Wall clock time and date at job start Tue Mar 31 2020 14:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.57306 * 2 1 4 4 C 1.53092 * 109.52395 * 239.84126 * 2 1 3 5 5 O 1.42902 * 109.41712 * 182.48541 * 4 2 1 6 6 C 1.42902 * 114.09644 * 61.15976 * 5 4 2 7 7 C 1.53095 * 109.41247 * 298.83793 * 6 5 4 8 8 C 1.53179 * 109.16308 * 57.61565 * 7 6 5 9 9 H 1.09001 * 109.54501 * 62.97183 * 8 7 6 10 10 C 1.52997 * 109.54641 * 183.15058 * 8 7 6 11 11 N 1.46501 * 109.46925 * 294.99955 * 10 8 7 12 12 C 1.34778 * 120.00114 * 180.02562 * 11 10 8 13 13 O 1.21589 * 119.99759 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00263 * 179.97438 * 12 11 10 15 15 C 1.40199 * 120.00135 * 179.97438 * 14 12 11 16 16 C 1.40395 * 125.97127 * 0.02562 * 15 14 12 17 17 C 1.35240 * 107.86992 * 179.97438 * 16 15 14 18 18 N 1.34964 * 107.85537 * 0.02562 * 17 16 15 19 19 C 1.46498 * 125.97606 * 179.74003 * 18 17 16 20 20 C 1.50700 * 109.47588 * 124.99841 * 19 18 17 21 21 H 1.07998 * 119.99859 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00029 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00319 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99823 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47257 * 59.99874 * 24 22 20 26 26 H 1.48493 * 109.47246 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47304 * 300.00450 * 24 22 20 28 28 N 1.31209 * 125.97168 * 179.97438 * 15 14 12 29 29 H 1.09005 * 109.47199 * 299.83980 * 1 2 3 30 30 H 1.08996 * 109.47516 * 59.84525 * 1 2 3 31 31 H 1.09007 * 109.47131 * 179.84846 * 1 2 3 32 32 H 1.09006 * 109.48029 * 62.50087 * 4 2 1 33 33 H 1.09001 * 109.47679 * 302.46816 * 4 2 1 34 34 H 1.09000 * 109.47956 * 178.86514 * 6 5 4 35 35 H 1.08992 * 109.48332 * 58.82496 * 6 5 4 36 36 H 1.08995 * 109.52981 * 297.70697 * 7 6 5 37 37 H 1.09001 * 109.57229 * 177.54498 * 7 6 5 38 38 H 1.08993 * 109.47544 * 174.99927 * 10 8 7 39 39 H 1.09000 * 109.47293 * 54.99568 * 10 8 7 40 40 H 0.97001 * 120.00093 * 359.97438 * 11 10 8 41 41 H 0.97001 * 119.99944 * 359.97438 * 14 12 11 42 42 H 1.08006 * 126.06976 * 0.03281 * 16 15 14 43 43 H 1.07999 * 126.07352 * 180.02562 * 17 16 15 44 44 H 1.09005 * 109.46948 * 244.99811 * 19 18 17 45 45 H 1.09001 * 109.47422 * 4.99250 * 19 18 17 46 46 H 0.96997 * 119.99892 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4694 -0.7743 -1.2163 6 6 4.0043 -1.4816 -0.0957 7 6 3.5716 -0.7870 1.1982 8 6 2.0419 -0.7253 1.2484 9 1 1.6368 -1.7368 1.2759 10 6 1.6012 0.0367 2.4998 11 7 1.9973 -0.7144 3.6936 12 6 1.7108 -0.2320 4.9191 13 8 1.1241 0.8267 5.0338 14 7 2.0747 -0.9232 6.0174 15 6 1.7773 -0.4212 7.2921 16 6 1.1084 0.7816 7.5693 17 6 1.0177 0.9060 8.9129 18 7 1.6059 -0.1739 9.4691 19 6 1.7357 -0.4398 10.9039 20 6 1.1471 -1.7906 11.2199 21 1 0.7187 -2.3909 10.4309 22 6 1.1555 -2.2601 12.5162 23 7 1.6767 -1.5290 13.4771 24 14 0.4252 -3.9342 12.9079 25 1 1.1484 -4.9813 12.1424 26 1 0.5569 -4.2037 14.3623 27 1 -1.0110 -3.9484 12.5304 28 7 2.0745 -0.9939 8.4346 29 1 -0.3634 0.5114 0.8914 30 1 -0.3634 0.5162 -0.8885 31 1 -0.3634 -1.0277 -0.0027 32 1 1.7159 -0.1885 -2.1389 33 1 1.6431 -1.7393 -1.2676 34 1 5.0925 -1.4903 -0.1571 35 1 3.6316 -2.5058 -0.1007 36 1 3.9779 0.2240 1.2224 37 1 3.9417 -1.3490 2.0557 38 1 0.5180 0.1572 2.4892 39 1 2.0758 1.0178 2.5138 40 1 2.4650 -1.5592 3.6021 41 1 2.5425 -1.7681 5.9258 42 1 0.7320 1.4828 6.8391 43 1 0.5567 1.7242 9.4461 44 1 2.7898 -0.4289 11.1815 45 1 1.2042 0.3285 11.4654 46 1 1.6829 -1.8595 14.3890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287210561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:15 Heat of formation + Delta-G solvation = -4.553772 kcal Electronic energy + Delta-G solvation = -26522.350474 eV Core-core repulsion = 22641.644076 eV Total energy + Delta-G solvation = -3880.706398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.77938 -40.23483 -39.36038 -36.34279 -34.66604 -34.10018 -33.30184 -32.32634 -30.84941 -29.28563 -28.07627 -27.08543 -26.48669 -23.64196 -22.91775 -22.69825 -21.53699 -20.65729 -20.26237 -19.74085 -18.00426 -16.91327 -16.60098 -16.55556 -16.21726 -15.92295 -15.77048 -15.14110 -15.00648 -14.77853 -14.50145 -14.18995 -14.03793 -13.82931 -13.60392 -12.92269 -12.75520 -12.56401 -12.42284 -12.35550 -12.28267 -12.18572 -11.75556 -11.58257 -11.37518 -11.05921 -10.94778 -10.85668 -10.71619 -10.43167 -10.24835 -10.07717 -9.89832 -9.68199 -9.49989 -9.21877 -8.62134 -8.08750 -7.39997 -6.23355 -4.28406 2.38478 2.67941 3.12724 3.25675 3.28926 3.33268 3.44213 3.60933 3.85383 4.15616 4.16976 4.20938 4.30248 4.38471 4.45104 4.74075 4.83949 4.95729 5.01589 5.05322 5.11552 5.14356 5.22966 5.33102 5.36244 5.44935 5.50015 5.56331 5.63873 5.65958 5.82086 5.82410 5.93161 6.21506 6.30295 6.55502 6.59131 6.75186 6.88472 7.01870 7.11768 7.51038 7.70321 7.83550 7.98550 8.08298 8.59737 8.67671 8.81633 9.36965 10.85257 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025374 B = 0.002008 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.238204 B =13938.196494 C =14280.470889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 H 0.084 0.916 4 C 0.066 3.934 5 O -0.383 6.383 6 C 0.060 3.940 7 C -0.153 4.153 8 C -0.098 4.098 9 H 0.080 0.920 10 C 0.145 3.855 11 N -0.745 5.745 12 C 0.713 3.287 13 O -0.567 6.567 14 N -0.644 5.644 15 C 0.275 3.725 16 C -0.286 4.286 17 C 0.051 3.949 18 N -0.321 5.321 19 C 0.259 3.741 20 C -0.528 4.528 21 H 0.068 0.932 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.908 3.092 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 N -0.308 5.308 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.395 0.605 41 H 0.406 0.594 42 H 0.160 0.840 43 H 0.167 0.833 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 1.427 -28.019 28.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.138 4.138 3 H 0.103 0.897 4 C -0.011 4.011 5 O -0.302 6.302 6 C -0.017 4.017 7 C -0.191 4.191 8 C -0.117 4.117 9 H 0.098 0.902 10 C 0.021 3.979 11 N -0.401 5.401 12 C 0.412 3.588 13 O -0.443 6.443 14 N -0.294 5.294 15 C 0.021 3.979 16 C -0.318 4.318 17 C -0.099 4.099 18 N -0.102 5.102 19 C 0.141 3.859 20 C -0.567 4.567 21 H 0.086 0.914 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.201 1.201 28 N -0.139 5.139 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.229 0.771 41 H 0.240 0.760 42 H 0.178 0.822 43 H 0.185 0.815 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.653 1.485 -27.164 27.255 hybrid contribution -0.440 -1.205 0.225 1.302 sum 1.213 0.280 -26.939 26.968 Atomic orbital electron populations 1.21855 0.94033 1.02351 1.02703 1.21738 0.96639 1.00908 0.94488 0.89741 1.22658 0.80971 0.99675 0.97755 1.87949 1.20338 1.76402 1.45491 1.22594 0.99223 0.94481 0.85364 1.22294 0.95401 1.02824 0.98561 1.21505 0.95806 1.00200 0.94150 0.90193 1.21285 1.00511 0.94754 0.81364 1.45027 1.64439 1.26498 1.04182 1.15619 0.79760 0.83570 0.79883 1.90869 1.45851 1.22481 1.85061 1.41383 1.60978 1.25121 1.01903 1.18783 1.00489 0.94295 0.84296 1.21507 1.14100 1.01259 0.94910 1.22555 0.99881 0.93617 0.93863 1.49048 1.40514 1.13404 1.07283 1.19727 0.99041 0.98716 0.68381 1.21218 1.39620 1.01825 0.93995 0.91388 1.24947 0.95185 0.98213 0.95772 1.69906 1.44596 1.37759 1.01106 0.86384 0.79646 0.83321 0.77113 1.19969 1.21055 1.20059 1.77319 1.25664 1.18102 0.92843 0.91494 0.92186 0.92394 0.88721 0.93096 0.88747 0.93136 0.90493 0.90603 0.90929 0.91319 0.77085 0.75951 0.82214 0.81534 0.93769 0.92544 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 8.93 37.16 0.33 -0.46 16 2 C -0.12 -0.68 2.41 -90.48 -0.22 -0.89 16 3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.07 0.39 6.13 37.21 0.23 0.61 16 5 O -0.38 -3.04 10.77 -35.23 -0.38 -3.41 16 6 C 0.06 0.36 6.84 37.21 0.25 0.61 16 7 C -0.15 -0.89 5.26 -26.59 -0.14 -1.03 16 8 C -0.10 -0.58 1.81 -90.43 -0.16 -0.74 16 9 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 10 C 0.14 1.22 4.90 -4.04 -0.02 1.20 16 11 N -0.74 -7.14 5.32 -65.23 -0.35 -7.48 16 12 C 0.71 10.39 8.53 -86.92 -0.74 9.65 16 13 O -0.57 -10.27 13.47 5.29 0.07 -10.19 16 14 N -0.64 -9.99 5.46 -15.51 -0.08 -10.08 16 15 C 0.28 5.59 8.11 -154.36 -1.25 4.34 16 16 C -0.29 -5.80 9.60 -39.84 -0.38 -6.18 16 17 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 18 N -0.32 -7.53 3.67 -62.56 -0.23 -7.76 16 19 C 0.26 6.62 6.26 -5.19 -0.03 6.59 16 20 C -0.53 -14.75 9.24 -34.44 -0.32 -15.07 16 21 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.90 -25.38 13.29 55.43 0.74 -24.65 16 24 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 N -0.31 -7.14 12.43 31.44 0.39 -6.75 16 29 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.38 7.28 -51.93 -0.38 0.00 16 38 H 0.07 0.67 6.31 -51.93 -0.33 0.34 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.40 2.67 7.69 -40.82 -0.31 2.36 16 41 H 0.41 5.04 8.84 -40.82 -0.36 4.68 16 42 H 0.16 3.18 5.91 -52.48 -0.31 2.87 16 43 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 44 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 46 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -33.65 374.43 -9.03 -42.68 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.06 Total: 4.56 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -2.75 Total: 1.07 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.47 Total: -56.71 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.31 Total: -13.61 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.65 -9.03 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287210561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.128 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds