Wall clock time and date at job start Tue Mar 31 2020 12:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47017 * 2 1 4 4 H 1.08995 * 109.46924 * 304.99124 * 3 2 1 5 5 C 1.54811 * 109.46600 * 185.00157 * 3 2 1 6 6 N 1.45125 * 109.52588 * 172.10692 * 5 3 2 7 7 C 1.34771 * 118.75139 * 269.28678 * 6 5 3 8 8 O 1.21597 * 119.99749 * 185.22964 * 7 6 5 9 9 N 1.34773 * 120.00480 * 5.23485 * 7 6 5 10 10 C 1.40197 * 120.00253 * 174.87897 * 9 7 6 11 11 C 1.40404 * 125.97005 * 359.72015 * 10 9 7 12 12 C 1.35247 * 107.86725 * 179.97438 * 11 10 9 13 13 N 1.34959 * 107.85476 * 0.02562 * 12 11 10 14 14 C 1.46503 * 125.97170 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47193 * 125.00317 * 14 13 12 16 16 H 1.07998 * 120.00005 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99764 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99692 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00416 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47100 * 90.00387 * 19 17 15 21 21 H 1.48503 * 109.47332 * 210.00516 * 19 17 15 22 22 H 1.48502 * 109.46950 * 330.00521 * 19 17 15 23 23 N 1.31206 * 125.97295 * 179.41263 * 10 9 7 24 24 C 1.47502 * 122.48400 * 89.56906 * 6 5 3 25 25 C 1.53940 * 110.82386 * 317.97321 * 24 6 5 26 26 C 1.51532 * 109.72603 * 320.30584 * 25 24 6 27 27 O 1.38016 * 109.46793 * 64.99042 * 3 2 1 28 28 H 1.09001 * 109.47122 * 300.00062 * 1 2 3 29 29 H 1.09002 * 109.47195 * 59.99394 * 1 2 3 30 30 H 1.08998 * 109.47579 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47122 * 239.99938 * 2 1 3 32 32 H 1.08998 * 109.46949 * 119.99893 * 2 1 3 33 33 H 1.08996 * 109.46261 * 52.08501 * 5 3 2 34 34 H 1.09002 * 109.44921 * 292.11730 * 5 3 2 35 35 H 0.97000 * 120.00203 * 354.59726 * 9 7 6 36 36 H 1.07998 * 126.06676 * 359.96439 * 11 10 9 37 37 H 1.07994 * 126.06854 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.47007 * 245.00123 * 14 13 12 39 39 H 1.09003 * 109.47252 * 4.99843 * 14 13 12 40 40 H 0.96999 * 119.99895 * 179.97438 * 18 17 15 41 41 H 1.09007 * 109.16794 * 78.49519 * 24 6 5 42 42 H 1.09001 * 109.16668 * 197.68747 * 24 6 5 43 43 H 1.09000 * 109.46074 * 200.17696 * 25 24 6 44 44 H 1.08999 * 109.28092 * 80.32433 * 25 24 6 45 45 H 1.08995 * 109.59262 * 331.51088 * 26 25 24 46 46 H 1.09007 * 109.70843 * 211.15025 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5829 1.4443 -0.1273 6 7 4.0525 2.8046 -0.3149 7 6 4.1798 3.2791 -1.5698 8 8 4.6606 4.3801 -1.7576 9 7 3.7742 2.5336 -2.6167 10 6 3.8065 3.0680 -3.9124 11 6 4.2305 4.3603 -4.2611 12 6 4.1109 4.4885 -5.6021 13 7 3.6297 3.3250 -6.0878 14 6 3.3484 3.0306 -7.4951 15 6 4.0934 1.7870 -7.9069 16 1 4.7147 1.2681 -7.1919 17 6 3.9828 1.3124 -9.1966 18 7 4.6334 0.2273 -9.5561 19 14 2.9089 2.2103 -10.4334 20 1 3.7198 3.2317 -11.1436 21 1 2.3666 1.2379 -11.4161 22 1 1.7865 2.8751 -9.7238 23 7 3.4512 2.4461 -5.0117 24 6 4.4016 3.6851 0.8158 25 6 3.3735 3.5487 1.9534 26 6 1.9790 3.4348 1.3715 27 8 1.6746 2.0596 1.1792 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8773 0.8370 -0.9831 34 1 4.0223 1.0302 0.7802 35 1 3.4636 1.6257 -2.4742 36 1 4.5883 5.1176 -3.5793 37 1 4.3569 5.3662 -6.1814 38 1 2.2778 2.8730 -7.6264 39 1 3.6707 3.8687 -8.1131 40 1 4.5553 -0.1068 -10.4633 41 1 5.3902 3.4153 1.1876 42 1 4.4198 4.7192 0.4716 43 1 3.4272 4.4257 2.5985 44 1 3.5979 2.6553 2.5360 45 1 1.9386 3.9553 0.4147 46 1 1.2569 3.8763 2.0584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281342273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:29 Heat of formation + Delta-G solvation = 23.001803 kcal Electronic energy + Delta-G solvation = -27870.020087 eV Core-core repulsion = 23990.508589 eV Total energy + Delta-G solvation = -3879.511498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.20390 -40.29325 -38.94521 -35.69639 -35.16447 -34.42628 -33.25936 -32.01703 -31.05583 -29.38146 -28.53403 -27.28801 -26.52719 -24.04341 -22.85778 -22.12154 -21.45438 -20.88066 -20.16773 -19.28301 -18.13279 -17.22965 -17.03586 -16.82798 -16.47237 -16.09031 -15.43170 -15.18912 -14.79227 -14.52196 -14.25584 -13.97626 -13.88019 -13.61873 -13.39430 -13.07474 -12.94258 -12.83282 -12.51791 -12.31126 -12.18818 -12.12245 -11.71986 -11.59119 -11.26904 -11.16058 -11.12123 -10.81556 -10.74785 -10.63966 -10.10655 -10.00311 -9.91943 -9.75892 -9.51373 -8.84206 -8.76284 -8.17242 -7.47966 -6.23333 -4.25526 2.24886 2.57041 3.00218 3.15040 3.21314 3.22740 3.31109 3.35289 3.75549 4.00241 4.23084 4.33627 4.48535 4.57817 4.72858 4.78836 4.90685 4.91901 5.04444 5.12006 5.13849 5.24872 5.35812 5.38596 5.50421 5.54893 5.58073 5.66839 5.70582 5.74174 5.76715 5.90988 6.09452 6.10647 6.25418 6.36668 6.45700 6.57629 6.71715 6.82963 7.27355 7.32136 7.41426 7.77197 7.83723 8.34103 8.49345 8.58483 8.86723 9.31721 10.89407 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.002968 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.384870 B = 9432.009726 C =10389.606178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.085 3.915 4 H 0.054 0.946 5 C 0.070 3.930 6 N -0.625 5.625 7 C 0.711 3.289 8 O -0.565 6.565 9 N -0.643 5.643 10 C 0.277 3.723 11 C -0.282 4.282 12 C 0.051 3.949 13 N -0.320 5.320 14 C 0.232 3.768 15 C -0.534 4.534 16 H 0.086 0.914 17 C 0.076 3.924 18 N -0.888 5.888 19 Si 0.873 3.127 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.264 1.264 23 N -0.299 5.299 24 C 0.129 3.871 25 C -0.165 4.165 26 C 0.075 3.925 27 O -0.381 6.381 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.406 0.594 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 4.715 23.259 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.025 3.975 4 H 0.072 0.928 5 C -0.054 4.054 6 N -0.363 5.363 7 C 0.412 3.588 8 O -0.440 6.440 9 N -0.295 5.295 10 C 0.022 3.978 11 C -0.314 4.314 12 C -0.098 4.098 13 N -0.102 5.102 14 C 0.113 3.887 15 C -0.572 4.572 16 H 0.104 0.896 17 C -0.128 4.128 18 N -0.525 5.525 19 Si 0.699 3.301 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 N -0.130 5.130 24 C 0.006 3.994 25 C -0.204 4.204 26 C -0.002 4.002 27 O -0.300 6.300 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.243 0.757 36 H 0.179 0.821 37 H 0.186 0.814 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.690 4.199 22.494 23.579 hybrid contribution -0.029 0.647 -0.656 0.922 sum -5.719 4.847 21.838 23.089 Atomic orbital electron populations 1.21694 0.94872 1.01718 1.02353 1.21541 0.97193 0.93439 1.03114 1.22187 0.92871 0.94594 0.87879 0.92767 1.22572 0.95795 0.83258 1.03824 1.47046 1.70557 1.14190 1.04509 1.15672 0.79060 0.83919 0.80168 1.90855 1.49296 1.20345 1.83486 1.41621 1.67708 1.17260 1.02893 1.18817 1.01827 0.92891 0.84221 1.21511 1.16876 0.98370 0.94594 1.22541 1.00478 0.92031 0.94771 1.48591 1.46982 1.07602 1.07003 1.20039 0.97969 0.98843 0.71809 1.21114 1.29428 1.08782 0.97890 0.89645 1.24835 0.95280 0.94838 0.97817 1.69877 1.41569 1.21872 1.19216 0.86906 0.81305 0.80111 0.81775 1.19712 1.20547 1.18861 1.77383 1.27759 1.15893 0.91925 1.21783 0.97273 0.95400 0.84917 1.22558 0.95789 1.03790 0.98222 1.22170 0.95427 0.82005 1.00567 1.86246 1.80678 1.24596 1.38434 0.92037 0.92734 0.92564 0.90085 0.90832 0.89842 0.89012 0.75685 0.82104 0.81419 0.94068 0.93350 0.92194 0.91604 0.88742 0.89407 0.90263 0.92713 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.80 37.16 0.36 -0.85 16 2 C -0.11 -0.90 5.64 -26.73 -0.15 -1.05 16 3 C 0.08 0.77 2.64 -25.77 -0.07 0.71 16 4 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 5 C 0.07 0.62 4.56 -3.83 -0.02 0.61 16 6 N -0.63 -6.96 2.18 -177.97 -0.39 -7.34 16 7 C 0.71 10.81 8.17 -86.93 -0.71 10.10 16 8 O -0.56 -10.18 12.84 5.28 0.07 -10.11 16 9 N -0.64 -10.36 5.29 -15.51 -0.08 -10.44 16 10 C 0.28 5.60 8.11 -154.36 -1.25 4.35 16 11 C -0.28 -5.57 9.61 -39.83 -0.38 -5.95 16 12 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 13 N -0.32 -7.27 3.67 -62.56 -0.23 -7.50 16 14 C 0.23 5.51 5.33 -5.19 -0.03 5.48 16 15 C -0.53 -15.08 9.79 -34.44 -0.34 -15.42 16 16 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 19 Si 0.87 20.11 27.47 -169.99 -4.67 15.44 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 23 N -0.30 -6.87 12.42 31.44 0.39 -6.48 16 24 C 0.13 1.17 6.16 -3.00 -0.02 1.15 16 25 C -0.17 -1.12 5.79 -26.98 -0.16 -1.28 16 26 C 0.07 0.61 6.37 36.42 0.23 0.84 16 27 O -0.38 -3.58 8.99 -26.54 -0.24 -3.82 16 28 H 0.06 0.52 7.82 -51.93 -0.41 0.12 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.72 6.32 -51.93 -0.33 0.39 16 34 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 35 H 0.41 5.58 6.49 -40.82 -0.27 5.32 16 36 H 0.16 3.11 5.93 -52.49 -0.31 2.80 16 37 H 0.17 2.57 8.06 -52.49 -0.42 2.15 16 38 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 39 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.99 7.06 -51.93 -0.37 0.62 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.53 8.01 -51.93 -0.42 0.11 16 45 H 0.05 0.55 7.41 -51.93 -0.38 0.16 16 46 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -34.04 367.85 -8.71 -42.74 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.06 Total: 6.29 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -2.82 Total: 1.52 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.46 Total: -57.61 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.17 Total: -13.93 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.04 -8.71 -42.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281342273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.746 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds