Wall clock time and date at job start Tue Mar 31 2020 12:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46757 * 2 1 4 4 H 1.09001 * 109.47125 * 55.00990 * 3 2 1 5 5 C 1.54806 * 109.46833 * 174.99829 * 3 2 1 6 6 N 1.45120 * 109.53052 * 187.89746 * 5 3 2 7 7 C 1.34769 * 118.75946 * 90.70956 * 6 5 3 8 8 O 1.21588 * 120.00445 * 184.84184 * 7 6 5 9 9 N 1.34777 * 120.00354 * 4.83692 * 7 6 5 10 10 C 1.40194 * 120.00596 * 174.73697 * 9 7 6 11 11 C 1.40398 * 125.96966 * 0.02562 * 10 9 7 12 12 C 1.35240 * 107.86829 * 179.97438 * 11 10 9 13 13 N 1.34970 * 107.85818 * 359.97438 * 12 11 10 14 14 C 1.46503 * 125.97752 * 180.02562 * 13 12 11 15 15 C 1.50692 * 109.47094 * 124.98111 * 14 13 12 16 16 H 1.08000 * 119.99936 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00204 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99785 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00463 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46915 * 59.99951 * 19 17 15 21 21 H 1.48499 * 109.47232 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47076 * 300.00255 * 19 17 15 23 23 N 1.31203 * 125.97359 * 179.97438 * 10 9 7 24 24 C 1.47512 * 122.48386 * 270.98311 * 6 5 3 25 25 C 1.53199 * 111.23866 * 41.23075 * 24 6 5 26 26 C 1.51539 * 109.42737 * 40.26711 * 25 24 6 27 27 O 1.38011 * 109.47502 * 295.00930 * 3 2 1 28 28 H 1.08998 * 109.46824 * 60.00439 * 1 2 3 29 29 H 1.09003 * 109.46781 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47398 * 299.99839 * 1 2 3 31 31 H 1.08999 * 109.47096 * 239.99924 * 2 1 3 32 32 H 1.09002 * 109.47271 * 119.99736 * 2 1 3 33 33 H 1.08999 * 109.46426 * 67.87627 * 5 3 2 34 34 H 1.08998 * 109.45266 * 307.90729 * 5 3 2 35 35 H 0.97009 * 119.99370 * 354.74031 * 9 7 6 36 36 H 1.08004 * 126.06774 * 359.70479 * 11 10 9 37 37 H 1.08005 * 126.07287 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.46970 * 244.98497 * 14 13 12 39 39 H 1.09001 * 109.46992 * 4.98266 * 14 13 12 40 40 H 0.97001 * 120.00217 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.16518 * 161.75531 * 24 6 5 42 42 H 1.09000 * 109.16768 * 280.95184 * 24 6 5 43 43 H 1.08994 * 109.61095 * 280.22823 * 25 24 6 44 44 H 1.08994 * 109.44609 * 160.19870 * 25 24 6 45 45 H 1.08999 * 109.58892 * 148.72139 * 26 25 24 46 46 H 1.09003 * 109.59320 * 28.28597 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5827 1.4444 0.1273 6 7 4.0524 2.8046 0.3150 7 6 4.1797 3.2793 1.5699 8 8 4.4862 4.4417 1.7521 9 7 3.9671 2.4655 2.6230 10 6 4.2061 2.9270 3.9251 11 6 4.6651 4.2068 4.2751 12 6 4.7660 4.2573 5.6228 13 7 4.3860 3.0579 6.1115 14 6 4.3437 2.6791 7.5261 15 6 2.9633 2.1837 7.8723 16 1 2.1945 2.1536 7.1144 17 6 2.6820 1.7680 9.1565 18 7 3.6183 1.8042 10.0793 19 14 0.9711 1.1532 9.5856 20 1 0.6446 -0.0278 8.7465 21 1 0.9285 0.7682 11.0192 22 1 -0.0198 2.2297 9.3319 23 7 4.0392 2.2387 5.0295 24 6 4.3902 3.6893 -0.8160 25 6 3.3734 3.5488 -1.9534 26 6 1.9789 3.4349 -1.3715 27 8 1.6746 2.0597 -1.1792 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.0225 1.0303 -0.7801 34 1 3.8771 0.8372 0.9833 35 1 3.6487 1.5604 2.4800 36 1 4.9004 5.0075 3.5895 37 1 5.0927 5.1065 6.2047 38 1 5.0708 1.8888 7.7125 39 1 4.5836 3.5461 8.1416 40 1 3.4204 1.5121 10.9828 41 1 4.4005 4.7231 -0.4710 42 1 5.3797 3.4284 -1.1913 43 1 3.5977 2.6556 -2.5363 44 1 3.4270 4.4258 -2.5984 45 1 1.2583 3.8757 -2.0604 46 1 1.9384 3.9553 -0.4146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281342277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:31 Heat of formation + Delta-G solvation = -1.313956 kcal Electronic energy + Delta-G solvation = -27837.688359 eV Core-core repulsion = 23957.122450 eV Total energy + Delta-G solvation = -3880.565909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.43138 -41.57241 -39.95121 -36.69245 -36.34073 -35.57946 -35.03841 -33.05582 -32.27990 -30.94407 -29.35643 -28.59654 -27.41637 -25.27238 -24.55787 -23.27253 -22.25694 -22.13253 -21.55520 -20.47691 -19.26768 -18.68875 -18.22358 -17.85749 -17.59028 -17.18493 -16.66066 -16.34163 -16.18150 -15.98103 -15.56635 -15.08542 -14.69807 -14.57332 -14.54969 -14.22856 -14.14771 -13.90405 -13.72591 -13.63678 -13.41117 -12.95610 -12.86495 -12.71806 -12.44696 -12.29053 -12.23366 -12.08318 -11.93570 -11.83369 -11.65451 -11.51424 -11.40015 -11.07804 -10.72093 -10.63010 -9.85446 -9.67860 -9.06551 -8.32885 -6.47145 1.02590 1.08669 1.38164 1.40060 1.48831 1.63254 1.98590 2.32487 2.35020 2.64609 2.77039 2.98800 3.61762 3.82104 3.86299 3.91997 4.04318 4.09140 4.21163 4.24049 4.30387 4.43824 4.47279 4.57235 4.70253 4.71715 4.79121 4.87435 4.88777 4.92666 4.94499 5.00388 5.04263 5.10756 5.12669 5.16064 5.26511 5.43148 5.51092 5.55449 5.63864 5.82672 5.92897 6.27859 6.52411 6.61152 6.65736 7.06944 7.22763 7.29441 8.74504 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.003171 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.158760 B = 8826.778448 C =10310.557943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.089 3.911 4 H 0.026 0.974 5 C 0.068 3.932 6 N -0.614 5.614 7 C 0.707 3.293 8 O -0.596 6.596 9 N -0.638 5.638 10 C 0.282 3.718 11 C -0.293 4.293 12 C 0.058 3.942 13 N -0.344 5.344 14 C 0.273 3.727 15 C -0.549 4.549 16 H 0.052 0.948 17 C 0.020 3.980 18 N -0.920 5.920 19 Si 0.970 3.030 20 H -0.272 1.272 21 H -0.273 1.273 22 H -0.270 1.270 23 N -0.346 5.346 24 C 0.121 3.879 25 C -0.152 4.152 26 C 0.069 3.931 27 O -0.387 6.387 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.416 0.584 36 H 0.165 0.835 37 H 0.202 0.798 38 H 0.022 0.978 39 H 0.059 0.941 40 H 0.273 0.727 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 -0.271 -25.940 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.028 3.972 4 H 0.044 0.956 5 C -0.055 4.055 6 N -0.350 5.350 7 C 0.408 3.592 8 O -0.474 6.474 9 N -0.291 5.291 10 C 0.026 3.974 11 C -0.324 4.324 12 C -0.091 4.091 13 N -0.126 5.126 14 C 0.155 3.845 15 C -0.587 4.587 16 H 0.070 0.930 17 C -0.181 4.181 18 N -0.559 5.559 19 Si 0.794 3.206 20 H -0.198 1.198 21 H -0.197 1.197 22 H -0.195 1.195 23 N -0.177 5.177 24 C 0.000 4.000 25 C -0.190 4.190 26 C -0.007 4.007 27 O -0.305 6.305 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.255 0.745 36 H 0.183 0.817 37 H 0.219 0.781 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.126 0.874 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.389 -0.724 -25.191 25.240 hybrid contribution -0.424 0.241 0.660 0.821 sum -1.813 -0.482 -24.531 24.603 Atomic orbital electron populations 1.21686 0.95368 1.02131 1.01443 1.21558 0.96735 0.92538 1.04160 1.22132 0.92906 0.95126 0.86998 0.95563 1.22750 0.95568 0.82085 1.05134 1.47162 1.69386 1.15093 1.03353 1.15870 0.78318 0.83983 0.81050 1.90817 1.55478 1.16757 1.84349 1.41634 1.69276 1.17226 1.00991 1.19099 0.99896 0.93424 0.84940 1.21652 1.17431 0.98805 0.94504 1.23150 0.99838 0.91040 0.95036 1.48833 1.48357 1.08852 1.06518 1.19334 0.97664 0.96955 0.70584 1.21373 0.96420 1.44977 0.95931 0.92988 1.25726 1.01803 0.95043 0.95522 1.69986 1.34905 1.47414 1.03605 0.85423 0.78864 0.78848 0.77450 1.19752 1.19737 1.19548 1.77236 1.28510 1.19480 0.92446 1.21863 0.99102 0.94305 0.84743 1.22370 0.93832 1.05450 0.97356 1.22327 0.97168 0.81317 0.99874 1.86239 1.81009 1.25084 1.38202 0.92469 0.91465 0.94153 0.89291 0.89409 0.86556 0.89393 0.74489 0.81725 0.78138 0.96006 0.92337 0.91809 0.90295 0.90019 0.89091 0.87019 0.87407 0.95160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.80 71.98 0.71 -1.65 16 2 C -0.11 -1.58 5.64 30.59 0.17 -1.41 16 3 C 0.09 1.55 2.64 31.21 0.08 1.64 16 4 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 5 C 0.07 1.09 4.71 87.25 0.41 1.50 16 6 N -0.61 -12.98 2.20 -836.70 -1.84 -14.82 16 7 C 0.71 21.45 8.19 179.06 1.47 22.92 16 8 O -0.60 -21.75 12.79 -3.99 -0.05 -21.80 16 9 N -0.64 -20.68 5.29 -321.25 -1.70 -22.37 16 10 C 0.28 11.65 8.11 133.31 1.08 12.73 16 11 C -0.29 -11.85 9.61 22.10 0.21 -11.63 16 12 C 0.06 2.33 11.44 83.52 0.96 3.29 16 13 N -0.34 -16.37 3.67 -351.84 -1.29 -17.66 16 14 C 0.27 14.29 6.26 85.63 0.54 14.83 16 15 C -0.55 -31.18 9.24 25.60 0.24 -30.94 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 17 C 0.02 1.08 5.46 84.65 0.46 1.54 16 18 N -0.92 -52.32 13.29 21.45 0.28 -52.04 16 19 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 N -0.35 -16.35 12.42 -54.44 -0.68 -17.03 16 24 C 0.12 2.01 6.14 86.25 0.53 2.54 16 25 C -0.15 -1.71 5.78 30.18 0.17 -1.53 16 26 C 0.07 1.07 6.37 71.50 0.46 1.53 16 27 O -0.39 -6.81 8.99 -117.81 -1.06 -7.87 16 28 H 0.06 0.94 7.82 -2.39 -0.02 0.92 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.12 1.35 8.12 -2.39 -0.02 1.33 16 34 H 0.09 1.34 6.06 -2.39 -0.01 1.32 16 35 H 0.42 11.32 6.40 -92.70 -0.59 10.73 16 36 H 0.17 6.52 5.93 -2.91 -0.02 6.50 16 37 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 38 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 40 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.08 1.62 6.95 -2.39 -0.02 1.61 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 0.88 8.01 -2.39 -0.02 0.86 16 44 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.03 0.63 7.39 -2.39 -0.02 0.61 16 Total: -1.00 -71.07 371.09 3.57 -67.50 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.39 Total: 25.04 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 7.48 Total: 15.35 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -5.22 Total: -123.92 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.11 Total: -29.67 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -71.07 3.57 -67.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281342277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.185 kcal (2) G-P(sol) polarization free energy of solvation -71.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds