109.47301 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47132 * 300.00271 * 1 2 3 32 32 H 1.08996 * 109.47267 * 239.99708 * 2 1 3 33 33 H 1.09002 * 109.47041 * 120.00086 * 2 1 3 34 34 H 0.96996 * 120.00153 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00066 * 95.00918 * 13 3 2 36 36 H 0.96996 * 120.00396 * 0.02562 * 16 14 13 37 37 H 1.07995 * 126.08725 * 359.97438 * 18 17 16 38 38 H 1.08991 * 110.48826 * 240.28411 * 22 20 19 39 39 H 1.09004 * 110.48389 * 2.92856 * 22 20 19 40 40 H 1.09002 * 110.90601 * 139.07765 * 23 22 20 41 41 H 1.08995 * 110.91495 * 262.68685 * 23 22 20 42 42 H 1.08996 * 110.61776 * 81.47641 * 24 23 22 43 43 H 1.08998 * 110.61599 * 204.47521 * 24 23 22 44 44 H 1.09002 * 109.47006 * 90.00244 * 28 27 17 45 45 H 1.09001 * 109.47065 * 209.99991 * 28 27 17 46 46 H 1.09002 * 109.47487 * 329.99917 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5960 1.9849 -0.8347 5 6 3.5405 1.4447 -0.1408 6 1 4.1651 1.3332 0.7332 7 6 4.1158 1.5891 -1.3855 8 7 5.4206 1.4962 -1.5216 9 14 3.0420 1.9169 -2.8784 10 1 2.7757 3.3738 -2.9864 11 1 3.7405 1.4494 -4.1027 12 1 1.7564 1.1881 -2.7331 13 7 1.6668 2.0924 1.2587 14 6 0.4509 2.6589 1.3899 15 8 -0.3363 2.6301 0.4638 16 7 0.1076 3.2572 2.5478 17 6 -1.1511 3.8431 2.6838 18 6 -2.1259 3.8837 1.7349 19 6 -3.2227 4.5595 2.2769 20 6 -4.5258 4.8350 1.5718 21 1 -4.5232 4.3613 0.5901 22 6 -5.7001 4.2949 2.4110 23 6 -6.5832 5.5392 2.6727 24 6 -6.1366 6.4984 1.5400 25 8 -4.7145 6.2529 1.4299 26 7 -2.9225 4.9172 3.4992 27 7 -1.6244 4.4739 3.7826 28 6 -0.9047 4.6644 5.0443 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 5.8254 1.5981 -2.3971 35 1 2.2947 2.1151 1.9977 36 1 0.7358 3.2805 3.2866 37 1 -2.0631 3.4678 0.7402 38 1 -6.2559 3.5436 1.8502 39 1 -5.3376 3.8797 3.3514 40 1 -7.6407 5.2922 2.5789 41 1 -6.3707 5.9681 3.6519 42 1 -6.6425 6.2518 0.6065 43 1 -6.3260 7.5351 1.8181 44 1 -0.3499 5.6020 5.0081 45 1 -1.6177 4.6956 5.8681 46 1 -0.2110 3.8373 5.1953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278872956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:38 Heat of formation + Delta-G solvation = 10.026921 kcal Electronic energy + Delta-G solvation = -27743.219162 eV Core-core repulsion = 23863.145030 eV Total energy + Delta-G solvation = -3880.074132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.45343 -39.69636 -39.09281 -35.74861 -34.53879 -33.27283 -32.44037 -32.16098 -31.44641 -29.73742 -28.68262 -27.35133 -26.28026 -23.21083 -23.03801 -22.10835 -21.72703 -20.22342 -19.99238 -19.65944 -18.27776 -17.56845 -16.51014 -16.34842 -15.94518 -15.77937 -15.49791 -15.26560 -14.81637 -14.54927 -14.22567 -13.74302 -13.61523 -13.37871 -13.20643 -12.99633 -12.81137 -12.60103 -12.44380 -11.96919 -11.92489 -11.87649 -11.64720 -11.44067 -10.98207 -10.93900 -10.80443 -10.75673 -10.56931 -10.48199 -9.97318 -9.88106 -9.87140 -9.49680 -9.24592 -8.80009 -8.76311 -8.24384 -7.74430 -6.29285 -4.33790 1.91534 2.15713 2.80446 3.06162 3.26280 3.33001 3.40122 3.72215 4.00030 4.28588 4.30211 4.50181 4.54011 4.64386 4.76322 4.90186 5.00257 5.09002 5.11844 5.16096 5.23948 5.48182 5.51950 5.58491 5.66330 5.78288 5.86212 5.97490 6.02856 6.07187 6.12504 6.21879 6.25519 6.57206 6.73322 6.76776 6.85932 6.88956 6.96727 7.07078 7.24456 7.28743 7.38125 7.50589 7.85597 8.17237 8.54627 8.71644 9.00121 9.32414 10.82029 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.003060 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.031986 B = 9146.885772 C = 9777.580904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.253 3.747 4 H 0.054 0.946 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.083 3.917 8 N -0.886 5.886 9 Si 0.873 3.127 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.257 1.257 13 N -0.709 5.709 14 C 0.700 3.300 15 O -0.564 6.564 16 N -0.669 5.669 17 C 0.337 3.663 18 C -0.272 4.272 19 C 0.083 3.917 20 C 0.162 3.838 21 H 0.091 0.909 22 C -0.145 4.145 23 C -0.152 4.152 24 C 0.045 3.955 25 O -0.365 6.365 26 N -0.280 5.280 27 N -0.395 5.395 28 C 0.102 3.898 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.269 0.731 35 H 0.390 0.610 36 H 0.402 0.598 37 H 0.177 0.823 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.437 5.250 11.714 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.151 3.849 4 H 0.071 0.929 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.522 5.522 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.182 1.182 13 N -0.362 5.362 14 C 0.399 3.601 15 O -0.440 6.440 16 N -0.320 5.320 17 C 0.117 3.883 18 C -0.304 4.304 19 C -0.083 4.083 20 C 0.102 3.898 21 H 0.109 0.891 22 C -0.183 4.183 23 C -0.190 4.190 24 C -0.032 4.032 25 O -0.283 6.283 26 N -0.104 5.104 27 N -0.183 5.183 28 C -0.040 4.040 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.224 0.776 36 H 0.236 0.764 37 H 0.194 0.806 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.109 0.891 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.029 5.910 11.777 23.146 hybrid contribution 0.636 -0.313 -0.524 0.882 sum -18.393 5.597 11.253 22.277 Atomic orbital electron populations 1.21897 0.97260 0.98845 1.02154 1.22092 0.93804 0.99337 1.01280 1.19146 0.95379 0.88864 0.81490 0.92864 1.20983 0.88561 1.51951 0.95502 0.90335 1.24934 0.94902 0.93503 0.98877 1.69872 1.09804 1.47889 1.24653 0.86903 0.81288 0.79785 0.82095 1.19757 1.21169 1.18153 1.45993 1.12550 1.58408 1.19206 1.15933 0.83923 0.78762 0.81438 1.90826 1.50741 1.63827 1.38631 1.42223 1.13529 1.59057 1.17192 1.17670 0.86689 0.95113 0.88874 1.21491 0.92041 1.13920 1.02932 1.21834 0.96162 0.98062 0.92253 1.20951 0.89064 0.82681 0.97111 0.89118 1.22979 0.95667 0.98315 1.01345 1.23108 0.99877 0.95852 1.00129 1.23622 0.81949 1.00162 0.97469 1.89065 1.23348 1.22153 1.93707 1.77320 0.92791 1.23200 1.17101 1.48412 1.12390 1.46552 1.10995 1.21760 0.96452 1.02453 0.83295 0.92939 0.95156 0.93182 0.91929 0.93052 0.92121 0.77627 0.76356 0.80571 0.90244 0.89934 0.90298 0.90389 0.91975 0.89076 0.90880 0.89092 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.53 37.16 0.32 -2.46 16 2 C -0.13 -2.61 5.59 -26.73 -0.15 -2.76 16 3 C 0.25 5.69 1.89 -69.08 -0.13 5.56 16 4 H 0.05 1.32 4.73 -51.93 -0.25 1.08 16 5 C -0.53 -13.68 9.05 -34.44 -0.31 -13.99 16 6 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 8 N -0.89 -25.46 13.96 55.43 0.77 -24.68 16 9 Si 0.87 21.05 26.99 -169.99 -4.59 16.46 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.26 -6.07 6.82 56.52 0.39 -5.68 16 13 N -0.71 -13.28 5.03 -59.81 -0.30 -13.58 16 14 C 0.70 12.87 7.13 -86.91 -0.62 12.25 16 15 O -0.56 -12.03 10.60 5.30 0.06 -11.97 16 16 N -0.67 -9.78 5.42 -15.84 -0.09 -9.87 16 17 C 0.34 5.33 7.66 -153.14 -1.17 4.16 16 18 C -0.27 -4.70 9.57 -39.78 -0.38 -5.08 16 19 C 0.08 1.30 5.96 -82.44 -0.49 0.81 16 20 C 0.16 2.10 3.92 -27.31 -0.11 1.99 16 21 H 0.09 1.10 8.13 -51.93 -0.42 0.68 16 22 C -0.14 -1.45 6.62 -25.20 -0.17 -1.62 16 23 C -0.15 -1.27 7.15 -24.72 -0.18 -1.45 16 24 C 0.04 0.42 7.72 38.22 0.30 0.71 16 25 O -0.36 -5.07 11.20 -35.23 -0.39 -5.46 16 26 N -0.28 -4.35 12.39 33.65 0.42 -3.93 16 27 N -0.39 -5.47 4.02 -67.17 -0.27 -5.74 16 28 C 0.10 0.89 11.28 59.85 0.68 1.56 16 29 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.97 5.63 -51.93 -0.29 0.68 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.39 6.28 8.61 -40.82 -0.35 5.93 16 36 H 0.40 4.34 7.98 -40.82 -0.33 4.02 16 37 H 0.18 3.35 5.82 -52.49 -0.31 3.05 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.92 7.57 -51.93 -0.39 0.52 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.51 7.50 -51.93 -0.39 0.12 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -33.12 369.82 -8.27 -41.40 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.94 Total: 9.98 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.52 Total: 1.84 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.53 Total: -57.80 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.34 Total: -17.43 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.59 Total: 16.46 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.12 -8.27 -41.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278872956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.423 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds