Wall clock time and date at job start Tue Mar 31 2020 12:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47347 * 2 1 4 4 H 1.09001 * 109.46914 * 55.00475 * 3 2 1 5 5 C 1.52994 * 109.47442 * 294.99949 * 3 2 1 6 6 C 1.53001 * 109.47471 * 174.99548 * 3 2 1 7 7 H 1.09005 * 109.46867 * 60.00078 * 6 3 2 8 8 N 1.46497 * 109.47511 * 300.00983 * 6 3 2 9 9 C 1.34782 * 119.99335 * 299.99299 * 8 6 3 10 10 C 1.50705 * 119.99824 * 179.97438 * 9 8 6 11 11 O 1.21275 * 120.00354 * 0.02562 * 9 8 6 12 12 C 1.50695 * 109.47394 * 179.97438 * 6 3 2 13 13 O 1.21297 * 119.99358 * 100.00561 * 12 6 3 14 14 N 1.34771 * 120.00677 * 280.00782 * 12 6 3 15 15 C 1.40154 * 120.00504 * 179.97438 * 14 12 6 16 16 C 1.40411 * 125.97106 * 0.02562 * 15 14 12 17 17 C 1.35241 * 107.86611 * 179.74212 * 16 15 14 18 18 N 1.34965 * 107.86302 * 0.38043 * 17 16 15 19 19 C 1.46495 * 125.97869 * 179.87777 * 18 17 16 20 20 C 1.50702 * 109.47571 * 124.71943 * 19 18 17 21 21 H 1.08002 * 119.99446 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00072 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99826 * 179.72119 * 22 20 19 24 24 Si 1.86800 * 120.00406 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72576 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72423 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72459 * 24 22 20 28 28 N 1.31221 * 125.97729 * 179.97438 * 15 14 12 29 29 H 1.08996 * 109.47265 * 299.99673 * 1 2 3 30 30 H 1.09003 * 109.46822 * 59.99690 * 1 2 3 31 31 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47346 * 239.99881 * 2 1 3 33 33 H 1.08997 * 109.47241 * 120.00423 * 2 1 3 34 34 H 1.08995 * 109.47287 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47495 * 300.00170 * 5 3 2 36 36 H 1.09007 * 109.46833 * 59.99635 * 5 3 2 37 37 H 0.96993 * 120.00558 * 119.99425 * 8 6 3 38 38 H 1.08999 * 109.46603 * 89.99838 * 10 9 8 39 39 H 1.08995 * 109.47070 * 209.99739 * 10 9 8 40 40 H 1.09005 * 109.46971 * 330.00338 * 10 9 8 41 41 H 0.97004 * 119.99445 * 359.97438 * 14 12 6 42 42 H 1.07998 * 126.06914 * 359.97438 * 16 15 14 43 43 H 1.08001 * 126.07068 * 180.26820 * 17 16 15 44 44 H 1.09000 * 109.47378 * 4.71603 * 19 18 17 45 45 H 1.09001 * 109.47153 * 244.71723 * 19 18 17 46 46 H 0.96999 * 120.00128 * 180.27192 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 1 3.9995 0.9052 -0.7160 8 7 3.9524 0.7892 1.3775 9 6 3.5279 1.2846 2.5569 10 6 3.9260 0.6105 3.8446 11 8 2.8247 2.2724 2.5818 12 6 4.0672 2.8650 0.1252 13 8 4.3557 3.4066 1.1715 14 7 4.1960 3.5339 -1.0377 15 6 4.6627 4.8554 -1.0382 16 6 5.0311 5.6004 0.0935 17 6 5.4300 6.8226 -0.3261 18 7 5.3121 6.8577 -1.6702 19 6 5.6354 7.9966 -2.5330 20 6 6.6245 7.5653 -3.5849 21 1 6.9774 6.5448 -3.6081 22 6 7.0797 8.4735 -4.5170 23 7 7.9471 8.0984 -5.4316 24 14 6.4698 10.2387 -4.4764 25 1 5.2561 10.3626 -5.3231 26 1 6.1391 10.6161 -3.0788 27 1 7.5294 11.1406 -4.9951 28 7 4.8328 5.6125 -2.0964 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.9983 3.1543 -1.3071 35 1 2.0699 1.5875 -2.1492 36 1 0.5490 2.1252 -1.3969 37 1 4.5145 -0.0010 1.3576 38 1 4.8592 1.0417 4.2069 39 1 3.1440 0.7587 4.5892 40 1 4.0629 -0.4566 3.6688 41 1 3.9656 3.1005 -1.8744 42 1 5.0045 5.2570 1.1171 43 1 5.7789 7.6283 0.3028 44 1 6.0693 8.7960 -1.9323 45 1 4.7265 8.3568 -3.0149 46 1 8.2703 8.7384 -6.0850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285558349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:15 Heat of formation + Delta-G solvation = -15.351836 kcal Electronic energy + Delta-G solvation = -27747.460530 eV Core-core repulsion = 23866.285893 eV Total energy + Delta-G solvation = -3881.174637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.37856 -41.52112 -39.67819 -37.61694 -36.24435 -35.21031 -34.78267 -33.19336 -31.65583 -30.98804 -30.21598 -29.07997 -27.45205 -25.48144 -24.36099 -22.99382 -22.17776 -21.82641 -21.00320 -20.37125 -19.12215 -18.48191 -18.34579 -17.60851 -17.21178 -16.75389 -16.64978 -16.24946 -15.97248 -15.58368 -15.43783 -14.93253 -14.83635 -14.65511 -14.47144 -14.37839 -13.91069 -13.80723 -13.76375 -13.45934 -13.15722 -12.97885 -12.91544 -12.88841 -12.67248 -12.48347 -12.20227 -12.01130 -11.83448 -11.78378 -11.50815 -11.49568 -11.45098 -11.07119 -10.88436 -10.53218 -9.95014 -9.77308 -9.11026 -8.38581 -6.48766 0.92655 1.26508 1.37183 1.38205 1.44298 1.48276 1.87217 2.18256 2.25328 2.27771 2.49401 2.93931 3.49537 3.70174 3.86210 3.92335 4.07383 4.17872 4.21168 4.22379 4.50267 4.57877 4.59659 4.63921 4.69358 4.72499 4.76494 4.77497 4.84168 4.87886 5.08358 5.10295 5.12585 5.13973 5.17935 5.23117 5.23777 5.39159 5.52535 5.53588 5.88264 5.98824 6.23247 6.39001 6.56795 6.68336 6.98326 7.13558 7.14425 7.49312 8.78416 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021392 B = 0.002754 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.591550 B =10164.353715 C =10813.408393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.096 4.096 4 H 0.062 0.938 5 C -0.163 4.163 6 C 0.149 3.851 7 H 0.152 0.848 8 N -0.708 5.708 9 C 0.504 3.496 10 C -0.163 4.163 11 O -0.568 6.568 12 C 0.503 3.497 13 O -0.524 6.524 14 N -0.625 5.625 15 C 0.268 3.732 16 C -0.296 4.296 17 C 0.060 3.940 18 N -0.344 5.344 19 C 0.239 3.761 20 C -0.546 4.546 21 H 0.028 0.972 22 C 0.016 3.984 23 N -0.941 5.941 24 Si 0.954 3.046 25 H -0.265 1.265 26 H -0.232 1.232 27 H -0.277 1.277 28 N -0.345 5.345 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.425 0.575 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.422 0.578 42 H 0.159 0.841 43 H 0.208 0.792 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.760 -19.769 14.573 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.116 4.116 4 H 0.081 0.919 5 C -0.221 4.221 6 C 0.039 3.961 7 H 0.170 0.830 8 N -0.362 5.362 9 C 0.293 3.707 10 C -0.222 4.222 11 O -0.445 6.445 12 C 0.289 3.711 13 O -0.397 6.397 14 N -0.276 5.276 15 C 0.013 3.987 16 C -0.327 4.327 17 C -0.088 4.088 18 N -0.126 5.126 19 C 0.119 3.881 20 C -0.584 4.584 21 H 0.046 0.954 22 C -0.183 4.183 23 N -0.580 5.580 24 Si 0.775 3.225 25 H -0.190 1.190 26 H -0.155 1.155 27 H -0.202 1.202 28 N -0.176 5.176 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.264 0.736 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.133 0.867 41 H 0.260 0.740 42 H 0.177 0.823 43 H 0.224 0.776 44 H 0.099 0.901 45 H 0.062 0.938 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.010 -18.503 13.922 26.085 hybrid contribution 0.444 0.458 -0.069 0.642 sum -11.566 -18.045 13.853 25.520 Atomic orbital electron populations 1.21808 0.95803 1.02106 1.01398 1.21463 0.95957 0.93386 1.03338 1.21424 0.91607 0.99261 0.99319 0.91930 1.22093 1.03052 0.99900 0.97017 1.20986 0.96946 0.87954 0.90238 0.83032 1.45644 1.54424 1.32228 1.03942 1.21457 0.78917 0.83490 0.86830 1.21864 1.04257 1.03058 0.93062 1.90723 1.38885 1.27041 1.87899 1.21914 0.77016 0.90136 0.82081 1.90659 1.47760 1.69209 1.32023 1.42877 1.64545 1.08854 1.11361 1.19528 0.99020 0.87633 0.92546 1.21687 1.16594 0.94448 1.00018 1.23181 1.00433 1.00364 0.84868 1.48508 1.48530 1.10023 1.05519 1.19899 0.96220 0.81905 0.90030 1.21215 1.25737 0.97583 1.13899 0.95406 1.25892 0.94328 1.04358 0.93724 1.70041 1.32249 1.37659 1.18040 0.85635 0.78571 0.77317 0.80973 1.18996 1.15482 1.20216 1.77305 1.25756 0.93113 1.21377 0.94414 0.92314 0.91397 0.89463 0.91325 0.94488 0.89489 0.91066 0.73638 0.88665 0.89383 0.86734 0.73986 0.82317 0.77577 0.90093 0.93813 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 71.98 0.70 -1.25 16 2 C -0.10 -1.20 5.32 30.59 0.16 -1.04 16 3 C -0.10 -1.73 1.75 -10.80 -0.02 -1.75 16 4 H 0.06 1.67 6.17 -2.39 -0.01 1.65 16 5 C -0.16 -2.87 7.97 71.98 0.57 -2.29 16 6 C 0.15 2.64 2.60 44.24 0.12 2.76 16 7 H 0.15 1.44 8.14 -2.38 -0.02 1.42 16 8 N -0.71 -10.44 4.35 -446.10 -1.94 -12.38 16 9 C 0.50 10.62 6.71 87.66 0.59 11.21 16 10 C -0.16 -1.91 10.30 71.24 0.73 -1.17 16 11 O -0.57 -18.60 12.99 19.44 0.25 -18.35 16 12 C 0.50 14.79 6.26 87.66 0.55 15.34 16 13 O -0.52 -19.67 10.82 19.37 0.21 -19.46 16 14 N -0.62 -19.74 4.14 -307.52 -1.27 -21.01 16 15 C 0.27 11.15 8.11 133.33 1.08 12.24 16 16 C -0.30 -12.20 9.61 22.11 0.21 -11.99 16 17 C 0.06 2.36 11.44 83.52 0.96 3.31 16 18 N -0.34 -16.00 3.67 -351.85 -1.29 -17.29 16 19 C 0.24 11.35 5.33 85.63 0.46 11.81 16 20 C -0.55 -31.88 9.79 25.60 0.25 -31.63 16 21 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 22 C 0.02 0.91 5.47 84.65 0.46 1.37 16 23 N -0.94 -58.18 13.96 21.45 0.30 -57.88 16 24 Si 0.95 41.19 27.47 68.60 1.88 43.07 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.23 -8.74 6.54 99.48 0.65 -8.09 16 27 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 28 N -0.34 -16.46 12.42 -54.45 -0.68 -17.14 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.73 6.56 -2.39 -0.02 0.72 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.73 7.45 -2.39 -0.02 0.71 16 34 H 0.04 0.87 5.94 -2.39 -0.01 0.86 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.19 6.57 -2.38 -0.02 1.17 16 37 H 0.42 2.60 8.83 -92.71 -0.82 1.78 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.42 10.80 7.68 -92.71 -0.71 10.09 16 42 H 0.16 6.59 5.92 -2.91 -0.02 6.58 16 43 H 0.21 6.18 8.06 -2.91 -0.02 6.15 16 44 H 0.08 3.37 7.12 -2.39 -0.02 3.35 16 45 H 0.04 2.01 7.57 -2.39 -0.02 1.99 16 46 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -88.25 370.25 3.71 -84.53 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: -0.57 Total: 28.98 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 6.82 Total: 6.91 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -4.88 Total: -125.69 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: 0.46 Total: -37.80 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.88 Total: 43.07 kcal Total: -88.25 3.71 -84.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285558349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.182 kcal (2) G-P(sol) polarization free energy of solvation -88.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds