Wall clock time and date at job start Tue Mar 31 2020 12:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47017 * 2 1 4 4 H 1.08995 * 109.46924 * 304.99124 * 3 2 1 5 5 C 1.54811 * 109.46600 * 185.00157 * 3 2 1 6 6 N 1.45125 * 109.52588 * 172.10692 * 5 3 2 7 7 C 1.34771 * 118.75139 * 269.28678 * 6 5 3 8 8 O 1.21597 * 119.99749 * 185.22964 * 7 6 5 9 9 N 1.34773 * 120.00480 * 5.23485 * 7 6 5 10 10 C 1.40197 * 120.00253 * 174.87897 * 9 7 6 11 11 C 1.40404 * 125.97005 * 359.72015 * 10 9 7 12 12 C 1.35247 * 107.86725 * 179.97438 * 11 10 9 13 13 N 1.34959 * 107.85476 * 0.02562 * 12 11 10 14 14 C 1.46503 * 125.97170 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47193 * 125.00317 * 14 13 12 16 16 H 1.07998 * 120.00005 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99764 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99692 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00416 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47100 * 90.00387 * 19 17 15 21 21 H 1.48503 * 109.47332 * 210.00516 * 19 17 15 22 22 H 1.48502 * 109.46950 * 330.00521 * 19 17 15 23 23 N 1.31206 * 125.97295 * 179.41263 * 10 9 7 24 24 C 1.47502 * 122.48400 * 89.56906 * 6 5 3 25 25 C 1.53940 * 110.82386 * 317.97321 * 24 6 5 26 26 C 1.51532 * 109.72603 * 320.30584 * 25 24 6 27 27 O 1.38016 * 109.46793 * 64.99042 * 3 2 1 28 28 H 1.09001 * 109.47122 * 300.00062 * 1 2 3 29 29 H 1.09002 * 109.47195 * 59.99394 * 1 2 3 30 30 H 1.08998 * 109.47579 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47122 * 239.99938 * 2 1 3 32 32 H 1.08998 * 109.46949 * 119.99893 * 2 1 3 33 33 H 1.08996 * 109.46261 * 52.08501 * 5 3 2 34 34 H 1.09002 * 109.44921 * 292.11730 * 5 3 2 35 35 H 0.97000 * 120.00203 * 354.59726 * 9 7 6 36 36 H 1.07998 * 126.06676 * 359.96439 * 11 10 9 37 37 H 1.07994 * 126.06854 * 180.02562 * 12 11 10 38 38 H 1.09004 * 109.47007 * 245.00123 * 14 13 12 39 39 H 1.09003 * 109.47252 * 4.99843 * 14 13 12 40 40 H 0.96999 * 119.99895 * 179.97438 * 18 17 15 41 41 H 1.09007 * 109.16794 * 78.49519 * 24 6 5 42 42 H 1.09001 * 109.16668 * 197.68747 * 24 6 5 43 43 H 1.09000 * 109.46074 * 200.17696 * 25 24 6 44 44 H 1.08999 * 109.28092 * 80.32433 * 25 24 6 45 45 H 1.08995 * 109.59262 * 331.51088 * 26 25 24 46 46 H 1.09007 * 109.70843 * 211.15025 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5829 1.4443 -0.1273 6 7 4.0525 2.8046 -0.3149 7 6 4.1798 3.2791 -1.5698 8 8 4.6606 4.3801 -1.7576 9 7 3.7742 2.5336 -2.6167 10 6 3.8065 3.0680 -3.9124 11 6 4.2305 4.3603 -4.2611 12 6 4.1109 4.4885 -5.6021 13 7 3.6297 3.3250 -6.0878 14 6 3.3484 3.0306 -7.4951 15 6 4.0934 1.7870 -7.9069 16 1 4.7147 1.2681 -7.1919 17 6 3.9828 1.3124 -9.1966 18 7 4.6334 0.2273 -9.5561 19 14 2.9089 2.2103 -10.4334 20 1 3.7198 3.2317 -11.1436 21 1 2.3666 1.2379 -11.4161 22 1 1.7865 2.8751 -9.7238 23 7 3.4512 2.4461 -5.0117 24 6 4.4016 3.6851 0.8158 25 6 3.3735 3.5487 1.9534 26 6 1.9790 3.4348 1.3715 27 8 1.6746 2.0596 1.1792 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8773 0.8370 -0.9831 34 1 4.0223 1.0302 0.7802 35 1 3.4636 1.6257 -2.4742 36 1 4.5883 5.1176 -3.5793 37 1 4.3569 5.3662 -6.1814 38 1 2.2778 2.8730 -7.6264 39 1 3.6707 3.8687 -8.1131 40 1 4.5553 -0.1068 -10.4633 41 1 5.3902 3.4153 1.1876 42 1 4.4198 4.7192 0.4716 43 1 3.4272 4.4257 2.5985 44 1 3.5979 2.6553 2.5360 45 1 1.9386 3.9553 0.4147 46 1 1.2569 3.8763 2.0584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281342273.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:26 Heat of formation + Delta-G solvation = 1.192502 kcal Electronic energy + Delta-G solvation = -27870.965809 eV Core-core repulsion = 23990.508589 eV Total energy + Delta-G solvation = -3880.457221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.44888 -41.58491 -39.95231 -36.70110 -36.33921 -35.52908 -34.99795 -33.22901 -32.41389 -30.97696 -29.40768 -28.93594 -27.43084 -25.10701 -24.35681 -23.26124 -22.25380 -22.11155 -21.54193 -20.52208 -19.26784 -19.10018 -18.22146 -17.85771 -17.59505 -17.20965 -16.68093 -16.39755 -16.18728 -15.80691 -15.50007 -15.03654 -14.87209 -14.71206 -14.56469 -14.39361 -14.17307 -13.92220 -13.85821 -13.63478 -13.47346 -13.02150 -12.81817 -12.55418 -12.46036 -12.33202 -12.19412 -11.93814 -11.83611 -11.82723 -11.66371 -11.49863 -11.46332 -11.10521 -10.86633 -10.63962 -9.87108 -9.68727 -9.05301 -8.37266 -6.47543 0.97686 1.09624 1.36922 1.39986 1.49634 1.61553 1.96565 2.29176 2.31482 2.64851 2.74548 2.95384 3.60563 3.79883 3.85647 3.88901 4.02522 4.09757 4.17091 4.22392 4.29092 4.43316 4.47045 4.56266 4.60075 4.68989 4.71253 4.78710 4.84108 4.88310 4.91118 4.94192 5.03703 5.07821 5.13043 5.15580 5.24125 5.26624 5.43350 5.49984 5.63154 5.88269 6.00848 6.40261 6.49756 6.59083 6.61539 7.03718 7.15478 7.27690 8.79882 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.002968 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.384870 B = 9432.009726 C =10389.606178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.090 3.910 4 H 0.030 0.970 5 C 0.067 3.933 6 N -0.614 5.614 7 C 0.707 3.293 8 O -0.595 6.595 9 N -0.640 5.640 10 C 0.282 3.718 11 C -0.293 4.293 12 C 0.062 3.938 13 N -0.344 5.344 14 C 0.240 3.760 15 C -0.547 4.547 16 H 0.026 0.974 17 C 0.015 3.985 18 N -0.942 5.942 19 Si 0.956 3.044 20 H -0.253 1.253 21 H -0.281 1.281 22 H -0.239 1.239 23 N -0.348 5.348 24 C 0.122 3.878 25 C -0.152 4.152 26 C 0.070 3.930 27 O -0.386 6.386 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.415 0.585 36 H 0.166 0.834 37 H 0.212 0.788 38 H 0.046 0.954 39 H 0.082 0.918 40 H 0.272 0.728 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.031 0.969 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 6.189 24.228 25.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.030 3.970 4 H 0.048 0.952 5 C -0.056 4.056 6 N -0.350 5.350 7 C 0.408 3.592 8 O -0.473 6.473 9 N -0.292 5.292 10 C 0.026 3.974 11 C -0.325 4.325 12 C -0.086 4.086 13 N -0.126 5.126 14 C 0.120 3.880 15 C -0.585 4.585 16 H 0.044 0.956 17 C -0.184 4.184 18 N -0.581 5.581 19 Si 0.776 3.224 20 H -0.177 1.177 21 H -0.206 1.206 22 H -0.162 1.162 23 N -0.178 5.178 24 C 0.001 3.999 25 C -0.190 4.190 26 C -0.006 4.006 27 O -0.305 6.305 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.254 0.746 36 H 0.184 0.816 37 H 0.228 0.772 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.107 0.893 45 H 0.050 0.950 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.614 5.665 23.545 25.104 hybrid contribution 0.322 0.147 -0.766 0.844 sum -6.292 5.812 22.780 24.337 Atomic orbital electron populations 1.21679 0.95198 1.02127 1.01529 1.21563 0.96882 0.92633 1.04042 1.22110 0.92684 0.95092 0.87122 0.95196 1.22757 0.95847 0.82033 1.04998 1.47171 1.69272 1.15170 1.03402 1.15875 0.78818 0.83491 0.81017 1.90818 1.50730 1.21605 1.84141 1.41667 1.67803 1.17856 1.01923 1.19152 1.00152 0.93090 0.85026 1.21697 1.17354 0.98332 0.95080 1.23234 0.98236 0.92082 0.95003 1.48500 1.48768 1.08688 1.06623 1.19894 0.97429 0.97657 0.73029 1.21234 1.29435 1.10581 0.97266 0.95563 1.25922 0.96732 0.95593 1.00180 1.70054 1.43744 1.24170 1.20152 0.85613 0.79632 0.78874 0.78237 1.17743 1.20634 1.16232 1.77302 1.30151 1.17459 0.92915 1.22015 0.98920 0.94211 0.84730 1.22494 0.93788 1.05414 0.97296 1.22316 0.97025 0.81306 0.99961 1.86246 1.80930 1.25134 1.38190 0.92385 0.94002 0.91545 0.89598 0.89424 0.89698 0.86669 0.74645 0.81631 0.77171 0.93640 0.90017 0.91884 0.90220 0.90284 0.86956 0.89257 0.95028 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.80 71.98 0.71 -1.62 16 2 C -0.11 -1.65 5.64 30.60 0.17 -1.47 16 3 C 0.09 1.58 2.64 31.21 0.08 1.66 16 4 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 5 C 0.07 1.12 4.56 87.26 0.40 1.52 16 6 N -0.61 -13.22 2.18 -835.23 -1.82 -15.04 16 7 C 0.71 21.63 8.17 179.06 1.46 23.09 16 8 O -0.60 -21.64 12.84 -4.02 -0.05 -21.69 16 9 N -0.64 -21.07 5.29 -321.23 -1.70 -22.76 16 10 C 0.28 11.61 8.11 133.31 1.08 12.69 16 11 C -0.29 -11.53 9.61 22.11 0.21 -11.32 16 12 C 0.06 2.35 11.44 83.52 0.96 3.30 16 13 N -0.34 -15.60 3.67 -351.83 -1.29 -16.89 16 14 C 0.24 11.15 5.33 85.63 0.46 11.61 16 15 C -0.55 -31.74 9.79 25.60 0.25 -31.49 16 16 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 17 C 0.01 0.82 5.47 84.65 0.46 1.28 16 18 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 19 Si 0.96 40.73 27.47 68.60 1.88 42.61 16 20 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 23 N -0.35 -16.43 12.42 -54.43 -0.68 -17.11 16 24 C 0.12 2.06 6.16 86.51 0.53 2.59 16 25 C -0.15 -1.69 5.79 30.43 0.18 -1.51 16 26 C 0.07 1.04 6.37 71.50 0.46 1.50 16 27 O -0.39 -6.71 8.99 -117.88 -1.06 -7.77 16 28 H 0.06 0.94 7.82 -2.39 -0.02 0.92 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.41 6.32 -2.39 -0.02 1.39 16 34 H 0.12 1.44 8.11 -2.39 -0.02 1.42 16 35 H 0.41 11.76 6.49 -92.71 -0.60 11.16 16 36 H 0.17 6.37 5.93 -2.91 -0.02 6.35 16 37 H 0.21 5.78 8.06 -2.91 -0.02 5.76 16 38 H 0.05 2.07 7.20 -2.39 -0.02 2.05 16 39 H 0.08 3.26 7.50 -2.39 -0.02 3.24 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.08 1.61 7.06 -2.39 -0.02 1.59 16 43 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.09 0.89 8.01 -2.39 -0.02 0.87 16 45 H 0.03 0.62 7.41 -2.39 -0.02 0.60 16 46 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -77.80 367.85 3.32 -74.48 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.33 Total: 30.23 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 7.41 Total: 11.84 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -5.19 Total: -129.70 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -1.11 Total: -29.46 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.88 Total: 42.61 kcal Total: -77.80 3.32 -74.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281342273.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.675 kcal (2) G-P(sol) polarization free energy of solvation -77.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds