Wall clock time and date at job start Tue Mar 31 2020 12:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46757 * 2 1 4 4 H 1.09001 * 109.47125 * 55.00990 * 3 2 1 5 5 C 1.54806 * 109.46833 * 174.99829 * 3 2 1 6 6 N 1.45120 * 109.53052 * 187.89746 * 5 3 2 7 7 C 1.34769 * 118.75946 * 90.70956 * 6 5 3 8 8 O 1.21588 * 120.00445 * 184.84184 * 7 6 5 9 9 N 1.34777 * 120.00354 * 4.83692 * 7 6 5 10 10 C 1.40194 * 120.00596 * 174.73697 * 9 7 6 11 11 C 1.40398 * 125.96966 * 0.02562 * 10 9 7 12 12 C 1.35240 * 107.86829 * 179.97438 * 11 10 9 13 13 N 1.34970 * 107.85818 * 359.97438 * 12 11 10 14 14 C 1.46503 * 125.97752 * 180.02562 * 13 12 11 15 15 C 1.50692 * 109.47094 * 124.98111 * 14 13 12 16 16 H 1.08000 * 119.99936 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00204 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99785 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00463 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46915 * 59.99951 * 19 17 15 21 21 H 1.48499 * 109.47232 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47076 * 300.00255 * 19 17 15 23 23 N 1.31203 * 125.97359 * 179.97438 * 10 9 7 24 24 C 1.47512 * 122.48386 * 270.98311 * 6 5 3 25 25 C 1.53199 * 111.23866 * 41.23075 * 24 6 5 26 26 C 1.51539 * 109.42737 * 40.26711 * 25 24 6 27 27 O 1.38011 * 109.47502 * 295.00930 * 3 2 1 28 28 H 1.08998 * 109.46824 * 60.00439 * 1 2 3 29 29 H 1.09003 * 109.46781 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47398 * 299.99839 * 1 2 3 31 31 H 1.08999 * 109.47096 * 239.99924 * 2 1 3 32 32 H 1.09002 * 109.47271 * 119.99736 * 2 1 3 33 33 H 1.08999 * 109.46426 * 67.87627 * 5 3 2 34 34 H 1.08998 * 109.45266 * 307.90729 * 5 3 2 35 35 H 0.97009 * 119.99370 * 354.74031 * 9 7 6 36 36 H 1.08004 * 126.06774 * 359.70479 * 11 10 9 37 37 H 1.08005 * 126.07287 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.46970 * 244.98497 * 14 13 12 39 39 H 1.09001 * 109.46992 * 4.98266 * 14 13 12 40 40 H 0.97001 * 120.00217 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.16518 * 161.75531 * 24 6 5 42 42 H 1.09000 * 109.16768 * 280.95184 * 24 6 5 43 43 H 1.08994 * 109.61095 * 280.22823 * 25 24 6 44 44 H 1.08994 * 109.44609 * 160.19870 * 25 24 6 45 45 H 1.08999 * 109.58892 * 148.72139 * 26 25 24 46 46 H 1.09003 * 109.59320 * 28.28597 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5827 1.4444 0.1273 6 7 4.0524 2.8046 0.3150 7 6 4.1797 3.2793 1.5699 8 8 4.4862 4.4417 1.7521 9 7 3.9671 2.4655 2.6230 10 6 4.2061 2.9270 3.9251 11 6 4.6651 4.2068 4.2751 12 6 4.7660 4.2573 5.6228 13 7 4.3860 3.0579 6.1115 14 6 4.3437 2.6791 7.5261 15 6 2.9633 2.1837 7.8723 16 1 2.1945 2.1536 7.1144 17 6 2.6820 1.7680 9.1565 18 7 3.6183 1.8042 10.0793 19 14 0.9711 1.1532 9.5856 20 1 0.6446 -0.0278 8.7465 21 1 0.9285 0.7682 11.0192 22 1 -0.0198 2.2297 9.3319 23 7 4.0392 2.2387 5.0295 24 6 4.3902 3.6893 -0.8160 25 6 3.3734 3.5488 -1.9534 26 6 1.9789 3.4349 -1.3715 27 8 1.6746 2.0597 -1.1792 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.0225 1.0303 -0.7801 34 1 3.8771 0.8372 0.9833 35 1 3.6487 1.5604 2.4800 36 1 4.9004 5.0075 3.5895 37 1 5.0927 5.1065 6.2047 38 1 5.0708 1.8888 7.7125 39 1 4.5836 3.5461 8.1416 40 1 3.4204 1.5121 10.9828 41 1 4.4005 4.7231 -0.4710 42 1 5.3797 3.4284 -1.1913 43 1 3.5977 2.6556 -2.5363 44 1 3.4270 4.4258 -2.5984 45 1 1.2583 3.8757 -2.0604 46 1 1.9384 3.9553 -0.4146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281342277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:32 Heat of formation + Delta-G solvation = 17.846350 kcal Electronic energy + Delta-G solvation = -27836.857506 eV Core-core repulsion = 23957.122450 eV Total energy + Delta-G solvation = -3879.735056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.17855 -40.22856 -38.92244 -35.68812 -35.15589 -34.40536 -33.32383 -32.01618 -30.75180 -29.28556 -28.52235 -26.98715 -26.35502 -24.05535 -23.08215 -22.19430 -21.45169 -20.82397 -20.20622 -19.21488 -18.11398 -17.18782 -16.89855 -16.56828 -16.49044 -16.00264 -15.34732 -15.14319 -14.88734 -14.45149 -14.28159 -13.98642 -13.83126 -13.63528 -13.44561 -12.92956 -12.85578 -12.78525 -12.32881 -12.26386 -12.10488 -11.80252 -11.70659 -11.55548 -11.26607 -11.14157 -11.05471 -10.86420 -10.77505 -10.44265 -10.25196 -10.06827 -9.90482 -9.67022 -9.50026 -8.83106 -8.62327 -8.10366 -7.41588 -6.23803 -4.28938 2.28413 2.62793 3.06588 3.25685 3.28924 3.31257 3.33763 3.39606 3.80556 4.06997 4.32565 4.35363 4.51600 4.57532 4.73276 4.78558 4.91081 4.92189 5.11150 5.12222 5.15678 5.25073 5.37750 5.44481 5.54207 5.55131 5.58993 5.68711 5.75452 5.75972 5.81520 5.91211 6.10068 6.14845 6.32001 6.53785 6.57408 6.82500 6.95608 7.08420 7.33081 7.47739 7.69023 7.78054 7.93209 8.06884 8.51805 8.65846 8.80881 9.36601 10.84867 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.003171 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.158760 B = 8826.778448 C =10310.557943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.085 3.915 4 H 0.054 0.946 5 C 0.071 3.929 6 N -0.626 5.626 7 C 0.711 3.289 8 O -0.565 6.565 9 N -0.643 5.643 10 C 0.274 3.726 11 C -0.286 4.286 12 C 0.051 3.949 13 N -0.320 5.320 14 C 0.259 3.741 15 C -0.529 4.529 16 H 0.068 0.932 17 C 0.062 3.938 18 N -0.896 5.896 19 Si 0.908 3.092 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 N -0.307 5.307 24 C 0.127 3.873 25 C -0.165 4.165 26 C 0.074 3.926 27 O -0.381 6.381 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.405 0.595 36 H 0.160 0.840 37 H 0.168 0.832 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.268 0.732 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 0.198 -24.045 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.025 3.975 4 H 0.072 0.928 5 C -0.054 4.054 6 N -0.363 5.363 7 C 0.412 3.588 8 O -0.440 6.440 9 N -0.295 5.295 10 C 0.020 3.980 11 C -0.317 4.317 12 C -0.099 4.099 13 N -0.102 5.102 14 C 0.142 3.858 15 C -0.567 4.567 16 H 0.086 0.914 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.200 1.200 23 N -0.138 5.138 24 C 0.005 3.995 25 C -0.203 4.203 26 C -0.002 4.002 27 O -0.300 6.300 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.242 0.758 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.967 -0.238 -23.234 23.255 hybrid contribution -0.570 0.050 0.220 0.613 sum -1.537 -0.189 -23.014 23.066 Atomic orbital electron populations 1.21696 0.94867 1.01707 1.02399 1.21534 0.97202 0.93440 1.03046 1.22181 0.92869 0.94582 0.87890 0.92837 1.22555 0.95756 0.83358 1.03716 1.47040 1.70749 1.14027 1.04520 1.15663 0.78540 0.84476 0.80163 1.90852 1.54002 1.15449 1.83680 1.41614 1.69236 1.16467 1.02175 1.18805 1.01732 0.93515 0.83984 1.21485 1.17226 0.98663 0.94371 1.22550 1.01453 0.91226 0.94624 1.49060 1.46337 1.07650 1.07137 1.19727 0.99313 0.97740 0.69052 1.21222 0.95689 1.43998 0.95816 0.91366 1.24940 0.98039 0.95237 0.95828 1.69908 1.33172 1.47119 1.03201 0.86391 0.83461 0.79428 0.77243 1.19932 1.21038 1.20038 1.77315 1.26422 1.18310 0.91762 1.21633 0.97352 0.95570 0.84957 1.22432 0.95920 1.03780 0.98217 1.22193 0.95455 0.81971 1.00628 1.86238 1.80703 1.24636 1.38407 0.92009 0.92579 0.92716 0.90846 0.90140 0.89080 0.89873 0.75769 0.82293 0.81518 0.93764 0.92550 0.92273 0.88555 0.91732 0.90272 0.89390 0.89145 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.80 37.16 0.36 -0.88 16 2 C -0.11 -0.90 5.64 -26.73 -0.15 -1.05 16 3 C 0.09 0.79 2.64 -25.78 -0.07 0.72 16 4 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 5 C 0.07 0.63 4.71 -3.83 -0.02 0.61 16 6 N -0.63 -6.99 2.20 -178.43 -0.39 -7.39 16 7 C 0.71 10.89 8.19 -86.92 -0.71 10.18 16 8 O -0.56 -10.28 12.79 5.29 0.07 -10.21 16 9 N -0.64 -10.42 5.29 -15.51 -0.08 -10.51 16 10 C 0.27 5.60 8.11 -154.37 -1.25 4.35 16 11 C -0.29 -5.79 9.61 -39.84 -0.38 -6.17 16 12 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 13 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 14 C 0.26 6.61 6.26 -5.20 -0.03 6.58 16 15 C -0.53 -14.75 9.24 -34.44 -0.32 -15.07 16 16 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.90 -25.37 13.29 55.43 0.74 -24.64 16 19 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 N -0.31 -7.12 12.42 31.44 0.39 -6.73 16 24 C 0.13 1.17 6.14 -3.39 -0.02 1.15 16 25 C -0.17 -1.15 5.78 -27.37 -0.16 -1.31 16 26 C 0.07 0.63 6.37 36.42 0.23 0.86 16 27 O -0.38 -3.67 8.99 -26.52 -0.24 -3.91 16 28 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.08 0.70 6.06 -51.93 -0.31 0.39 16 35 H 0.41 5.55 6.40 -40.82 -0.26 5.29 16 36 H 0.16 3.16 5.93 -52.48 -0.31 2.85 16 37 H 0.17 2.75 8.06 -52.48 -0.42 2.33 16 38 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.10 1.03 6.95 -51.93 -0.36 0.66 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.53 8.01 -51.93 -0.42 0.12 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.59 7.39 -51.93 -0.38 0.20 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -32.64 371.09 -9.05 -41.69 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.07 Total: 5.04 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.81 Total: 2.43 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.42 Total: -56.98 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.17 Total: -14.12 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.64 -9.05 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281342277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.539 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds