Wall clock time and date at job start Tue Mar 31 2020 12:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47347 * 2 1 4 4 H 1.09001 * 109.46914 * 55.00475 * 3 2 1 5 5 C 1.52994 * 109.47442 * 294.99949 * 3 2 1 6 6 C 1.53001 * 109.47471 * 174.99548 * 3 2 1 7 7 H 1.09005 * 109.46867 * 60.00078 * 6 3 2 8 8 N 1.46497 * 109.47511 * 300.00983 * 6 3 2 9 9 C 1.34782 * 119.99335 * 299.99299 * 8 6 3 10 10 C 1.50705 * 119.99824 * 179.97438 * 9 8 6 11 11 O 1.21275 * 120.00354 * 0.02562 * 9 8 6 12 12 C 1.50695 * 109.47394 * 179.97438 * 6 3 2 13 13 O 1.21297 * 119.99358 * 100.00561 * 12 6 3 14 14 N 1.34771 * 120.00677 * 280.00782 * 12 6 3 15 15 C 1.40154 * 120.00504 * 179.97438 * 14 12 6 16 16 C 1.40411 * 125.97106 * 0.02562 * 15 14 12 17 17 C 1.35241 * 107.86611 * 179.74212 * 16 15 14 18 18 N 1.34965 * 107.86302 * 0.38043 * 17 16 15 19 19 C 1.46495 * 125.97869 * 179.87777 * 18 17 16 20 20 C 1.50702 * 109.47571 * 124.71943 * 19 18 17 21 21 H 1.08002 * 119.99446 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00072 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99826 * 179.72119 * 22 20 19 24 24 Si 1.86800 * 120.00406 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72576 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72423 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72459 * 24 22 20 28 28 N 1.31221 * 125.97729 * 179.97438 * 15 14 12 29 29 H 1.08996 * 109.47265 * 299.99673 * 1 2 3 30 30 H 1.09003 * 109.46822 * 59.99690 * 1 2 3 31 31 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47346 * 239.99881 * 2 1 3 33 33 H 1.08997 * 109.47241 * 120.00423 * 2 1 3 34 34 H 1.08995 * 109.47287 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47495 * 300.00170 * 5 3 2 36 36 H 1.09007 * 109.46833 * 59.99635 * 5 3 2 37 37 H 0.96993 * 120.00558 * 119.99425 * 8 6 3 38 38 H 1.08999 * 109.46603 * 89.99838 * 10 9 8 39 39 H 1.08995 * 109.47070 * 209.99739 * 10 9 8 40 40 H 1.09005 * 109.46971 * 330.00338 * 10 9 8 41 41 H 0.97004 * 119.99445 * 359.97438 * 14 12 6 42 42 H 1.07998 * 126.06914 * 359.97438 * 16 15 14 43 43 H 1.08001 * 126.07068 * 180.26820 * 17 16 15 44 44 H 1.09000 * 109.47378 * 4.71603 * 19 18 17 45 45 H 1.09001 * 109.47153 * 244.71723 * 19 18 17 46 46 H 0.96999 * 120.00128 * 180.27192 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 1 3.9995 0.9052 -0.7160 8 7 3.9524 0.7892 1.3775 9 6 3.5279 1.2846 2.5569 10 6 3.9260 0.6105 3.8446 11 8 2.8247 2.2724 2.5818 12 6 4.0672 2.8650 0.1252 13 8 4.3557 3.4066 1.1715 14 7 4.1960 3.5339 -1.0377 15 6 4.6627 4.8554 -1.0382 16 6 5.0311 5.6004 0.0935 17 6 5.4300 6.8226 -0.3261 18 7 5.3121 6.8577 -1.6702 19 6 5.6354 7.9966 -2.5330 20 6 6.6245 7.5653 -3.5849 21 1 6.9774 6.5448 -3.6081 22 6 7.0797 8.4735 -4.5170 23 7 7.9471 8.0984 -5.4316 24 14 6.4698 10.2387 -4.4764 25 1 5.2561 10.3626 -5.3231 26 1 6.1391 10.6161 -3.0788 27 1 7.5294 11.1406 -4.9951 28 7 4.8328 5.6125 -2.0964 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.9983 3.1543 -1.3071 35 1 2.0699 1.5875 -2.1492 36 1 0.5490 2.1252 -1.3969 37 1 4.5145 -0.0010 1.3576 38 1 4.8592 1.0417 4.2069 39 1 3.1440 0.7587 4.5892 40 1 4.0629 -0.4566 3.6688 41 1 3.9656 3.1005 -1.8744 42 1 5.0045 5.2570 1.1171 43 1 5.7789 7.6283 0.3028 44 1 6.0693 8.7960 -1.9323 45 1 4.7265 8.3568 -3.0149 46 1 8.2703 8.7384 -6.0850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285558349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:16 Heat of formation + Delta-G solvation = 11.100765 kcal Electronic energy + Delta-G solvation = -27746.313459 eV Core-core repulsion = 23866.285893 eV Total energy + Delta-G solvation = -3880.027566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07804 -40.24314 -38.55498 -36.77265 -34.78866 -33.96536 -33.26774 -31.49523 -30.75734 -29.59512 -29.31659 -27.37135 -26.49159 -24.55415 -22.67925 -21.74070 -21.23339 -20.44669 -19.68744 -19.30984 -17.62848 -17.12821 -16.90839 -16.28759 -16.20678 -15.66738 -15.28140 -15.01370 -14.73644 -14.39310 -14.16038 -13.91286 -13.71990 -13.41466 -13.10901 -13.00377 -12.71100 -12.63064 -12.55316 -12.35548 -12.26048 -12.15451 -12.04791 -11.80979 -11.31386 -11.08302 -11.00426 -10.89459 -10.83387 -10.46703 -10.08752 -9.99581 -9.86034 -9.63469 -9.50424 -8.96405 -8.75951 -8.13967 -7.47791 -6.22951 -4.25034 2.33795 2.51557 2.81521 2.89457 3.12163 3.17288 3.22351 3.25499 3.70793 3.82128 4.23605 4.42073 4.53570 4.57747 4.77261 4.84429 4.88851 5.02522 5.05336 5.16946 5.24162 5.30393 5.34061 5.43864 5.49192 5.62678 5.69496 5.73149 5.77059 5.81274 5.87590 6.07091 6.15777 6.22751 6.27351 6.43153 6.48689 6.61321 6.68684 7.26588 7.34063 7.40795 7.61945 7.84778 8.19666 8.34630 8.36271 8.60418 8.86853 9.32275 10.89783 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021392 B = 0.002754 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.591550 B =10164.353715 C =10813.408393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.101 0.899 5 C -0.164 4.164 6 C 0.144 3.856 7 H 0.110 0.890 8 N -0.722 5.722 9 C 0.514 3.486 10 C -0.170 4.170 11 O -0.511 6.511 12 C 0.508 3.492 13 O -0.487 6.487 14 N -0.632 5.632 15 C 0.262 3.738 16 C -0.282 4.282 17 C 0.050 3.950 18 N -0.320 5.320 19 C 0.232 3.768 20 C -0.533 4.533 21 H 0.085 0.915 22 C 0.076 3.924 23 N -0.888 5.888 24 Si 0.874 3.126 25 H -0.272 1.272 26 H -0.265 1.265 27 H -0.281 1.281 28 N -0.299 5.299 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.404 0.596 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.409 0.591 42 H 0.160 0.840 43 H 0.168 0.832 44 H 0.053 0.947 45 H 0.037 0.963 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.097 -18.957 13.777 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.124 4.124 4 H 0.119 0.881 5 C -0.221 4.221 6 C 0.034 3.966 7 H 0.127 0.873 8 N -0.376 5.376 9 C 0.301 3.699 10 C -0.230 4.230 11 O -0.384 6.384 12 C 0.291 3.709 13 O -0.357 6.357 14 N -0.282 5.282 15 C 0.009 3.991 16 C -0.313 4.313 17 C -0.099 4.099 18 N -0.102 5.102 19 C 0.113 3.887 20 C -0.572 4.572 21 H 0.103 0.897 22 C -0.128 4.128 23 N -0.526 5.526 24 Si 0.700 3.300 25 H -0.197 1.197 26 H -0.190 1.190 27 H -0.206 1.206 28 N -0.129 5.129 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.238 0.762 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.246 0.754 42 H 0.178 0.822 43 H 0.185 0.815 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.355 -17.603 13.113 24.713 hybrid contribution 0.231 0.368 0.130 0.454 sum -11.124 -17.235 13.243 24.416 Atomic orbital electron populations 1.21802 0.95614 1.01427 1.02195 1.21490 0.96184 0.95340 1.01900 1.21532 0.92181 0.97858 1.00806 0.88105 1.22094 1.02647 1.01335 0.96065 1.20846 0.96669 0.90874 0.88192 0.87255 1.45709 1.54864 1.32079 1.04931 1.20652 0.79964 0.84125 0.85138 1.21857 1.04515 1.01131 0.95478 1.90736 1.36286 1.24391 1.87000 1.20816 0.78405 0.88478 0.83204 1.90683 1.46286 1.67959 1.30819 1.42671 1.64973 1.10488 1.10055 1.19127 1.00715 0.86129 0.93166 1.21543 1.15793 0.93931 1.00045 1.22540 1.02179 0.99473 0.85696 1.48592 1.46944 1.10006 1.04640 1.20041 0.97203 0.80935 0.90512 1.21113 1.24399 0.99854 1.11793 0.89658 1.24831 0.94569 0.98621 0.94747 1.69873 1.30471 1.35398 1.16840 0.86889 0.79206 0.84770 0.79089 1.19697 1.18953 1.20601 1.77382 1.23568 0.92218 1.19758 0.92724 0.92314 0.92871 0.91903 0.91913 0.91528 0.92140 0.91415 0.76152 0.88913 0.89118 0.90561 0.75449 0.82241 0.81503 0.92950 0.94499 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.67 37.16 0.36 -0.73 16 2 C -0.11 -0.79 5.32 -26.74 -0.14 -0.93 16 3 C -0.10 -0.99 1.75 -90.63 -0.16 -1.15 16 4 H 0.10 1.30 6.17 -51.93 -0.32 0.98 16 5 C -0.16 -1.51 7.97 37.15 0.30 -1.22 16 6 C 0.14 1.40 2.60 -69.09 -0.18 1.22 16 7 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 8 N -0.72 -6.06 4.35 -54.93 -0.24 -6.30 16 9 C 0.51 5.62 6.71 -10.98 -0.07 5.54 16 10 C -0.17 -1.15 10.30 36.01 0.37 -0.78 16 11 O -0.51 -8.11 12.99 -17.92 -0.23 -8.34 16 12 C 0.51 7.49 6.26 -10.99 -0.07 7.42 16 13 O -0.49 -8.96 10.82 -17.94 -0.19 -9.15 16 14 N -0.63 -9.89 4.14 -11.13 -0.05 -9.94 16 15 C 0.26 5.35 8.11 -154.39 -1.25 4.10 16 16 C -0.28 -5.74 9.61 -39.83 -0.38 -6.13 16 17 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 18 N -0.32 -7.41 3.67 -62.56 -0.23 -7.64 16 19 C 0.23 5.59 5.33 -5.20 -0.03 5.57 16 20 C -0.53 -15.18 9.79 -34.44 -0.34 -15.51 16 21 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 22 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 23 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 24 Si 0.87 20.33 27.47 -169.99 -4.67 15.66 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 N -0.30 -6.93 12.42 31.44 0.39 -6.54 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.43 7.45 -51.93 -0.39 0.04 16 34 H 0.07 0.78 5.94 -51.93 -0.31 0.47 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.59 6.57 -51.93 -0.34 0.25 16 37 H 0.40 1.92 8.83 -40.82 -0.36 1.56 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.41 5.27 7.68 -40.82 -0.31 4.96 16 42 H 0.16 3.25 5.92 -52.49 -0.31 2.94 16 43 H 0.17 2.70 8.06 -52.49 -0.42 2.27 16 44 H 0.05 1.17 7.12 -51.93 -0.37 0.80 16 45 H 0.04 0.87 7.57 -51.93 -0.39 0.48 16 46 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -37.37 370.25 -7.60 -44.97 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.84 Total: 7.39 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.89 Total: 0.26 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.65 Total: -56.37 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.43 Total: -17.50 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.37 -7.60 -44.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285558349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.074 kcal (2) G-P(sol) polarization free energy of solvation -37.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds